Strain identifier
BacDive ID: 5410
Type strain:
Species: Acetobacterium dehalogenans
Strain Designation: MC
Strain history: <- G. Diekert, Universität Stuttgart, Institut für Mikrobiologie, Stuttgart, Germany; MC <- G. Diekert {1990}
NCBI tax ID(s): 1068975 (strain), 82116 (species)
General
@ref: 4402
BacDive-ID: 5410
DSM-Number: 11527
keywords: genome sequence, Bacteria, anaerobe, Gram-positive
description: Acetobacterium dehalogenans MC is an anaerobe, Gram-positive bacterium that was isolated from sewage digester sludge.
NCBI tax id
NCBI tax id | Matching level |
---|---|
82116 | species |
1068975 | strain |
strain history
- @ref: 4402
- history: <- G. Diekert, Universität Stuttgart, Institut für Mikrobiologie, Stuttgart, Germany; MC <- G. Diekert {1990}
doi: 10.13145/bacdive5410.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Eubacteriaceae
- genus: Acetobacterium
- species: Acetobacterium dehalogenans
- full scientific name: Acetobacterium dehalogenans Kaufmann et al. 1998
@ref: 4402
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Eubacteriaceae
genus: Acetobacterium
species: Acetobacterium dehalogenans
full scientific name: Acetobacterium dehalogenans
strain designation: MC
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance | confidence |
---|---|---|
4402 | anaerobe | |
69480 | anaerobe | 99.284 |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 97 |
69480 | no | 99.345 |
Isolation, sampling and environmental information
isolation
- @ref: 4402
- sample type: sewage digester sludge
- geographic location: Stuttgart
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Biodegradation | |
#Engineered | #Waste | #Sewage sludge |
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Acetobacterium dehalogenans DSM 11527 | GCA_000472665 | scaffold | ncbi | 1068975 |
66792 | Acetobacterium dehalogenans DSM 11527 | 1068975.11 | wgs | patric | 1068975 |
66792 | Acetobacterium dehalogenans DSM 11527 | 2513237154 | draft | img | 1068975 |
GC content
- @ref: 4402
- GC-content: 43.8
- method: sequence analysis
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 97 | no |
motile | yes | 81.049 | no |
flagellated | yes | 57.163 | no |
gram-positive | yes | 67.632 | no |
anaerobic | yes | 99.087 | yes |
aerobic | no | 97.963 | no |
halophile | no | 90.755 | no |
spore-forming | yes | 56.098 | no |
thermophile | no | 99.553 | no |
glucose-util | yes | 75.818 | no |
glucose-ferment | yes | 59.958 | no |
External links
@ref: 4402
culture collection no.: DSM 11527
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
4402 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11527) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-11527 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 |