Strain identifier

BacDive ID: 5508

Type strain: No

Species: Empedobacter sp.

Strain Designation: S-15

Strain history: <- ATCC <- Ajinomoto Co., Inc., S-15 (deposited as a strain of Flavobacterium breve = Empedobacter brevis)

NCBI tax ID(s): 1927715 (species)

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General

@ref: 9129

BacDive-ID: 5508

DSM-Number: 30096

keywords: 16S sequence, Bacteria, mesophilic

description: Empedobacter sp. S-15 is a mesophilic bacterium that was isolated from Human blood.

NCBI tax id

  • NCBI tax id: 1927715
  • Matching level: species

strain history

  • @ref: 9129
  • history: <- ATCC <- Ajinomoto Co., Inc., S-15 (deposited as a strain of Flavobacterium breve = Empedobacter brevis)

doi: 10.13145/bacdive5508.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Empedobacter
  • species: Empedobacter sp.
  • full scientific name: Empedobacter (ex Prévot 1961) Vandamme et al. 1994

  • synonyms

    • @ref: 20215
    • synonym: Wautersiella

@ref: 9129

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Weeksellaceae

genus: Empedobacter

species: Empedobacter sp.

full scientific name: Empedobacter sp.

strain designation: S-15

type strain: no

Culture and growth conditions

culture medium

  • @ref: 9129
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 9129
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

compound production

  • @ref: 9129
  • compound: 5' inosinic acid

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin+hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan+energy source
6836917632nitrate-reduction
6837418257ornithine-degradation
6837429016arginine-hydrolysis
6837425094lysine-degradation
6837416199urea-hydrolysis
6837418403L-arabitol-builds acid from
6837418024D-galacturonic acid-builds acid from
68374Potassium 5-ketogluconate-builds acid from
6837416899D-mannitol-builds acid from
6837417306maltose-builds acid from
6837415963ribitol-builds acid from
6837418394palatinose-builds acid from
6837415792malonate-assimilation
6837427897tryptophan-energy source
6837417634D-glucose-builds acid from
6837417992sucrose-builds acid from
6837430849L-arabinose-builds acid from
6837418333D-arabitol-builds acid from
6837427082trehalose-builds acid from
6837462345L-rhamnose-builds acid from
6837417268myo-inositol-builds acid from
6837417057cellobiose-builds acid from
6837430911sorbitol-builds acid from

metabolite production

@refChebi-IDmetaboliteproduction
6837435581indoleno
6836935581indoleyes

metabolite tests

@refChebi-IDmetaboliteindole test
6837435581indole-
6836935581indole+

enzymes

@refvalueactivityec
68374L-aspartate arylamidase+3.4.11.21
68374alpha-maltosidase+
68374alpha-galactosidase-3.2.1.22
68374alpha-glucosidase+3.2.1.20
68374beta-galactosidase-3.2.1.23
68374N-acetyl-beta-glucosaminidase-3.2.1.52
68374beta-glucuronidase-3.2.1.31
68374beta-glucosidase-3.2.1.21
68374lipase+
68374urease-3.5.1.5
68374lysine decarboxylase-4.1.1.18
68374arginine dihydrolase-3.5.3.6
68374ornithine decarboxylase-4.1.1.17
68369cytochrome oxidase+1.9.3.1
68369gelatinase+
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
46156-+---++-------------+

API ID32E

@refODCADH ArgLDC LysURELARLGAT5KGLIPRPbeta GLUMANMALADOPLEbeta GURMNTINDbeta NAGbeta GALGLUSACLARADARLalpha GLUalpha GALTRERHAINOCELSORalphaMALAspA
46156-------++--------------+------++

Isolation, sampling and environmental information

isolation

  • @ref: 46156
  • sample type: Human blood
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Blood

Sequence information

16S sequences

  • @ref: 9129
  • description: Empedobacter brevis 16S ribosomal RNA gene, partial sequence
  • accession: M59052
  • length: 1480
  • database: ena
  • NCBI tax ID: 247

GC content

  • @ref: 9129
  • GC-content: 31.6

External links

@ref: 9129

culture collection no.: DSM 30096, ATCC 14234, CCUG 14814

straininfo link

  • @ref: 74993
  • straininfo: 125764

Reference

@idauthorscataloguedoi/urltitle
9129Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 30096)https://www.dsmz.de/collection/catalogue/details/culture/DSM-30096
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
46156Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 14814)https://www.ccug.se/strain?id=14814
68369Automatically annotated from API 20NE
68374Automatically annotated from API ID32E
74993Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID125764.1StrainInfo: A central database for resolving microbial strain identifiers