Strain identifier
BacDive ID: 5397
Type strain: 
Species: Altericroceibacterium indicum
Strain Designation: MSSRF26
Strain history: <- S. Nair, MSSRF; MSSRF26 <- N. Ramesh kumar
NCBI tax ID(s): 374177 (species)
version 8.1 (current version)
General
@ref: 7618
BacDive-ID: 5397
DSM-Number: 18604
keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-negative, rod-shaped
description: Altericroceibacterium indicum MSSRF26 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from rhizosphere of mangrove-associated wild rice Porteresia coarctata Tateoka.
NCBI tax id
- NCBI tax id: 374177
- Matching level: species
strain history
- @ref: 7618
- history: <- S. Nair, MSSRF; MSSRF26 <- N. Ramesh kumar
doi: 10.13145/bacdive5397.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Sphingomonadales
- family: Erythrobacteraceae
- genus: Altericroceibacterium
- species: Altericroceibacterium indicum
- full scientific name: Altericroceibacterium indicum (Ramesh Kumar et al. 2008) Xu et al. 2020
synonyms
- @ref: 20215
- synonym: Altererythrobacter indicus
@ref: 7618
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Sphingomonadales
family: Erythrobacteraceae
genus: Altererythrobacter
species: Altererythrobacter indicus
full scientific name: Altererythrobacter indicus Ramesh Kumar et al. 2008
strain designation: MSSRF26
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell shape | motility | confidence |
|---|---|---|---|---|
| 32458 | negative | rod-shaped | no | |
| 69480 | negative | 99.985 |
pigmentation
- @ref: 32458
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 32458 | positive | growth | 04-42 | |
| 32458 | positive | optimum | 27.5 | mesophilic |
culture pH
- @ref: 32458
- ability: positive
- type: optimum
- pH: 7
Physiology and metabolism
oxygen tolerance
- @ref: 32458
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.993 |
halophily
- @ref: 32458
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-12 %
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 32458 | 16449 | alanine | + | carbon source |
| 32458 | 22599 | arabinose | + | carbon source |
| 32458 | 17234 | glucose | + | carbon source |
| 32458 | 17306 | maltose | + | carbon source |
| 32458 | 26271 | proline | + | carbon source |
| 32458 | 17992 | sucrose | + | carbon source |
enzymes
- @ref: 32458
- value: catalase
- activity: +
- ec: 1.11.1.6
Isolation, sampling and environmental information
isolation
- @ref: 7618
- sample type: rhizosphere of mangrove-associated wild rice Porteresia coarctata Tateoka
- host species: Porteresia coarctata
- geographic location: Tamil Nadu, Pichavaram
- country: India
- origin.country: IND
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Mangrove |
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Rhizosphere |
taxonmaps
- @ref: 69479
- File name: preview.99_50995.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_20;96_1655;97_28732;98_36627;99_50995&stattab=map
- Last taxonomy: Erythrobacteraceae
- 16S sequence: DQ399262
- Sequence Identity:
- Total samples: 140
- soil counts: 24
- aquatic counts: 102
- animal counts: 11
- plant counts: 3
Safety information
risk assessment
- @ref: 7618
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7618
- description: Altererythrobacter indicus strain MSSRF26 16S ribosomal RNA gene, partial sequence
- accession: DQ399262
- length: 1338
- database: ena
- NCBI tax ID: 374177
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Altericroceibacterium indicum DSM 18604 | GCA_009828105 | contig | ncbi | 374177 |
| 66792 | Altererythrobacter indicus strain DSM 18604 | 374177.5 | wgs | patric | 374177 |
GC content
- @ref: 7618
- GC-content: 66.8
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| gram-positive | no | 97.782 | yes |
| anaerobic | no | 99.388 | no |
| halophile | no | 81.401 | no |
| spore-forming | no | 96.473 | no |
| glucose-util | yes | 87.805 | no |
| aerobic | yes | 89.255 | yes |
| motile | no | 93.469 | no |
| flagellated | no | 98.144 | yes |
| thermophile | no | 99.124 | yes |
| glucose-ferment | no | 88.035 | no |
External links
@ref: 7618
culture collection no.: DSM 18604, LMG 23789
straininfo link
- @ref: 74887
- straininfo: 343783
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 7618 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18604) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18604 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 32458 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 28680 | 28776041 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 74887 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID343783.1 | StrainInfo: A central database for resolving microbial strain identifiers |