Strain identifier
BacDive ID: 5399
Type strain:
Species: Acetobacterium carbinolicum
Strain history: <- B. Eichler and B. Schink, WoProp1
NCBI tax ID(s): 52690 (species)
General
@ref: 1251
BacDive-ID: 5399
DSM-Number: 2925
keywords: 16S sequence, Bacteria, anaerobe, mesophilic
description: Acetobacterium carbinolicum DSM 2925 is an anaerobe, mesophilic bacterium that was isolated from freshwater mud.
NCBI tax id
- NCBI tax id: 52690
- Matching level: species
strain history
- @ref: 1251
- history: <- B. Eichler and B. Schink, WoProp1
doi: 10.13145/bacdive5399.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Eubacteriaceae
- genus: Acetobacterium
- species: Acetobacterium carbinolicum
- full scientific name: Acetobacterium carbinolicum Eichler and Schink 1985
@ref: 1251
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Eubacteriaceae
genus: Acetobacterium
species: Acetobacterium carbinolicum
full scientific name: Acetobacterium carbinolicum Eichler and Schink 1985 emend. Paarup et al. 2006
type strain: yes
Culture and growth conditions
culture medium
- @ref: 1251
- name: DESULFOFARCIMEN MEDIUM (DSMZ Medium 124)
- growth: yes
- link: https://mediadive.dsmz.de/medium/124
- composition: Name: DESULFOFARCIMEN MEDIUM (DSMZ Medium 124; with strain-specific modifications) Composition: NaHCO3 4.48654 g/l Na2SO4 2.83151 g/l NaCl 1.1665 g/l Ethanol absolute 0.997009 g/l Yeast extract 0.997009 g/l Na2S x 9 H2O 0.398804 g/l MgCl2 x 6 H2O 0.398804 g/l KCl 0.299103 g/l NH4Cl 0.269192 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149551 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498504 g/l NaOH 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water
culture temp
- @ref: 1251
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 1251
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
- @ref: 1251
- sample type: freshwater mud
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Freshwater |
#Environmental | #Terrestrial | #Mud (Sludge) |
taxonmaps
- @ref: 69479
- File name: preview.99_29260.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_30;96_1134;97_1330;98_1608;99_29260&stattab=map
- Last taxonomy: Acetobacterium
- 16S sequence: X96956
- Sequence Identity:
- Total samples: 29
- soil counts: 8
- aquatic counts: 21
Safety information
risk assessment
- @ref: 1251
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 1251
- description: A.carbinolicum 16S rRNA gene
- accession: X96956
- length: 1469
- database: ena
- NCBI tax ID: 52690
GC content
- @ref: 1251
- GC-content: 38.5
External links
@ref: 1251
culture collection no.: DSM 2925, WoProp 1
straininfo link
- @ref: 74889
- straininfo: 47673
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
1251 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2925) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-2925 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
74889 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47673.1 | StrainInfo: A central database for resolving microbial strain identifiers |