Strain identifier

BacDive ID: 5510

Type strain: Yes

Species: Chryseobacterium halperniae

Strain Designation: H1

Culture col. no.: DSM 19921, LMG 24401

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General

@ref: 8390

BacDive-ID: 5510

DSM-Number: 19921

keywords: mesophilic, aerobe, Bacteria, 16S sequence, genome sequence, gram-negative, rod-shaped

description: Chryseobacterium halperniae H1 is an aerobe, mesophilic, gram-negative bacterium that was isolated from raw cow milk.

strain history: <- M. Halpern, Dept. Biol., Faculty of Sci. and Sci. Education, Univ. Haifa, Oranim, Tivon, Israel; H1 <- E. Hantsis-Zacharov

doi: 10.13145/bacdive5510.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidetes
  • domain: Bacteria
  • phylum: Bacteroidetes
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Chryseobacterium
  • species: Chryseobacterium halperniae
  • full scientific name: Chryseobacterium halperniae Hahnke et al. 2017
  • synonyms

    • @ref: 20215
    • synonym: Epilithonimonas lactis

@ref: 8390

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Chryseobacterium

species: Chryseobacterium halperniae

full scientific name: Chryseobacterium halperniae Hahnke et al. 2017

strain designation: H1

type strain: yes

Morphology

cell morphology

  • @ref: 29410
  • gram stain: negative
  • cell length: 1.65 µm
  • cell width: 0.8 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 29410
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 8390
  • name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium381.pdf

culture temp

@refgrowthtypetemperaturerange
8390positivegrowth28mesophilic
29410positivegrowth05-33
29410positiveoptimum27.5mesophilic

culture pH

@refabilitytypepH
29410positivegrowth04-08
29410positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 29410
  • oxygen tolerance: aerobe

halophily

@refsaltgrowthtested relationconcentration
29410NaClpositivegrowth0-2 %
29410NaClpositiveoptimum0.25 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2941017234glucose+carbon source
2941017306maltose+carbon source
294104853esculin+hydrolysis

metabolite production

  • @ref: 29410
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 29410
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
29410acid phosphatase+3.1.3.2
29410alkaline phosphatase+3.1.3.1
29410catalase+1.11.1.6
29410cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 8390
  • sample type: raw cow milk
  • geographic location: Northern Israel
  • country: Israel
  • origin.country: ISR
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Bovinae (Cow, Cattle)
#Host Body Product#Fluids#Milk

Safety information

risk assessment

  • @ref: 8390
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 8390
  • description: Chryseobacterium halperniae strain H1 16S ribosomal RNA gene, partial sequence
  • accession: EF204460
  • length: 1497
  • database: ena
  • NCBI tax ID: 421072

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Chryseobacterium halperniae LMG 24401GCA_000735105contigncbi421072
66792Chryseobacterium halperniae DSM 19921GCA_900110605scaffoldncbi421072
66792Chryseobacterium halperniae strain DSM 19921421072.12wgspatric421072
66792Epilithonimonas lactis strain LMG 24401421072.8wgspatric421072
66792Chryseobacterium halperniae DSM 199212622736498permanentimg421072

GC content

@refGC-contentmethod
839038.0high performance liquid chromatography (HPLC)
2941038

External links

@ref: 8390

culture collection no.: DSM 19921, LMG 24401

straininfo link

@refpassport
20218http://www.straininfo.net/strains/853173
20218http://www.straininfo.net/strains/764231

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
8390Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19921)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19921
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2581710.1099/ijs.0.012575-0
29410Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information25817
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)