Strain identifier
BacDive ID: 548
Type strain: 
Species: Alkalibacillus halophilus
Strain history: <- WJ Li, Yunnan Inst. Microbiol., China
NCBI tax ID(s): 368977 (species)
version 8.1 (current version)
General
@ref: 6839
BacDive-ID: 548
DSM-Number: 17369
keywords: 16S sequence, Bacteria, aerobe, spore-forming, mesophilic, motile, rod-shaped
description: Alkalibacillus halophilus DSM 17369 is an aerobe, spore-forming, mesophilic bacterium that was isolated from saline soil.
NCBI tax id
- NCBI tax id: 368977
- Matching level: species
strain history
| @ref | history |
|---|---|
| 6839 | <- W.-J. Li, Yunnan Univ., Kunming, Yunnan Inst. Microbiol. (YIM), China; YIM 012 |
| 67771 | <- WJ Li, Yunnan Inst. Microbiol., China |
doi: 10.13145/bacdive548.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Alkalibacillus
- species: Alkalibacillus halophilus
- full scientific name: Alkalibacillus halophilus Tian et al. 2009
@ref: 6839
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Alkalibacillus
species: Alkalibacillus halophilus
full scientific name: Alkalibacillus halophilus Tian et al. 2009
type strain: yes
Morphology
cell morphology
| @ref | cell shape | motility | gram stain |
|---|---|---|---|
| 67771 | rod-shaped | yes | |
| 67771 | positive |
Culture and growth conditions
culture medium
- @ref: 6839
- name: HALOBACTERIA MEDIUM (DSMZ Medium 372)
- growth: yes
- link: https://mediadive.dsmz.de/medium/372
- composition: Name: HALOBACTERIA MEDIUM (DSMZ Medium 372) Composition: NaCl 200.0 g/l MgSO4 x 7 H2O 20.0 g/l Agar 20.0 g/l Yeast extract 5.0 g/l Casamino acids 5.0 g/l Na3-citrate 3.0 g/l KCl 2.0 g/l Na glutamate 1.0 g/l FeCl2 x 4 H2O 0.036 g/l MnCl2 x 4 H2O 0.00036 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 6839 | positive | growth | 30 | mesophilic |
| 67771 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
spore formation
- @ref: 67771
- type of spore: spore
- spore formation: yes
observation
- @ref: 67771
- observation: quinones: MK-7
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 6839 | saline soil | Qinghai Province | China | CHN | Asia |
| 67771 | From hypersaline soil | Xinjiang Province | China | CHN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Soil |
| #Condition | #Saline |
Safety information
risk assessment
- @ref: 6839
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Alkalibacillus sp. YIM 012 16S ribosomal RNA gene, partial sequence | DQ359731 | 1506 | ena | 368977 |
| 6839 | Pseudomonas migulae isolate PD 1 16S ribosomal RNA gene, partial sequence | DQ377742 | 1404 | ena | 78543 |
GC content
| @ref | GC-content | method |
|---|---|---|
| 6839 | 39 | |
| 67771 | 39.0 | thermal denaturation, midpoint method (Tm) |
External links
@ref: 6839
culture collection no.: DSM 17369, KCTC 3990, YIM 012
straininfo link
- @ref: 70226
- straininfo: 397637
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 17027220 | Alkalibacillus halophilus sp. nov., a new halophilic species isolated from hypersaline soil in Xin-Jiang province, China. | Tian XP, Dastager SG, Lee JC, Tang SK, Zhang YQ, Park DJ, Kim CJ, Li WJ | Syst Appl Microbiol | 10.1016/j.syapm.2006.08.003 | 2006 | Bacillus/*classification/genetics/growth & development/isolation & purification, China, Hydrogen-Ion Concentration, Molecular Sequence Data, Phylogeny, Sodium Chloride, *Soil Microbiology, Species Specificity | Genetics |
| Phylogeny | 24670895 | Alkalibacillus almallahensis sp. nov., a halophilic bacterium isolated from an inland solar saltern. | Perez-Davo A, Aguilera M, Ramos-Cormenzana A, Monteoliva-Sanchez M | Int J Syst Evol Microbiol | 10.1099/ijs.0.059121-0 | 2014 | Bacillaceae/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salinity, Sequence Analysis, DNA, Sodium Chloride, Spain, Vitamin K 2/analogs & derivatives/chemistry, *Water Microbiology | Genetics |
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 6839 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17369) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17369 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||||
| 70226 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID397637.1 | StrainInfo: A central database for resolving microbial strain identifiers |