We are hiring!

Strain identifier

BacDive ID: 5401

Type strain: Yes

Species: Acetobacterium wieringae

Strain Designation: C

Strain history: <- M. Braun, strain C

NCBI tax ID(s): 52694 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 7.1 (current version):
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 7.1 (current version)

General

@ref: 924

BacDive-ID: 5401

DSM-Number: 1911

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic

description: Acetobacterium wieringae C is an anaerobe, mesophilic bacterium that was isolated from anaerobic sewage digester.

NCBI tax id

  • NCBI tax id: 52694
  • Matching level: species

strain history: <- M. Braun, strain C

doi: 10.13145/bacdive5401.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Eubacteriaceae
  • genus: Acetobacterium
  • species: Acetobacterium wieringae
  • full scientific name: Acetobacterium wieringae Braun and Gottschalk 1983

@ref: 924

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Eubacteriaceae

genus: Acetobacterium

species: Acetobacterium wieringae

full scientific name: Acetobacterium wieringae Braun and Gottschalk 1983

strain designation: C

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 68.018

Culture and growth conditions

culture medium

  • @ref: 924
  • name: ACETOBACTERIUM MEDIUM (DSMZ Medium 135)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/135
  • composition: Name: ACETOBACTERIUM MEDIUM (DSMZ Medium 135) Composition: NaHCO3 9.79432 g/l D-Fructose 9.79432 g/l Yeast extract 1.95886 g/l NH4Cl 0.979432 g/l Na2S x 9 H2O 0.489716 g/l L-Cysteine HCl x H2O 0.489716 g/l K2HPO4 0.440744 g/l KH2PO4 0.323213 g/l MgSO4 x 7 H2O 0.0587659 g/l Nitrilotriacetic acid 0.029383 g/l NaCl 0.0195886 g/l MnSO4 x H2O 0.00979432 g/l ZnSO4 x 7 H2O 0.00352595 g/l CoSO4 x 7 H2O 0.00352595 g/l FeSO4 x 7 H2O 0.00195886 g/l CaCl2 x 2 H2O 0.00195886 g/l NiCl2 x 6 H2O 0.000587659 g/l Sodium resazurin 0.000489716 g/l AlK(SO4)2 x 12 H2O 0.000391773 g/l CuSO4 x 5 H2O 0.000195886 g/l H3BO3 0.000195886 g/l Na2MoO4 x 2 H2O 0.000195886 g/l Pyridoxine hydrochloride 9.79432e-05 g/l Calcium D-(+)-pantothenate 4.89716e-05 g/l Nicotinic acid 4.89716e-05 g/l Riboflavin 4.89716e-05 g/l (DL)-alpha-Lipoic acid 4.89716e-05 g/l p-Aminobenzoic acid 4.89716e-05 g/l Thiamine HCl 4.89716e-05 g/l Folic acid 1.95886e-05 g/l Biotin 1.95886e-05 g/l Na2WO4 x 2 H2O 7.83546e-06 g/l Na2SeO3 x 5 H2O 5.87659e-06 g/l Vitamin B12 9.79432e-07 g/l Distilled water

culture temp

  • @ref: 924
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
924anaerobe
69480anaerobe99.999

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 71.563

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 97.865

Isolation, sampling and environmental information

isolation

  • @ref: 924
  • sample type: anaerobic sewage digester
  • geographic location: Göttingen
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Biodegradation#Anaerobic digestor
#Engineered#Waste#Wastewater
#Condition#Anoxic (anaerobic)

taxonmaps

  • @ref: 69479
  • File name: preview.99_3721.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_30;96_1134;97_1330;98_1608;99_3721&stattab=map
  • Last taxonomy: Acetobacterium
  • 16S sequence: X96955
  • Sequence Identity:
  • Total samples: 1926
  • soil counts: 102
  • aquatic counts: 1132
  • animal counts: 647
  • plant counts: 45

Safety information

risk assessment

  • @ref: 924
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 924
  • description: A.wieringae 16S rRNA gene
  • accession: X96955
  • length: 1474
  • database: ena
  • NCBI tax ID: 52694

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acetobacterium wieringae DSM 1911GCA_001766835contigncbi52694
66792Acetobacterium wieringae strain DSM 191152694.3wgspatric52694
66792Acetobacterium wieringae C2690315663draftimg52694

GC content

  • @ref: 924
  • GC-content: 43.0

External links

@ref: 924

culture collection no.: DSM 1911, ATCC 43740, JCM 2380

straininfo link

@refpassport
20218http://www.straininfo.net/strains/668
20218http://www.straininfo.net/strains/666
20218http://www.straininfo.net/strains/669

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Genetics28007862Genome Sequence of the Acetogenic Bacterium Acetobacterium wieringae DSM 1911T.Poehlein A, Bengelsdorf FR, Schiel-Bengelsdorf B, Daniel R, Durre PGenome Announc10.1128/genomeA.01430-162016
Phylogeny32082285Enrichment of Anaerobic Syngas-Converting Communities and Isolation of a Novel Carboxydotrophic Acetobacterium wieringae Strain JM.Arantes AL, Moreira JPC, Diender M, Parshina SN, Stams AJM, Alves MM, Alves JI, Sousa DZFront Microbiol10.3389/fmicb.2020.000582020
Metabolism33990298Propionate Production from Carbon Monoxide by Synthetic Cocultures of Acetobacterium wieringae and Propionigenic Bacteria.Moreira JPC, Diender M, Arantes AL, Boeren S, Stams AJM, Alves MM, Alves JI, Sousa DZAppl Environ Microbiol10.1128/AEM.02839-202021Acetobacterium/drug effects/*metabolism, Bacterial Proteins/genetics/metabolism, Carbon Monoxide/*metabolism, Coculture Techniques, Deltaproteobacteria/drug effects/*metabolism, Fermentation, Propionates/*metabolism, Proteome/metabolism, Sodium Acetate/pharmacologyPathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
924Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1911)https://www.dsmz.de/collection/catalogue/details/culture/DSM-1911
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)