Strain identifier
BacDive ID: 5468
Type strain: 
Species: Thermonema rossianum
Strain Designation: AG3-1
Strain history: <- M.S. Da Costa, University of Coimbra
NCBI tax ID(s): 55505 (species)
version 8.1 (current version)
General
@ref: 3888
BacDive-ID: 5468
DSM-Number: 10299
keywords: 16S sequence, Bacteria, thermophilic
description: Thermonema rossianum AG3-1 is a thermophilic bacterium that was isolated from saline hot springs.
NCBI tax id
- NCBI tax id: 55505
- Matching level: species
strain history
- @ref: 3888
- history: <- M.S. Da Costa, University of Coimbra
doi: 10.13145/bacdive5468.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Cytophagia
- order: Cytophagales
- family: Thermonemataceae
- genus: Thermonema
- species: Thermonema rossianum
- full scientific name: Thermonema rossianum Nobre et al. 1997
@ref: 3888
domain: Bacteria
phylum: Bacteroidetes
class: Cytophagia
order: Cytophagales
family: Thermonemataceae
genus: Thermonema
species: Thermonema rossianum
full scientific name: Thermonema rossianum Nobre et al. 1997 emend. Hahnke et al. 2016
strain designation: AG3-1
type strain: no
Culture and growth conditions
culture medium
- @ref: 3888
- name: THERMUS 162 MEDIUM (DSMZ Medium 878)
- growth: yes
- link: https://mediadive.dsmz.de/medium/878
- composition: Name: THERMUS 162 MEDIUM (DSMZ Medium 878) Composition: Agar 28.0 g/l Na2HPO4 x 12 H2O 4.3 g/l Yeast extract 1.0 g/l Tryptone 1.0 g/l KH2PO4 0.544 g/l MgCl2 x 6 H2O 0.2 g/l Nitrilotriacetic acid 0.1 g/l CaSO4 x 2 H2O 0.04 g/l Fe(III) citrate 0.00122472 g/l MnSO4 x H2O 0.00114 g/l ZnSO4 x 7 H2O 0.00025 g/l H3BO3 0.00025 g/l CoCl2 x 6 H2O 2.25e-05 g/l CuSO4 x 5 H2O 1.25e-05 g/l Na2MoO4 x 2 H2O 1.25e-05 g/l H2SO4 Distilled water
culture temp
- @ref: 3888
- growth: positive
- type: growth
- temperature: 50
- range: thermophilic
Isolation, sampling and environmental information
isolation
- @ref: 3888
- sample type: saline hot springs
- geographic location: Bay of Naples
- country: Italy
- origin.country: ITA
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Thermal spring |
| #Condition | #Saline | |
| #Condition | #Thermophilic (>45°C) |
taxonmaps
- @ref: 69479
- File name: preview.99_74942.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6181;96_27429;97_34504;98_44485;99_74942&stattab=map
- Last taxonomy: Thermonema rossianum subclade
- 16S sequence: Y08958
- Sequence Identity:
- Total samples: 193
- soil counts: 1
- aquatic counts: 157
- animal counts: 35
Safety information
risk assessment
- @ref: 3888
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 3888
- description: T.rossianum 16S rRNA gene (strain AG3-1)
- accession: Y08958
- length: 1465
- database: ena
- NCBI tax ID: 55505
External links
@ref: 3888
culture collection no.: DSM 10299
straininfo link
- @ref: 74956
- straininfo: 48798
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 3888 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10299) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-10299 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 74956 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID48798.1 | StrainInfo: A central database for resolving microbial strain identifiers |