Archive BacDiveID:10.13145/bacdive5471.20230509.8.1

Strain identifier

BacDive ID: 5471

Type strain:

Species: Reichenbachiella faecimaris

Strain history: I.-T. Cha PCP11.

NCBI tax ID(s): 692418 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 18166

BacDive-ID: 5471

DSM-Number: 26133

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative

description: Reichenbachiella faecimaris DSM 26133 is a mesophilic, Gram-negative bacterium that was isolated from tidal flat sediment.

NCBI tax id

NCBI tax id: 692418
Matching level: species

strain history

@ref	history
18166	<- JCM <- I.-T. Cha; PCP11
67770	I.-T. Cha PCP11.

doi: 10.13145/bacdive5471.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/bacteroidota
domain: Bacteria
phylum: Bacteroidota
class: Cytophagia
order: Cytophagales
family: Reichenbachiellaceae
genus: Reichenbachiella
species: Reichenbachiella faecimaris
full scientific name: Reichenbachiella faecimaris Cha et al. 2011

@ref: 18166

domain: Bacteria

phylum: Bacteroidetes

class: Cytophagia

order: Cytophagales

family: Reichenbachiellaceae

genus: Reichenbachiella

species: Reichenbachiella faecimaris

full scientific name: Reichenbachiella faecimaris Cha et al. 2011

type strain: yes

Morphology

cell morphology

@ref: 69480
gram stain: negative
confidence: 99.995

multimedia

@ref: 18166
multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_26133.jpg
intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@ref: 18166
name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
growth: yes
link: https://mediadive.dsmz.de/medium/514
composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@ref	growth	type	temperature	range
18166	positive	growth	28	mesophilic
67770	positive	growth	30	mesophilic

Physiology and metabolism

spore formation

@ref	spore formation	confidence
69481	no	100
69480	no	99.972

observation

@ref: 67770
observation: quinones: MK-7

Isolation, sampling and environmental information

isolation

@ref	sample type	geographic location	country	origin.country	continent	latitude	longitude
18166	tidal flat sediment	Yellow Sea, Muchangpo region	Republic of Korea	KOR	Asia	36.2411	126.532
67770	Tidal flat of the Yellow Sea		Republic of Korea	KOR	Asia

isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Tidal flat
#Environmental	#Terrestrial	#Sediment

taxonmaps

@ref: 69479
File name: preview.99_5243.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_508;96_2547;97_3112;98_3909;99_5243&stattab=map
Last taxonomy: Reichenbachiella faecimaris subclade
16S sequence: GU143096
Sequence Identity:
Total samples: 3439
soil counts: 130
aquatic counts: 1214
animal counts: 2065
plant counts: 30

Safety information

risk assessment

@ref: 18166
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 18166
description: Reichenbachiella faecimaris strain PCP11 16S ribosomal RNA gene, partial sequence
accession: GU143096
length: 1429
database: ena
NCBI tax ID: 692418

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Reichenbachiella faecimaris strain DSM 26133	692418.3	wgs	patric	692418
66792	Reichenbachiella faecimaris DSM 26133	2619619645	draft	img	692418
67770	Reichenbachiella faecimaris DSM 26133	GCA_900176375	scaffold	ncbi	692418

GC content

@ref: 18166
GC-content: 39.6
method: high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

trait	prediction	confidence	training_data
spore-forming	no	100	no
gram-positive	no	96.561	no
anaerobic	no	98.822	no
halophile	no	70.275	no
spore-forming	no	94.509	no
glucose-util	yes	88.412	no
thermophile	no	94.912	yes
flagellated	no	96.387	no
motile	no	90.721	no
aerobic	yes	90.85	no
glucose-ferment	no	86.26	no

External links

@ref: 18166

culture collection no.: DSM 26133, JCM 16588, KACC 14523, PCP 11

straininfo link

@ref: 74959
straininfo: 402298

literature

topic	Pubmed-ID	title	authors	journal	DOI	year	mesh	topic2
Phylogeny	20851915	Reichenbachiella faecimaris sp. nov., isolated from a tidal flat, and emended descriptions of the genus Reichenbachiella and Reichenbachiella agariperforans.	Cha IT, Oh YS, Park SJ, Park BJ, Lee JK, Lim CS, Park AR, Yoo JS, Lee DH, Rhee SK, Roh DH	Int J Syst Evol Microbiol	10.1099/ijs.0.026849-0	2010	Cytophagaceae/classification/genetics/isolation & purification/metabolism, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Fatty Acids/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology	Metabolism
Phylogeny	30231957	Reichenbachiella versicolor sp. nov., isolated from red alga.	Shi MJ, Wang C, Liu ZY, Jiang LX, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003023	2018	Bacterial Typing Techniques, Base Composition, China, Cytophagaceae/classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Rhodophyta/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistry	Transcriptome

Reference

@id	authors	catalogue	doi/url	title	journal	pubmed
18166	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26133)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-26133
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg		10.1093/nar/gkaa1025	BRENDA, the ELIXIR core data resource in 2021: new developments and updates	Nucleic Acids Res. 49: D498-D508 2020	33211880
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.		https://microbeatlas.org/	MicrobeAtlas 1.0 beta
69480	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481	Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch		10.21203/rs.3.rs-2527258/v1	Predictions based on the model GenomeNet Sporulation v. 1
74959	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID402298.1	StrainInfo: A central database for resolving microbial strain identifiers