Strain identifier
BacDive ID: 5410
Type strain: 
Species: Acetobacterium dehalogenans
Strain Designation: MC
Strain history: <- G. Diekert, Universität Stuttgart, Institut für Mikrobiologie, Stuttgart, Germany; MC <- G. Diekert {1990}
NCBI tax ID(s): 1068975 (strain), 82116 (species)
version 9.3 (current version)
General
@ref: 4402
BacDive-ID: 5410
DSM-Number: 11527
keywords: genome sequence, Bacteria, anaerobe
description: Acetobacterium dehalogenans MC is an anaerobe bacterium that was isolated from sewage digester sludge.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 82116 | species |
| 1068975 | strain |
strain history
- @ref: 4402
- history: <- G. Diekert, Universität Stuttgart, Institut für Mikrobiologie, Stuttgart, Germany; MC <- G. Diekert {1990}
doi: 10.13145/bacdive5410.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Eubacteriaceae
- genus: Acetobacterium
- species: Acetobacterium dehalogenans
- full scientific name: Acetobacterium dehalogenans Kaufmann et al. 1998
@ref: 4402
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Eubacteriaceae
genus: Acetobacterium
species: Acetobacterium dehalogenans
full scientific name: Acetobacterium dehalogenans
strain designation: MC
type strain: no
Physiology and metabolism
oxygen tolerance
- @ref: 4402
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 4402
- sample type: sewage digester sludge
- geographic location: Stuttgart
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Biodegradation | |
| #Engineered | #Waste | #Sewage sludge |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Acetobacterium dehalogenans DSM 11527 | GCA_000472665 | scaffold | ncbi | 1068975 |
| 66792 | Acetobacterium dehalogenans DSM 11527 | 1068975.11 | wgs | patric | 1068975 |
| 66792 | Acetobacterium dehalogenans DSM 11527 | 2513237154 | draft | img | 1068975 |
GC content
- @ref: 4402
- GC-content: 43.8
- method: sequence analysis
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | microaerophile | 85.8 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | variable | 86.6 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | yes | 53.4 | |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | yes | 56 | |
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 59.849 | no |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 89.274 | yes |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 93.354 | yes |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 53.815 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 89.124 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | yes | 64.777 | no |
External links
@ref: 4402
culture collection no.: DSM 11527
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 4402 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11527) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-11527 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |