Strain identifier
BacDive ID: 5498
Type strain: 
Species: Cellulophaga lytica
Strain Designation: WFB -21
Strain history: <- H. Reichenbach, Cy l1 <- ATCC <- R.A. Lewin, WFB -21
NCBI tax ID(s): 979 (species)
version 8.1 (current version)
General
@ref: 683
BacDive-ID: 5498
DSM-Number: 2040
keywords: 16S sequence, Bacteria
description: Cellulophaga lytica WFB -21 is a bacterium that was isolated from sea-water aquarium outflow.
NCBI tax id
- NCBI tax id: 979
- Matching level: species
strain history
- @ref: 683
- history: <- H. Reichenbach, Cy l1 <- ATCC <- R.A. Lewin, WFB -21
doi: 10.13145/bacdive5498.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Cellulophaga
- species: Cellulophaga lytica
- full scientific name: Cellulophaga lytica (Lewin 1969) Johansen et al. 1999
synonyms
- @ref: 20215
- synonym: Cytophaga lytica
@ref: 683
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Cellulophaga
species: Cellulophaga lytica
full scientific name: Cellulophaga lytica (Lewin 1969) Johansen et al. 1999 emend. Hahnke et al. 2016
strain designation: WFB -21
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 683 | CYTOPHAGA (marine) MEDIUM (DSMZ Medium 172) | yes | https://mediadive.dsmz.de/medium/172 | Name: CYTOPHAGA (marine) MEDIUM (DSMZ Medium 172) Composition: NaCl 24.7 g/l Agar 15.0 g/l MgSO4 x 7 H2O 6.3 g/l MgCl2 x 6 H2O 4.6 g/l CaCl2 x 2 H2O 1.2 g/l Yeast extract 1.0 g/l Tryptone 1.0 g/l KCl 0.7 g/l NaHCO3 0.2 g/l Distilled water |
| 683 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | yes | https://mediadive.dsmz.de/medium/514 | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water |
culture temp
- @ref: 683
- growth: positive
- type: growth
- temperature: 20-30
Isolation, sampling and environmental information
isolation
- @ref: 683
- sample type: sea-water aquarium outflow
- geographic location: California, La Jolla
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Built environment | #Water reservoir (Aquarium/pool) |
| #Environmental | #Aquatic | #Marine |
taxonmaps
- @ref: 69479
- File name: preview.99_406.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_102;96_275;97_304;98_338;99_406&stattab=map
- Last taxonomy: Cellulophaga
- 16S sequence: AB681017
- Sequence Identity:
- Total samples: 3788
- soil counts: 208
- aquatic counts: 3313
- animal counts: 185
- plant counts: 82
Safety information
risk assessment
- @ref: 683
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Cellulophaga lytica gene for 16S rRNA, partial sequence, strain: NBRC 15986
- accession: AB681017
- length: 1445
- database: ena
- NCBI tax ID: 979
GC content
- @ref: 683
- GC-content: 34.2
External links
@ref: 683
culture collection no.: DSM 2040, ATCC 23169, IFO 15986, NBRC 15986, Cy l1
straininfo link
- @ref: 74983
- straininfo: 7338
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 683 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2040) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-2040 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 74983 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID7338.1 | StrainInfo: A central database for resolving microbial strain identifiers |