Strain identifier

BacDive ID: 5407

Type strain: Yes

Species: Acetobacterium paludosum

Strain Designation: Z-4092, Z-B12

Culture col. no.: DSM 8237

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General

@ref: 3214

BacDive-ID: 5407

DSM-Number: 8237

keywords: Bacteria, 16S sequence, genome sequence, anaerobe, psychrophilic

description: Acetobacterium paludosum Z-4092 is an anaerobe, psychrophilic bacterium that was isolated from bog sediment.

strain history: <- A. N. Nozhevnikova; Z-B12

doi: 10.13145/bacdive5407.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/firmicutes
  • domain: Bacteria
  • phylum: Firmicutes
  • class: Clostridia
  • order: Eubacteriales
  • family: Eubacteriaceae
  • genus: Acetobacterium
  • species: Acetobacterium paludosum
  • full scientific name: Acetobacterium paludosum Kotsyurbenko et al. 1997

@ref: 3214

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Eubacteriaceae

genus: Acetobacterium

species: Acetobacterium paludosum

full scientific name: Acetobacterium paludosum Kotsyurbenko et al. 1997

strain designation: Z-4092, Z-B12

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 3214
  • name: ACETOBACTERIUM FIMETARIUM MEDIUM (DSMZ Medium 614), anaerobic
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium614.pdf

culture temp

  • @ref: 3214
  • growth: positive
  • type: growth
  • temperature: 20
  • range: psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 3214
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 3214
  • sample type: bog sediment
  • geographic location: near Moscow
  • country: Russia
  • origin.country: RUS
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Wetland (Swamp)
#Environmental#Terrestrial#Sediment

Safety information

risk assessment

  • @ref: 3214
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 3214
  • description: A.paludosum 16S rRNA gene
  • accession: X96958
  • length: 1459
  • database: ena
  • NCBI tax ID: 52693

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acetobacterium paludosum DSM 8237GCA_008086595contigncbi52693
66792Acetobacterium paludosum strain DSM 823752693.4wgspatric52693

GC content

  • @ref: 3214
  • GC-content: 41.7

External links

@ref: 3214

culture collection no.: DSM 8237

straininfo link

  • @ref: 20218
  • passport: http://www.straininfo.net/strains/121705

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3214Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 8237)https://www.dsmz.de/collection/catalogue/details/culture/DSM-8237
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)