Strain identifier

BacDive ID: 5399

Type strain: Yes

Species: Acetobacterium carbinolicum

Strain history: <- B. Eichler and B. Schink, WoProp1

NCBI tax ID(s): 52690 (species)

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General

@ref: 1251

BacDive-ID: 5399

DSM-Number: 2925

keywords: 16S sequence, Bacteria, anaerobe, mesophilic

description: Acetobacterium carbinolicum DSM 2925 is an anaerobe, mesophilic bacterium that was isolated from freshwater mud.

NCBI tax id

  • NCBI tax id: 52690
  • Matching level: species

strain history

  • @ref: 1251
  • history: <- B. Eichler and B. Schink, WoProp1

doi: 10.13145/bacdive5399.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Eubacteriaceae
  • genus: Acetobacterium
  • species: Acetobacterium carbinolicum
  • full scientific name: Acetobacterium carbinolicum Eichler and Schink 1985

@ref: 1251

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Eubacteriaceae

genus: Acetobacterium

species: Acetobacterium carbinolicum

full scientific name: Acetobacterium carbinolicum Eichler and Schink 1985 emend. Paarup et al. 2006

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 1251
  • name: DESULFOFARCIMEN MEDIUM (DSMZ Medium 124)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/124
  • composition: Name: DESULFOFARCIMEN MEDIUM (DSMZ Medium 124; with strain-specific modifications) Composition: NaHCO3 4.48654 g/l Na2SO4 2.83151 g/l NaCl 1.1665 g/l Ethanol absolute 0.997009 g/l Yeast extract 0.997009 g/l Na2S x 9 H2O 0.398804 g/l MgCl2 x 6 H2O 0.398804 g/l KCl 0.299103 g/l NH4Cl 0.269192 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149551 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498504 g/l NaOH 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

culture temp

  • @ref: 1251
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 1251
  • oxygen tolerance: anaerobe

Isolation, sampling and environmental information

isolation

  • @ref: 1251
  • sample type: freshwater mud
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Freshwater
#Environmental#Terrestrial#Mud (Sludge)

taxonmaps

  • @ref: 69479
  • File name: preview.99_29260.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_30;96_1134;97_1330;98_1608;99_29260&stattab=map
  • Last taxonomy: Acetobacterium
  • 16S sequence: X96956
  • Sequence Identity:
  • Total samples: 29
  • soil counts: 8
  • aquatic counts: 21

Safety information

risk assessment

  • @ref: 1251
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 1251
  • description: A.carbinolicum 16S rRNA gene
  • accession: X96956
  • length: 1469
  • database: ena
  • NCBI tax ID: 52690

GC content

  • @ref: 1251
  • GC-content: 38.5

External links

@ref: 1251

culture collection no.: DSM 2925, WoProp 1

straininfo link

  • @ref: 74889
  • straininfo: 47673

Reference

@idauthorscataloguedoi/urltitle
1251Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2925)https://www.dsmz.de/collection/catalogue/details/culture/DSM-2925
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
74889Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID47673.1StrainInfo: A central database for resolving microbial strain identifiers