Strain identifier
BacDive ID: 5401
Type strain: 
Species: Acetobacterium wieringae
Strain Designation: C
Strain history: <- M. Braun, strain C
NCBI tax ID(s): 52694 (species)
version 8.1 (current version)
General
@ref: 924
BacDive-ID: 5401
DSM-Number: 1911
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic
description: Acetobacterium wieringae C is an anaerobe, mesophilic bacterium that was isolated from anaerobic sewage digester.
NCBI tax id
- NCBI tax id: 52694
- Matching level: species
strain history
- @ref: 924
- history: <- M. Braun, strain C
doi: 10.13145/bacdive5401.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Eubacteriaceae
- genus: Acetobacterium
- species: Acetobacterium wieringae
- full scientific name: Acetobacterium wieringae Braun and Gottschalk 1983
@ref: 924
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Eubacteriaceae
genus: Acetobacterium
species: Acetobacterium wieringae
full scientific name: Acetobacterium wieringae Braun and Gottschalk 1983
strain designation: C
type strain: yes
Culture and growth conditions
culture medium
- @ref: 924
- name: ACETOBACTERIUM MEDIUM (DSMZ Medium 135)
- growth: yes
- link: https://mediadive.dsmz.de/medium/135
- composition: Name: ACETOBACTERIUM MEDIUM (DSMZ Medium 135) Composition: NaHCO3 9.79432 g/l D-Fructose 9.79432 g/l Yeast extract 1.95886 g/l NH4Cl 0.979432 g/l Na2S x 9 H2O 0.489716 g/l L-Cysteine HCl x H2O 0.489716 g/l K2HPO4 0.440744 g/l KH2PO4 0.323213 g/l MgSO4 x 7 H2O 0.0587659 g/l Nitrilotriacetic acid 0.029383 g/l NaCl 0.0195886 g/l MnSO4 x H2O 0.00979432 g/l ZnSO4 x 7 H2O 0.00352595 g/l CoSO4 x 7 H2O 0.00352595 g/l FeSO4 x 7 H2O 0.00195886 g/l CaCl2 x 2 H2O 0.00195886 g/l NiCl2 x 6 H2O 0.000587659 g/l Sodium resazurin 0.000489716 g/l AlK(SO4)2 x 12 H2O 0.000391773 g/l CuSO4 x 5 H2O 0.000195886 g/l H3BO3 0.000195886 g/l Na2MoO4 x 2 H2O 0.000195886 g/l Pyridoxine hydrochloride 9.79432e-05 g/l Calcium D-(+)-pantothenate 4.89716e-05 g/l Nicotinic acid 4.89716e-05 g/l Riboflavin 4.89716e-05 g/l (DL)-alpha-Lipoic acid 4.89716e-05 g/l p-Aminobenzoic acid 4.89716e-05 g/l Thiamine HCl 4.89716e-05 g/l Folic acid 1.95886e-05 g/l Biotin 1.95886e-05 g/l Na2WO4 x 2 H2O 7.83546e-06 g/l Na2SeO3 x 5 H2O 5.87659e-06 g/l Vitamin B12 9.79432e-07 g/l Distilled water
culture temp
- @ref: 924
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 924
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 924
- sample type: anaerobic sewage digester
- geographic location: Göttingen
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Biodegradation | #Anaerobic digestor |
| #Engineered | #Waste | #Wastewater |
| #Condition | #Anoxic (anaerobic) |
taxonmaps
- @ref: 69479
- File name: preview.99_3721.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_30;96_1134;97_1330;98_1608;99_3721&stattab=map
- Last taxonomy: Acetobacterium
- 16S sequence: X96955
- Sequence Identity:
- Total samples: 1926
- soil counts: 102
- aquatic counts: 1132
- animal counts: 647
- plant counts: 45
Safety information
risk assessment
- @ref: 924
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 924
- description: A.wieringae 16S rRNA gene
- accession: X96955
- length: 1474
- database: ena
- NCBI tax ID: 52694
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Acetobacterium wieringae DSM 1911 | GCA_001766835 | contig | ncbi | 52694 |
| 66792 | Acetobacterium wieringae strain DSM 1911 | 52694.3 | wgs | patric | 52694 |
| 66792 | Acetobacterium wieringae C | 2690315663 | draft | img | 52694 |
GC content
- @ref: 924
- GC-content: 43.0
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| gram-positive | yes | 64.735 | no |
| anaerobic | yes | 98.763 | no |
| halophile | no | 89.501 | no |
| spore-forming | no | 54.874 | no |
| glucose-util | yes | 74.466 | no |
| thermophile | no | 99.338 | yes |
| motile | yes | 77.281 | no |
| aerobic | no | 97.443 | no |
| flagellated | no | 54.191 | no |
| glucose-ferment | yes | 57.657 | no |
External links
@ref: 924
culture collection no.: DSM 1911, ATCC 43740, JCM 2380
straininfo link
- @ref: 74891
- straininfo: 71
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Genetics | 28007862 | Genome Sequence of the Acetogenic Bacterium Acetobacterium wieringae DSM 1911T. | Poehlein A, Bengelsdorf FR, Schiel-Bengelsdorf B, Daniel R, Durre P | Genome Announc | 10.1128/genomeA.01430-16 | 2016 | ||
| Phylogeny | 32082285 | Enrichment of Anaerobic Syngas-Converting Communities and Isolation of a Novel Carboxydotrophic Acetobacterium wieringae Strain JM. | Arantes AL, Moreira JPC, Diender M, Parshina SN, Stams AJM, Alves MM, Alves JI, Sousa DZ | Front Microbiol | 10.3389/fmicb.2020.00058 | 2020 | ||
| Metabolism | 33990298 | Propionate Production from Carbon Monoxide by Synthetic Cocultures of Acetobacterium wieringae and Propionigenic Bacteria. | Moreira JPC, Diender M, Arantes AL, Boeren S, Stams AJM, Alves MM, Alves JI, Sousa DZ | Appl Environ Microbiol | 10.1128/AEM.02839-20 | 2021 | Acetobacterium/drug effects/*metabolism, Bacterial Proteins/genetics/metabolism, Carbon Monoxide/*metabolism, Coculture Techniques, Deltaproteobacteria/drug effects/*metabolism, Fermentation, Propionates/*metabolism, Proteome/metabolism, Sodium Acetate/pharmacology | Pathogenicity |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 924 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 1911) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-1911 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 74891 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID71.1 | StrainInfo: A central database for resolving microbial strain identifiers |