Strain identifier

BacDive ID: 5526

Type strain: Yes

Species: Flavobacterium succinicans

Strain Designation: 8, Cy su3

Culture col. no.: DSM 4002, IAM 14311, IFO 14905, NBRC 14905

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General

@ref: 1569

BacDive-ID: 5526

DSM-Number: 4002

keywords: facultative anaerobe, Bacteria, 16S sequence, genome sequence, mesophilic

description: Flavobacterium succinicans 8 is a facultative anaerobe, mesophilic bacterium that was isolated from eroded caudal fin of a fingerling chinook salmon.

strain history: <- H. Reichenbach, Cy su3 <- J.T. Staley <- R.L. Anderson, E.J. Ordal, 8 (Cytophaga succinicans)

doi: 10.13145/bacdive5526.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidetes
  • domain: Bacteria
  • phylum: Bacteroidetes
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Flavobacterium
  • species: Flavobacterium succinicans
  • full scientific name: Flavobacterium succinicans (Reichenbach 1989) Bernardet et al. 1996
  • synonyms

    • @ref: 20215
    • synonym: Cytophaga succinicans

@ref: 1569

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Flavobacterium

species: Flavobacterium succinicans

full scientific name: Flavobacterium succinicans (Reichenbach 1989) Bernardet et al. 1996

strain designation: 8, Cy su3

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1569CY-AGAR (DSMZ Medium 67), fac. anaerobicyeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium67.pdf
39086MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)

culture temp

@refgrowthtypetemperaturerange
1569positivegrowth25-30mesophilic
39086positivegrowth22psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 1569
  • oxygen tolerance: facultative anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 1569
  • sample type: eroded caudal fin of a fingerling chinook salmon
  • geographic location: Washington
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Host#Fishes#Salmonidae
#Host Body-Site#Limb

Safety information

risk assessment

  • @ref: 1569
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Flavobacterium succinicans strain DSM 4002 16S ribosomal RNA gene, partial sequenceJX6570461256ena29536
20218Flavobacterium succinicans gene for 16S ribosomal RNA, partial sequence, strain: IFO 14905D126731256ena29536
1569Flavobacterium succinicans partial 16S rRNA gene, type strain DSM 4002AM2304921501ena29536
1569Flavobacterium succinicans gene for 16S rRNA, partial sequence, strain: NBRC 14905AB6806951439ena29536

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Flavobacterium succinicans DSM 4002GCA_900114945scaffoldncbi29536
66792Flavobacterium succinicans DD5bGCA_001662485contigncbi29536
66792Flavobacterium succinicans strain DD5b29536.5wgspatric29536
66792Flavobacterium succinicans strain DSM 400229536.15wgspatric29536
66792Flavobacterium succinicans DSM 40022693429891permanentimg29536

GC content

@refGC-content
156938.0
156935.0

External links

@ref: 1569

culture collection no.: DSM 4002, IAM 14311, IFO 14905, NBRC 14905

straininfo link

@refpassport
20218http://www.straininfo.net/strains/41080
20218http://www.straininfo.net/strains/158624
20218http://www.straininfo.net/strains/41081
20218http://www.straininfo.net/strains/487081

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1569Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4002)https://www.dsmz.de/collection/catalogue/details/culture/DSM-4002
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39086Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16686
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)