Strain identifier

BacDive ID: 5509

Type strain: Yes

Species: Chryseobacterium tenax

Strain Designation: EP105

Culture col. no.: DSM 16811, NCIMB 14026

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 6610

BacDive-ID: 5509

DSM-Number: 16811

keywords: psychrophilic, aerobe, Bacteria, 16S sequence, genome sequence, gram-negative, rod-shaped

description: Chryseobacterium tenax EP105 is an aerobe, psychrophilic, gram-negative bacterium that was isolated from epilithon-covered stones from River Taff.

strain history: <- L. A. O'Sullivan; EP105

doi: 10.13145/bacdive5509.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidetes
  • domain: Bacteria
  • phylum: Bacteroidetes
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Chryseobacterium
  • species: Chryseobacterium tenax
  • full scientific name: Chryseobacterium tenax (O'Sullivan et al. 2006) Hahnke et al. 2017
  • synonyms

    • @ref: 20215
    • synonym: Epilithonimonas tenax

@ref: 6610

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Chryseobacterium

species: Chryseobacterium tenax

full scientific name: Chryseobacterium tenax (O'Sullivan et al. 2006) Hahnke et al. 2017

strain designation: EP105

type strain: yes

Morphology

cell morphology

  • @ref: 31634
  • gram stain: negative
  • cell length: 1-2.5 µm
  • cell width: 0.6-0.7 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 31634
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 6610
  • name: OXOID NUTRIENT BROTH (DSMZ Medium 948)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium948.pdf

culture temp

@refgrowthtypetemperaturerange
6610positivegrowth20psychrophilic
31634positivegrowth04-30
31634positiveoptimum30mesophilic

culture pH

@refabilitytypepH
31634positivegrowth7
31634positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 31634
  • oxygen tolerance: aerobe

spore formation

  • @ref: 31634
  • spore formation: no

observation

  • @ref: 31634
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3163430089acetate+carbon source
3163423652dextrin+carbon source
3163417234glucose+carbon source
3163429987glutamate+carbon source
3163428087glycogen+carbon source
3163417306maltose+carbon source
3163437684mannose+carbon source
3163418257ornithine+carbon source
3163426271proline+carbon source
3163417822serine+carbon source
3163417992sucrose+carbon source
3163426986threonine+carbon source
3163427082trehalose+carbon source
316344853esculin+hydrolysis

enzymes

@refvalueactivityec
31634catalase+1.11.1.6
31634cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 6610
  • sample type: epilithon-covered stones from River Taff
  • geographic location: Cardiff
  • country: United Kingdom
  • origin.country: GBR
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Geologic
#Host#Plants

Safety information

risk assessment

  • @ref: 6610
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 6610
  • description: Epilithonimonas tenax strain EP105 16S ribosomal RNA gene, partial sequence
  • accession: AF493696
  • length: 1305
  • database: ena
  • NCBI tax ID: 191577

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Chryseobacterium tenax DSM 16811GCA_000428485scaffoldncbi1121870
66792Epilithonimonas tenax DSM 168111121870.4wgspatric1121870
66792Chryseobacterium tenax DSM 168112524023241permanentimg1121870

GC content

  • @ref: 6610
  • GC-content: 37.5

External links

@ref: 6610

culture collection no.: DSM 16811, NCIMB 14026

straininfo link

@refpassport
20218http://www.straininfo.net/strains/674852
20218http://www.straininfo.net/strains/565355

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
6610Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16811)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16811
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2791710.1099/ijs.0.63941-0
31634Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information27917
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)