Strain identifier

BacDive ID: 5383

Type strain: Yes

Species: Qipengyuania gaetbuli

Strain Designation: SW-161

Strain history: <- J.H. Yoon

NCBI tax ID(s): 266952 (species)

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General

@ref: 6340

BacDive-ID: 5383

DSM-Number: 16225

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative

description: Qipengyuania gaetbuli SW-161 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from sea water of tidal flat.

NCBI tax id

  • NCBI tax id: 266952
  • Matching level: species

strain history

@refhistory
6340<- J.-H. Yoon; SW-161
67771<- J.H. Yoon

doi: 10.13145/bacdive5383.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Sphingomonadales
  • family: Erythrobacteraceae
  • genus: Qipengyuania
  • species: Qipengyuania gaetbuli
  • full scientific name: Qipengyuania gaetbuli (Yoon et al. 2005) Xu et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Erythrobacter gaetbuli

@ref: 6340

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Sphingomonadales

family: Erythrobacteraceae

genus: Erythrobacter

species: Erythrobacter gaetbuli

full scientific name: Erythrobacter gaetbuli Yoon et al. 2005

strain designation: SW-161

type strain: yes

Morphology

cell morphology

  • @ref: 67771
  • gram stain: negative

Culture and growth conditions

culture medium

  • @ref: 6340
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
6340positivegrowth30mesophilic
67771positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: aerobe

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
6340sea water of tidal flatDaepo beachRepublic of KoreaKORAsia
67771From seawaterthe west seaRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Terrestrial#Tidal flat

taxonmaps

  • @ref: 69479
  • File name: preview.99_49515.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_20;96_251;97_274;98_25008;99_49515&stattab=map
  • Last taxonomy: Qipengyuania gaetbuli
  • 16S sequence: AY562220
  • Sequence Identity:
  • Total samples: 101
  • soil counts: 3
  • aquatic counts: 72
  • animal counts: 22
  • plant counts: 4

Safety information

risk assessment

  • @ref: 6340
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 6340
  • description: Erythrobacter gaetbuli 16S ribosomal RNA gene, partial sequence
  • accession: AY562220
  • length: 1441
  • database: ena
  • NCBI tax ID: 266952

GC content

  • @ref: 6340
  • GC-content: 64.5
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 6340

culture collection no.: DSM 16225, KCTC 12227

straininfo link

  • @ref: 74873
  • straininfo: 135109

literature

  • topic: Phylogeny
  • Pubmed-ID: 33661468
  • title: Altererythrobacter flava sp. nov., a new member of the family Erythrobacteraceae, isolated from a surface seawater sample.
  • authors: Zhang XM, Zhang DF, Zhang YL
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-021-01531-9
  • year: 2021
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids, *Phospholipids, Phylogeny, RNA, Ribosomal, 16S/genetics, *Seawater, Sequence Analysis, DNA
  • topic2: Transcriptome

Reference

@idauthorscataloguedoi/urltitle
6340Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16225)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16225
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
74873Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID135109.1StrainInfo: A central database for resolving microbial strain identifiers