Strain identifier
BacDive ID: 5427
Type strain:
Species: Anaerostipes hadrus
Strain Designation: VP 82-52
Strain history: <- DSM <- ATCC <- LV Holdeman, VPI 82-52
NCBI tax ID(s): 649757 (strain), 649756 (species)
General
@ref: 1356
BacDive-ID: 5427
DSM-Number: 3319
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, rod-shaped
description: Anaerostipes hadrus VP 82-52 is an anaerobe, mesophilic, rod-shaped bacterium that was isolated from human faeces.
NCBI tax id
NCBI tax id | Matching level |
---|---|
649757 | strain |
649756 | species |
strain history
@ref | history |
---|---|
1356 | <- ATCC <- L.V. Holdeman, VPI 82-52 |
67771 | <- DSM <- ATCC <- LV Holdeman, VPI 82-52 |
doi: 10.13145/bacdive5427.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Lachnospiraceae
- genus: Anaerostipes
- species: Anaerostipes hadrus
- full scientific name: Anaerostipes hadrus (Moore et al. 1976) Allen-Vercoe et al. 2013
synonyms
- @ref: 20215
- synonym: Eubacterium hadrum
@ref: 1356
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Lachnospiraceae
genus: Anaerostipes
species: Anaerostipes hadrus
full scientific name: Anaerostipes hadrus (Moore et al. 1976) Allen-Vercoe et al. 2013
strain designation: VP 82-52
type strain: yes
Morphology
cell morphology
@ref | cell shape | motility | gram stain |
---|---|---|---|
67771 | rod-shaped | no | |
67771 | positive |
Culture and growth conditions
culture medium
- @ref: 1356
- name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)
- growth: yes
- link: https://mediadive.dsmz.de/medium/110
- composition: Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
1356 | positive | growth | 37 | mesophilic |
67771 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
1356 | anaerobe |
67771 | anaerobe |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68380 | 16199 | urea | - | hydrolysis |
68380 | 16024 | D-mannose | - | fermentation |
68380 | 16634 | raffinose | - | fermentation |
68380 | 29985 | L-glutamate | - | degradation |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68380 | serine arylamidase | - | |
68380 | glutamyl-glutamate arylamidase | - | |
68380 | histidine arylamidase | - | |
68380 | alanine arylamidase | - | 3.4.11.2 |
68380 | tyrosine arylamidase | - | |
68380 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68380 | leucine arylamidase | - | 3.4.11.1 |
68380 | phenylalanine arylamidase | - | |
68380 | leucyl glycin arylamidase | - | 3.4.11.1 |
68380 | proline-arylamidase | - | 3.4.11.5 |
68380 | L-arginine arylamidase | - | |
68380 | alkaline phosphatase | - | 3.1.3.1 |
68380 | alpha-fucosidase | - | 3.2.1.51 |
68380 | glutamate decarboxylase | - | 4.1.1.15 |
68380 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68380 | beta-glucuronidase | - | 3.2.1.31 |
68380 | alpha-arabinosidase | - | 3.2.1.55 |
68380 | beta-glucosidase | - | 3.2.1.21 |
68380 | alpha-glucosidase | - | 3.2.1.20 |
68380 | beta-Galactosidase 6-phosphate | + | |
68380 | beta-galactosidase | + | 3.2.1.23 |
68380 | alpha-galactosidase | - | 3.2.1.22 |
68380 | urease | - | 3.5.1.5 |
API rID32A
@ref | URE | ADH Arg | alpha GAL | beta GAL | beta GP | alpha GLU | beta GLU | alpha ARA | beta GUR | beta NAG | MNE | RAF | GDC | alpha FUC | PAL | ArgA | ProA | LGA | PheA | LeuA | PyrA | TyrA | AlaA | HisA | GGA | SerA |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1356 | - | +/- | - | + | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type |
---|---|
1356 | human faeces |
67771 | From human faeces |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | |
#Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
taxonmaps
- @ref: 69479
- File name: preview.99_2505.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_33;96_1350;97_1603;98_1949;99_2505&stattab=map
- Last taxonomy: Anaerostipes hadrus subclade
- 16S sequence: FR749934
- Sequence Identity:
- Total samples: 55629
- soil counts: 188
- aquatic counts: 983
- animal counts: 54372
- plant counts: 86
Safety information
risk assessment
- @ref: 1356
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Eubacterium hadrum partial 16S rRNA gene, type strain DSM 3319T, clone 1 | FR749932 | 1616 | ena | 649757 |
20218 | Eubacterium hadrum partial 16S rRNA gene, type strain DSM 3319T, clone 2 | FR749933 | 1618 | ena | 649757 |
20218 | Eubacterium hadrum partial 16S rRNA gene, type strain DSM 3319T, clone 3 | FR749934 | 1515 | ena | 649757 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Anaerostipes hadrus DSM 3319 | 649757.3 | wgs | patric | 649757 |
66792 | Anaerostipes hadrus comb. nov. VPI 82-52, DSM 3319 | 2534681714 | draft | img | 649757 |
67771 | Anaerostipes hadrus ATCC 29173 = JCM 17467 DSM 3319 | GCA_000332875 | scaffold | ncbi | 649757 |
GC content
- @ref: 1356
- GC-content: 32.0
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
gram-positive | yes | 89.407 | no |
anaerobic | yes | 99.118 | yes |
halophile | no | 63.612 | no |
spore-forming | no | 63.774 | no |
glucose-util | yes | 93.007 | no |
thermophile | no | 97.098 | yes |
flagellated | no | 92.726 | no |
aerobic | no | 98.8 | yes |
motile | no | 92.267 | yes |
glucose-ferment | yes | 68.798 | no |
External links
@ref: 1356
culture collection no.: DSM 3319, ATCC 29173, KCTC 15606, VPI 82-52, JCM 9980, KCTC 15009
straininfo link
- @ref: 74915
- straininfo: 39388
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 22982042 | Anaerostipes hadrus comb. nov., a dominant species within the human colonic microbiota; reclassification of Eubacterium hadrum Moore et al. 1976. | Allen-Vercoe E, Daigneault M, White A, Panaccione R, Duncan SH, Flint HJ, O'Neal L, Lawson PA | Anaerobe | 10.1016/j.anaerobe.2012.09.002 | 2012 | Bacterial Typing Techniques, Butyrates/metabolism, Cluster Analysis, Colon/*microbiology, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Female, Genotype, Gram-Positive Bacteria/*classification/genetics/*isolation & purification/physiology, Humans, Middle Aged, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Genetics |
Phylogeny | 30351260 | Reclassification of Eubacterium hallii as Anaerobutyricum hallii gen. nov., comb. nov., and description of Anaerobutyricum soehngenii sp. nov., a butyrate and propionate-producing bacterium from infant faeces. | Shetty SA, Zuffa S, Bui TPN, Aalvink S, Smidt H, De Vos WM | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003041 | 2018 | Bacterial Typing Techniques, Base Composition, Butyrates/metabolism, DNA, Bacterial/genetics, Eubacterium/*classification/metabolism, Fatty Acids/chemistry, Feces/*microbiology, Humans, Infant, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, Phosphatidylglycerols/chemistry, *Phylogeny, Propionates/metabolism, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Metabolism |
Phylogeny | 34491487 | Description of Anaerostipes faecalis sp. nov., a new segmented filamentous bacterium isolated from swine faeces. | Choi SH, Choi JY, Park JE, Kim JS, Kang SW, Lee J, Lee MK, Lee JS, Lee JH, Jung H, Hur TY, Kim HB, Lee JH, Kim JK, Hong Y, Park SH | Antonie Van Leeuwenhoek | 10.1007/s10482-021-01646-z | 2021 | Animals, Bacterial Typing Techniques, Clostridiales, DNA, Bacterial/genetics, *Fatty Acids/analysis, Feces, *Phospholipids, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Swine | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
1356 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3319) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-3319 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||||
68380 | Automatically annotated from API rID32A | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
74915 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID39388.1 | StrainInfo: A central database for resolving microbial strain identifiers |