Strain identifier
BacDive ID: 5497
Type strain: 
Species: Cellulophaga lytica
Strain history: <- H. Reichenbach, Cy l2
NCBI tax ID(s): 979 (species)
version 9 (current version)
General
@ref: 682
BacDive-ID: 5497
DSM-Number: 2039
keywords: 16S sequence, Bacteria
description: Cellulophaga lytica DSM 2039 is a bacterium that was isolated from sandy mud of beach.
NCBI tax id
- NCBI tax id: 979
- Matching level: species
strain history
- @ref: 682
- history: <- H. Reichenbach, Cy l2
doi: 10.13145/bacdive5497.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Cellulophaga
- species: Cellulophaga lytica
- full scientific name: Cellulophaga lytica (Lewin 1969) Johansen et al. 1999
synonyms
- @ref: 20215
- synonym: Cytophaga lytica
@ref: 682
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Cellulophaga
species: Cellulophaga lytica
full scientific name: Cellulophaga lytica (Lewin 1969) Johansen et al. 1999 emend. Hahnke et al. 2016
type strain: no
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 682 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | yes | https://mediadive.dsmz.de/medium/514 | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water |
| 682 | CYTOPHAGA (marine) MEDIUM (DSMZ Medium 172) | yes | https://mediadive.dsmz.de/medium/172 | Name: CYTOPHAGA (marine) MEDIUM (DSMZ Medium 172) Composition: NaCl 24.7 g/l Agar 15.0 g/l MgSO4 x 7 H2O 6.3 g/l MgCl2 x 6 H2O 4.6 g/l CaCl2 x 2 H2O 1.2 g/l Yeast extract 1.0 g/l Tryptone 1.0 g/l KCl 0.7 g/l NaHCO3 0.2 g/l Distilled water |
| 36876 | MEDIUM 192 - for Alteromonas rubra | yes | Distilled water make up to (250.000 ml);Agar (15.000 g);Yeast extract (3.000 g);Peptone (5.000 g);Synthetic sea solution - M0216 (750.000 ml) |
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 682 | positive | growth | 20-30 |
| 36876 | positive | growth | 25 |
Isolation, sampling and environmental information
isolation
- @ref: 682
- sample type: sandy mud of beach
- geographic location: Harwich, Eastern coast
- country: United Kingdom
- origin.country: GBR
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Coast |
| #Environmental | #Terrestrial | #Mud (Sludge) |
| #Environmental | #Terrestrial | #Sandy |
taxonmaps
- @ref: 69479
- File name: preview.99_406.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_102;96_275;97_304;98_338;99_406&stattab=map
- Last taxonomy: Cellulophaga
- 16S sequence: AB681016
- Sequence Identity:
- Total samples: 3788
- soil counts: 208
- aquatic counts: 3313
- animal counts: 185
- plant counts: 82
Safety information
risk assessment
- @ref: 682
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Cellulophaga lytica gene for 16S rRNA, partial sequence, strain: NBRC 15985
- accession: AB681016
- length: 1445
- database: nuccore
- NCBI tax ID: 979
External links
@ref: 682
culture collection no.: DSM 2039, IFO 15985, NBRC 15985, Cy l2
literature
- topic: Phylogeny
- Pubmed-ID: 2978296
- title: Beta-subunit of ATP-synthase: a useful marker for studying the phylogenetic relationship of eubacteria.
- authors: Amann R, Ludwig W, Schleifer KH
- journal: J Gen Microbiol
- DOI: 10.1099/00221287-134-10-2815
- year: 1988
- mesh: Adenosine Triphosphatases/*genetics, Amino Acid Sequence, Bacteroides fragilis/*genetics, Base Sequence, Cytophaga/*genetics, Flavobacterium/*genetics, *Genes, Bacterial, Molecular Sequence Data, Phylogeny
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 682 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2039) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-2039 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 36876 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/15662 | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta |