Strain identifier
BacDive ID: 5436
Type strain: 
Species: Clostridium nitritogenes
Strain Designation: TA 20A
Strain history: T. Mitsuoka <-- ATCC 25547 <-- L. V. Holdeman VPI 0263 <-- A. Prévot TA 20A.
NCBI tax ID(s): 83340 (species)
version 8.1 (current version)
General
@ref: 1543
BacDive-ID: 5436
DSM-Number: 3985
keywords: 16S sequence, Bacteria, anaerobe, mesophilic
description: Clostridium nitritogenes TA 20A is an anaerobe, mesophilic bacterium that was isolated from antarctic soil.
NCBI tax id
- NCBI tax id: 83340
- Matching level: species
strain history
| @ref | history |
|---|---|
| 1543 | <- ATCC <- L.V. Holdeman, VPI 0263 <- A. Prévot, TA 20A |
| 67770 | T. Mitsuoka <-- ATCC 25547 <-- L. V. Holdeman VPI 0263 <-- A. Prévot TA 20A. |
doi: 10.13145/bacdive5436.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium nitritogenes
- full scientific name: Clostridium nitritogenes (Prévot 1940) Bernard et al. 2018
synonyms
- @ref: 20215
- synonym: Eubacterium nitritogenes
@ref: 1543
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Clostridium
species: Clostridium nitritogenes
full scientific name: Clostridium nitritogenes (Prévot 1940) Bernard et al. 2018
strain designation: TA 20A
type strain: yes
Culture and growth conditions
culture medium
- @ref: 1543
- name: PYG MEDIUM (MODIFIED) (DSMZ Medium 104)
- growth: yes
- link: https://mediadive.dsmz.de/medium/104
- composition: Name: PYG MEDIUM (modified) (DSMZ Medium 104; with strain-specific modifications) Composition: Yeast extract 10.0 g/l Maltose 5.0 g/l Trypticase peptone 5.0 g/l Peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Vitamin K1 NaOH Tween 80 Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 1543 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 1543
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type |
|---|---|
| 1543 | antarctic soil |
| 67770 | Antarctic soil |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Soil |
| #Condition | #Psychrophilic (<10°C) | |
| #Climate | #Cold | #Polar |
taxonmaps
- @ref: 69479
- File name: preview.99_3386.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_34;96_1766;97_2114;98_2594;99_3386&stattab=map
- Last taxonomy: Clostridium baratii
- 16S sequence: LC480784
- Sequence Identity:
- Total samples: 11853
- soil counts: 585
- aquatic counts: 927
- animal counts: 10123
- plant counts: 218
Safety information
risk assessment
- @ref: 1543
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Eubacterium nitritogenes gene for 16S rRNA, partial sequence | AB018185 | 1477 | ena | 83340 |
| 67770 | Clostridium nitritogenes JCM 6485 gene for 16S ribosomal RNA, partial sequence | LC480784 | 1475 | ena | 83340 |
External links
@ref: 1543
culture collection no.: DSM 3985, ATCC 25547, VPI 0263, JCM 6485
straininfo link
- @ref: 74924
- straininfo: 38590
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 1543 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3985) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-3985 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 74924 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID38590.1 | StrainInfo: A central database for resolving microbial strain identifiers |