Strain identifier

BacDive ID: 5401

Type strain: Yes

Species: Acetobacterium wieringae

Strain Designation: C

Strain history: <- M. Braun, Universität Göttingen, Germany; C <- M. Braun; {1978}

NCBI tax ID(s): 52694 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 924

BacDive-ID: 5401

DSM-Number: 1911

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic

description: Acetobacterium wieringae C is an anaerobe, mesophilic bacterium that was isolated from anaerobic sewage digester.

NCBI tax id

  • NCBI tax id: 52694
  • Matching level: species

strain history

  • @ref: 924
  • history: <- M. Braun, Universität Göttingen, Germany; C <- M. Braun; {1978}

doi: 10.13145/bacdive5401.20241212.9.2

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Eubacteriaceae
  • genus: Acetobacterium
  • species: Acetobacterium wieringae
  • full scientific name: Acetobacterium wieringae Braun and Gottschalk 1983

@ref: 924

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Eubacteriaceae

genus: Acetobacterium

species: Acetobacterium wieringae

full scientific name: Acetobacterium wieringae Braun and Gottschalk 1983

strain designation: C

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 924
  • name: ACETOBACTERIUM MEDIUM (DSMZ Medium 135)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/135
  • composition: Name: ACETOBACTERIUM MEDIUM (DSMZ Medium 135) Composition: NaHCO3 9.79432 g/l D-Fructose 9.79432 g/l Yeast extract 1.95886 g/l NH4Cl 0.979432 g/l Na2S x 9 H2O 0.489716 g/l L-Cysteine HCl x H2O 0.489716 g/l K2HPO4 0.440744 g/l KH2PO4 0.323213 g/l MgSO4 x 7 H2O 0.0587659 g/l Nitrilotriacetic acid 0.029383 g/l NaCl 0.0195886 g/l MnSO4 x H2O 0.00979432 g/l ZnSO4 x 7 H2O 0.00352595 g/l CoSO4 x 7 H2O 0.00352595 g/l FeSO4 x 7 H2O 0.00195886 g/l CaCl2 x 2 H2O 0.00195886 g/l NiCl2 x 6 H2O 0.000587659 g/l Sodium resazurin 0.000489716 g/l AlK(SO4)2 x 12 H2O 0.000391773 g/l CuSO4 x 5 H2O 0.000195886 g/l H3BO3 0.000195886 g/l Na2MoO4 x 2 H2O 0.000195886 g/l Pyridoxine hydrochloride 9.79432e-05 g/l Calcium D-(+)-pantothenate 4.89716e-05 g/l Nicotinic acid 4.89716e-05 g/l Riboflavin 4.89716e-05 g/l (DL)-alpha-Lipoic acid 4.89716e-05 g/l p-Aminobenzoic acid 4.89716e-05 g/l Thiamine HCl 4.89716e-05 g/l Folic acid 1.95886e-05 g/l Biotin 1.95886e-05 g/l Na2WO4 x 2 H2O 7.83546e-06 g/l Na2SeO3 x 5 H2O 5.87659e-06 g/l Vitamin B12 9.79432e-07 g/l Distilled water

culture temp

  • @ref: 924
  • growth: positive
  • type: growth
  • temperature: 30

Physiology and metabolism

oxygen tolerance

  • @ref: 924
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 924
  • sample type: anaerobic sewage digester
  • geographic location: Göttingen
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Biodegradation#Anaerobic digestor
#Engineered#Waste#Wastewater
#Condition#Anoxic (anaerobic)

taxonmaps

  • @ref: 69479
  • File name: preview.99_3721.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_30;96_1134;97_1330;98_1608;99_3721&stattab=map
  • Last taxonomy: Acetobacterium
  • 16S sequence: X96955
  • Sequence Identity:
  • Total samples: 1926
  • soil counts: 102
  • aquatic counts: 1132
  • animal counts: 647
  • plant counts: 45

Safety information

risk assessment

  • @ref: 924
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 924
  • description: A.wieringae 16S rRNA gene
  • accession: X96955
  • length: 1474
  • database: nuccore
  • NCBI tax ID: 52694

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acetobacterium wieringae DSM 1911GCA_001766835contigncbi52694
66792Acetobacterium wieringae strain DSM 191152694.3wgspatric52694
66792Acetobacterium wieringae C2690315663draftimg52694

GC content

  • @ref: 924
  • GC-content: 43.0

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69480gram-positivegram-positivePositive reaction to Gram-stainingyes60.282no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)yes78.162no
69480spore-formingspore-formingAbility to form endo- or exosporesyes50.748no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no92.385yes
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno87.108yes
69480flagellatedmotile2+Ability to perform flagellated movementyes69.531no

External links

@ref: 924

culture collection no.: DSM 1911, ATCC 43740, JCM 2380

straininfo link

  • @ref: 74891
  • straininfo: 71

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Genetics28007862Genome Sequence of the Acetogenic Bacterium Acetobacterium wieringae DSM 1911T.Poehlein A, Bengelsdorf FR, Schiel-Bengelsdorf B, Daniel R, Durre PGenome Announc10.1128/genomeA.01430-162016
Phylogeny32082285Enrichment of Anaerobic Syngas-Converting Communities and Isolation of a Novel Carboxydotrophic Acetobacterium wieringae Strain JM.Arantes AL, Moreira JPC, Diender M, Parshina SN, Stams AJM, Alves MM, Alves JI, Sousa DZFront Microbiol10.3389/fmicb.2020.000582020
Metabolism33990298Propionate Production from Carbon Monoxide by Synthetic Cocultures of Acetobacterium wieringae and Propionigenic Bacteria.Moreira JPC, Diender M, Arantes AL, Boeren S, Stams AJM, Alves MM, Alves JI, Sousa DZAppl Environ Microbiol10.1128/AEM.02839-202021Acetobacterium/drug effects/*metabolism, Bacterial Proteins/genetics/metabolism, Carbon Monoxide/*metabolism, Coculture Techniques, Deltaproteobacteria/drug effects/*metabolism, Fermentation, Propionates/*metabolism, Proteome/metabolism, Sodium Acetate/pharmacologyPathogenicity

Reference

@idauthorscataloguedoi/urltitle
924Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1911)https://www.dsmz.de/collection/catalogue/details/culture/DSM-1911
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
74891Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID71.1StrainInfo: A central database for resolving microbial strain identifiers