Strain identifier

BacDive ID: 5391

Type strain: Yes

Species: Erythrobacter sanguineus

Strain Designation: A91

Strain history: CIP <- 2003, IAM <- ATCC <- R. Ahrens: strain A91

NCBI tax ID(s): 198312 (species)

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General

@ref: 4165

BacDive-ID: 5391

DSM-Number: 11032

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, Gram-negative

description: Erythrobacter sanguineus A91 is an obligate aerobe, Gram-negative bacterium that was isolated from brackish water.

NCBI tax id

  • NCBI tax id: 198312
  • Matching level: species

strain history

@refhistory
4165<- ATCC <- R. Ahrens; A91
67770IAM 12620 <-- ATCC 25659 <-- R. Ahrens A91.
122421CIP <- 2003, IAM <- ATCC <- R. Ahrens: strain A91

doi: 10.13145/bacdive5391.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Sphingomonadales
  • family: Erythrobacteraceae
  • genus: Erythrobacter
  • species: Erythrobacter sanguineus
  • full scientific name: Erythrobacter sanguineus (Hiraishi et al. 2002 ex Ahrens and Rheinheimer 1967) Xu et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Porphyrobacter sanguineus

@ref: 4165

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Sphingomonadales

family: Erythrobacteraceae

genus: Porphyrobacter

species: Porphyrobacter sanguineus

full scientific name: Porphyrobacter sanguineus (ex Ahrens and Rheinheimer 1968) Hiraishi et al. 2002

strain designation: A91

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
122421negativeoval-shapedyes
69480negative96.838

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
4165BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
37137Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
122421CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperature
4165positivegrowth25
37137positivegrowth25
67770positivegrowth25
122421positivegrowth15-37
122421nogrowth5
122421nogrowth41

Physiology and metabolism

oxygen tolerance

  • @ref: 122421
  • oxygen tolerance: obligate aerobe

spore formation

@refspore formationconfidence
69480no93.844
69481no100

halophily

@refsaltgrowthtested relationconcentration
122421NaClpositivegrowth0 %
122421NaClnogrowth2 %
122421NaClnogrowth4 %
122421NaClnogrowth6 %
122421NaClnogrowth8 %
122421NaClnogrowth10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12242116947citrate-carbon source
1224214853esculin+hydrolysis
12242117632nitrate-reduction
12242116301nitrite-reduction
12242117234glucose-degradation

metabolite production

  • @ref: 122421
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
12242115688acetoin-
12242117234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin+3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
122421oxidase+
122421beta-galactosidase+3.2.1.23
122421alcohol dehydrogenase-1.1.1.1
122421gelatinase-
122421amylase-
122421caseinase-3.4.21.50
122421catalase+1.11.1.6
122421tween esterase-
122421gamma-glutamyltransferase+2.3.2.2
122421lecithinase-
122421lipase-
122421lysine decarboxylase-4.1.1.18
122421ornithine decarboxylase-4.1.1.17
122421phenylalanine ammonia-lyase-4.3.1.24
122421protease-
122421tryptophan deaminase-
122421urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122421-+++-+--++++-+------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryisolation date
4165brackish waterBaltic Sea
67770Brackish waterBaltic Sea
122421Environment, Brackish waterBaltic Sea1967

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Brackish

taxonmaps

  • @ref: 69479
  • File name: preview.99_7699.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_20;96_251;97_1392;98_1691;99_7699&stattab=map
  • Last taxonomy: Erythrobacter sanguineus
  • 16S sequence: AB021493
  • Sequence Identity:
  • Total samples: 2494
  • soil counts: 329
  • aquatic counts: 1918
  • animal counts: 210
  • plant counts: 37

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
41651Risk group (German classification)
1224211Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Porphyrobacter sanguineus gene for 16S rRNA, partial sequence, strain: NBRC 15763AB6809611412nuccore198312
4165Porphyrobacter sanguineus DNA for 16S rRNA, strain IAM 12620AB0214931479nuccore198312

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Porphyrobacter sanguineus strain DSM 11032198312.3wgspatric198312
66792Porphyrobacter sanguineus strain JCM 20691198312.6wgspatric198312
66792Porphyrobacter sanguineus JCM 206912848682527draftimg198312
66792Porphyrobacter sanguineus DSM 110322582580729draftimg198312
67770Erythrobacter sanguineus DSM 11032GCA_900143235contigncbi198312
67770Erythrobacter sanguineus JCM 20691GCA_002155655scaffoldncbi198312

GC content

  • @ref: 67770
  • GC-content: 63.6
  • method: genome sequence analysis

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesno100no
69480gram-positivegram-positivePositive reaction to Gram-stainingno96.838no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no94.809no
69480spore-formingspore-formingAbility to form endo- or exosporesno93.844no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)yes89.304yes
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno94.319yes
69480flagellatedmotile2+Ability to perform flagellated movementyes59.992no

External links

@ref: 4165

culture collection no.: DSM 11032, ATCC 25659, IAM 12620, ICPB 4167, IFO 15763, NBRC 15763, JCM 20691, LMG 160, NCIMB 1539, CIP 107821

straininfo link

  • @ref: 74881
  • straininfo: 450

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
4165Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11032)https://www.dsmz.de/collection/catalogue/details/culture/DSM-11032
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
37137Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/5375
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
74881Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID450.1StrainInfo: A central database for resolving microbial strain identifiers
122421Curators of the CIPCollection of Institut Pasteur (CIP 107821)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107821