Strain identifier

BacDive ID: 5410

Type strain: No

Species: Acetobacterium dehalogenans

Strain Designation: MC

Strain history: <- G. Diekert, Universität Stuttgart, Institut für Mikrobiologie, Stuttgart, Germany; MC <- G. Diekert {1990}

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 4402

BacDive-ID: 5410

DSM-Number: 11527

keywords: genome sequence, Bacteria, anaerobe, Gram-positive

description: Acetobacterium dehalogenans MC is an anaerobe, Gram-positive bacterium that was isolated from sewage digester sludge.

NCBI tax id

NCBI tax idMatching level
82116species
1068975strain

strain history

  • @ref: 4402
  • history: <- G. Diekert, Universität Stuttgart, Institut für Mikrobiologie, Stuttgart, Germany; MC <- G. Diekert {1990}

doi: 10.13145/bacdive5410.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Eubacteriaceae
  • genus: Acetobacterium
  • species: Acetobacterium dehalogenans
  • full scientific name: Acetobacterium dehalogenans Kaufmann et al. 1998

@ref: 4402

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Eubacteriaceae

genus: Acetobacterium

species: Acetobacterium dehalogenans

full scientific name: Acetobacterium dehalogenans

strain designation: MC

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
4402anaerobe
69480anaerobe99.284

spore formation

@refspore formationconfidence
69481no97
69480no99.345

Isolation, sampling and environmental information

isolation

  • @ref: 4402
  • sample type: sewage digester sludge
  • geographic location: Stuttgart
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Biodegradation
#Engineered#Waste#Sewage sludge

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acetobacterium dehalogenans DSM 11527GCA_000472665scaffoldncbi1068975
66792Acetobacterium dehalogenans DSM 115271068975.11wgspatric1068975
66792Acetobacterium dehalogenans DSM 115272513237154draftimg1068975

GC content

  • @ref: 4402
  • GC-content: 43.8
  • method: sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno97no
motileyes81.049no
flagellatedyes57.163no
gram-positiveyes67.632no
anaerobicyes99.087yes
aerobicno97.963no
halophileno90.755no
spore-formingyes56.098no
thermophileno99.553no
glucose-utilyes75.818no
glucose-fermentyes59.958no

External links

@ref: 4402

culture collection no.: DSM 11527

Reference

@idauthorscataloguedoi/urltitle
4402Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11527)https://www.dsmz.de/collection/catalogue/details/culture/DSM-11527
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1