Strain identifier
BacDive ID: 5438
Type strain: 
Species: Eubacterium oxidoreducens
Strain Designation: G41
Strain history: <- M.P. Bryant, G41
NCBI tax ID(s): 1732 (species)
version 8.1 (current version)
General
@ref: 1311
BacDive-ID: 5438
DSM-Number: 3217
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-positive
description: Eubacterium oxidoreducens G41 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from rumen of cattle.
NCBI tax id
- NCBI tax id: 1732
- Matching level: species
strain history
- @ref: 1311
- history: <- M.P. Bryant, G41
doi: 10.13145/bacdive5438.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Eubacteriaceae
- genus: Eubacterium
- species: Eubacterium oxidoreducens
- full scientific name: Eubacterium oxidoreducens corrig. Krumholz and Bryant 1986
synonyms
- @ref: 20215
- synonym: Eubacterium oxidoreducans
@ref: 1311
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Eubacteriaceae
genus: Eubacterium
species: Eubacterium oxidoreducens
full scientific name: Eubacterium oxidoreducens Krumholz and Bryant 1986
strain designation: G41
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
colony morphology
- @ref: 1311
- incubation period: 3-7 days
Culture and growth conditions
culture medium
- @ref: 1311
- name: EUBACTERIUM OXIDOREDUCENS MEDIUM (DSMZ Medium 335)
- growth: yes
- link: https://mediadive.dsmz.de/medium/335
- composition: Name: EUBACTERIUM OXIDOREDUCENS MEDIUM (DSMZ Medium 335) Composition: Crotonic acid 4.98504 g/l NaHCO3 4.98504 g/l Yeast extract 1.99402 g/l KH2PO4 0.498504 g/l NH4Cl 0.398804 g/l NaCl 0.398804 g/l MgCl2 x 6 H2O 0.329013 g/l L-Cysteine HCl x H2O 0.239282 g/l Na2S x 9 H2O 0.0777667 g/l CaCl2 x 2 H2O 0.0498504 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l Resazurin 0.000997012 g/l Pyridoxine hydrochloride 0.000299103 g/l Thiamine-HCl x 2 H2O 0.000199402 g/l Nicotinic acid 0.000199402 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l Calcium pantothenate 9.97009e-05 g/l Vitamin B12 9.97009e-05 g/l p-Aminobenzoic acid 7.97607e-05 g/l ZnCl2 6.97906e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l D-(+)-biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Distilled water
culture temp
- @ref: 1311
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 1311 | anaerobe | |
| 69480 | anaerobe | 98.292 |
spore formation
- @ref: 69480
- spore formation: no
- confidence: 99.967
Isolation, sampling and environmental information
isolation
- @ref: 1311
- sample type: rumen of cattle
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Mammals | #Bovinae (Cow, Cattle) |
| #Host Body-Site | #Organ | #Rumen |
taxonmaps
- @ref: 69479
- File name: preview.99_117935.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_16;96_33338;97_42266;98_55188;99_117935&stattab=map
- Last taxonomy: Eubacterium oxidoreducens subclade
- 16S sequence: FR733672
- Sequence Identity:
- Total samples: 1232
- soil counts: 17
- aquatic counts: 19
- animal counts: 1141
- plant counts: 55
Safety information
risk assessment
- @ref: 1311
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Eubacterium oxidoreducens partial 16S rRNA gene, type strain DSM3217T
- accession: FR733672
- length: 1521
- database: ena
- NCBI tax ID: 1732
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Eubacterium oxidoreducens DSM 3217 | GCA_900104415 | scaffold | ncbi | 1732 |
| 66792 | Eubacterium oxidoreducens strain DSM 3217 | 1732.3 | wgs | patric | 1732 |
| 66792 | Eubacterium oxidoreducens DSM 3217 | 2593339221 | draft | img | 1732 |
GC content
- @ref: 1311
- GC-content: 35.7
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 67 | no |
| motile | yes | 76.623 | no |
| flagellated | no | 69.323 | no |
| gram-positive | yes | 64.881 | no |
| anaerobic | yes | 99.626 | no |
| aerobic | no | 98.51 | yes |
| halophile | no | 87.643 | no |
| spore-forming | yes | 58.041 | no |
| glucose-ferment | yes | 56.306 | no |
| thermophile | no | 88.857 | no |
| glucose-util | yes | 73.669 | no |
External links
@ref: 1311
culture collection no.: DSM 3217
straininfo link
- @ref: 74926
- straininfo: 47701
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 1311 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3217) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-3217 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 74926 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47701.1 | StrainInfo: A central database for resolving microbial strain identifiers |