Strain identifier
BacDive ID: 5526
Type strain: 
Species: Flavobacterium succinicans
Strain Designation: 8, Cy su3
Culture col. no.: DSM 4002, IAM 14311, IFO 14905, NBRC 14905
General
@ref: 1569
BacDive-ID: 5526
DSM-Number: 4002
keywords: facultative anaerobe, Bacteria, 16S sequence, genome sequence, mesophilic
description: Flavobacterium succinicans 8 is a facultative anaerobe, mesophilic bacterium that was isolated from eroded caudal fin of a fingerling chinook salmon.
strain history: <- H. Reichenbach, Cy su3 <- J.T. Staley <- R.L. Anderson, E.J. Ordal, 8 (Cytophaga succinicans)
doi: 10.13145/bacdive5526.20201210.5
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidetes
- domain: Bacteria
- phylum: Bacteroidetes
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Flavobacterium
- species: Flavobacterium succinicans
- full scientific name: Flavobacterium succinicans (Reichenbach 1989) Bernardet et al. 1996
synonyms
- @ref: 20215
- synonym: Cytophaga succinicans
@ref: 1569
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Flavobacterium
species: Flavobacterium succinicans
full scientific name: Flavobacterium succinicans (Reichenbach 1989) Bernardet et al. 1996
strain designation: 8, Cy su3
type strain: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 1569 | CY-AGAR (DSMZ Medium 67), fac. anaerobic | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium67.pdf | |
| 39086 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 1569 | positive | growth | 25-30 | mesophilic |
| 39086 | positive | growth | 22 | psychrophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 1569
- oxygen tolerance: facultative anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 1569
- sample type: eroded caudal fin of a fingerling chinook salmon
- geographic location: Washington
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Fishes | #Salmonidae |
| #Host Body-Site | #Limb |
Safety information
risk assessment
- @ref: 1569
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Flavobacterium succinicans strain DSM 4002 16S ribosomal RNA gene, partial sequence | JX657046 | 1256 | ena | 29536 |
| 20218 | Flavobacterium succinicans gene for 16S ribosomal RNA, partial sequence, strain: IFO 14905 | D12673 | 1256 | ena | 29536 |
| 1569 | Flavobacterium succinicans partial 16S rRNA gene, type strain DSM 4002 | AM230492 | 1501 | ena | 29536 |
| 1569 | Flavobacterium succinicans gene for 16S rRNA, partial sequence, strain: NBRC 14905 | AB680695 | 1439 | ena | 29536 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Flavobacterium succinicans DSM 4002 | GCA_900114945 | scaffold | ncbi | 29536 |
| 66792 | Flavobacterium succinicans DD5b | GCA_001662485 | contig | ncbi | 29536 |
| 66792 | Flavobacterium succinicans strain DD5b | 29536.5 | wgs | patric | 29536 |
| 66792 | Flavobacterium succinicans strain DSM 4002 | 29536.15 | wgs | patric | 29536 |
| 66792 | Flavobacterium succinicans DSM 4002 | 2693429891 | permanent | img | 29536 |
GC content
| @ref | GC-content |
|---|---|
| 1569 | 38.0 |
| 1569 | 35.0 |
External links
@ref: 1569
culture collection no.: DSM 4002, IAM 14311, IFO 14905, NBRC 14905
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/41080 |
| 20218 | http://www.straininfo.net/strains/158624 |
| 20218 | http://www.straininfo.net/strains/41081 |
| 20218 | http://www.straininfo.net/strains/487081 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 1569 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4002) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-4002 | |||
| 20215 | D.Gleim, M.Kracht, N.Weiss et. al. | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 39086 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/16686 | ||||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |