Strain identifier
BacDive ID: 5509
Type strain: 
Species: Chryseobacterium tenax
Strain Designation: EP105
Culture col. no.: DSM 16811, NCIMB 14026
version 5.0 (current version)
General
@ref: 6610
BacDive-ID: 5509
DSM-Number: 16811
keywords: psychrophilic, aerobe, Bacteria, 16S sequence, genome sequence, gram-negative, rod-shaped
description: Chryseobacterium tenax EP105 is an aerobe, psychrophilic, gram-negative bacterium that was isolated from epilithon-covered stones from River Taff.
strain history: <- L. A. O'Sullivan; EP105
doi: 10.13145/bacdive5509.20201210.5
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidetes
- domain: Bacteria
- phylum: Bacteroidetes
- class: Flavobacteriia
- order: Flavobacteriales
- family: Weeksellaceae
- genus: Chryseobacterium
- species: Chryseobacterium tenax
- full scientific name: Chryseobacterium tenax (O'Sullivan et al. 2006) Hahnke et al. 2017
synonyms
- @ref: 20215
- synonym: Epilithonimonas tenax
@ref: 6610
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Chryseobacterium
species: Chryseobacterium tenax
full scientific name: Chryseobacterium tenax (O'Sullivan et al. 2006) Hahnke et al. 2017
strain designation: EP105
type strain: yes
Morphology
cell morphology
- @ref: 31634
- gram stain: negative
- cell length: 1-2.5 µm
- cell width: 0.6-0.7 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 31634
- production: yes
Culture and growth conditions
culture medium
- @ref: 6610
- name: OXOID NUTRIENT BROTH (DSMZ Medium 948)
- growth: yes
- link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium948.pdf
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 6610 | positive | growth | 20 | psychrophilic |
| 31634 | positive | growth | 04-30 | |
| 31634 | positive | optimum | 30 | mesophilic |
culture pH
| @ref | ability | type | pH |
|---|---|---|---|
| 31634 | positive | growth | 7 |
| 31634 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 31634
- oxygen tolerance: aerobe
spore formation
- @ref: 31634
- spore formation: no
observation
- @ref: 31634
- observation: aggregates in chains
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 31634 | 30089 | acetate | + | carbon source |
| 31634 | 23652 | dextrin | + | carbon source |
| 31634 | 17234 | glucose | + | carbon source |
| 31634 | 29987 | glutamate | + | carbon source |
| 31634 | 28087 | glycogen | + | carbon source |
| 31634 | 17306 | maltose | + | carbon source |
| 31634 | 37684 | mannose | + | carbon source |
| 31634 | 18257 | ornithine | + | carbon source |
| 31634 | 26271 | proline | + | carbon source |
| 31634 | 17822 | serine | + | carbon source |
| 31634 | 17992 | sucrose | + | carbon source |
| 31634 | 26986 | threonine | + | carbon source |
| 31634 | 27082 | trehalose | + | carbon source |
| 31634 | 4853 | esculin | + | hydrolysis |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 31634 | catalase | + | 1.11.1.6 |
| 31634 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
- @ref: 6610
- sample type: epilithon-covered stones from River Taff
- geographic location: Cardiff
- country: United Kingdom
- origin.country: GBR
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Geologic |
| #Host | #Plants |
Safety information
risk assessment
- @ref: 6610
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 6610
- description: Epilithonimonas tenax strain EP105 16S ribosomal RNA gene, partial sequence
- accession: AF493696
- length: 1305
- database: ena
- NCBI tax ID: 191577
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Chryseobacterium tenax DSM 16811 | GCA_000428485 | scaffold | ncbi | 1121870 |
| 66792 | Epilithonimonas tenax DSM 16811 | 1121870.4 | wgs | patric | 1121870 |
| 66792 | Chryseobacterium tenax DSM 16811 | 2524023241 | permanent | img | 1121870 |
GC content
- @ref: 6610
- GC-content: 37.5
External links
@ref: 6610
culture collection no.: DSM 16811, NCIMB 14026
straininfo link
| @ref | passport |
|---|---|
| 20218 | http://www.straininfo.net/strains/674852 |
| 20218 | http://www.straininfo.net/strains/565355 |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed | ID_cross_reference |
|---|---|---|---|---|---|---|---|
| 6610 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16811) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16811 | ||||
| 20215 | D.Gleim, M.Kracht, N.Weiss et. al. | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | ||||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | ||
| 27917 | 10.1099/ijs.0.63941-0 | ||||||
| 31634 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 27917 | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |