Strain identifier
BacDive ID: 5367
Type strain:
Species: Erysipelothrix rhusiopathiae
Strain history: CIP <- 1999, CCUG <- NCTC <- L.P. Garrod, London: strain a-P15, Erysipelothrix insidiosa
NCBI tax ID(s): 525280 (strain), 1648 (species)
General
@ref: 1916
BacDive-ID: 5367
DSM-Number: 5055
keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic
description: Erysipelothrix rhusiopathiae DSM 5055 is a facultative anaerobe, mesophilic bacterium that was isolated from spleen of pig with endocarditis.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1648 | species |
525280 | strain |
strain history
@ref | history |
---|---|
1916 | <- G. Eifert, TH Darmstadt, Germany; <- NCTC; NCTC 8163 <- L.P. Garrod; |
122232 | CIP <- 1999, CCUG <- NCTC <- L.P. Garrod, London: strain a-P15, Erysipelothrix insidiosa |
doi: 10.13145/bacdive5367.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Erysipelotrichia
- order: Erysipelotrichales
- family: Erysipelotrichaceae
- genus: Erysipelothrix
- species: Erysipelothrix rhusiopathiae
- full scientific name: Erysipelothrix rhusiopathiae (Migula 1900) Buchanan 1918 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacterium rhusiopathiae
@ref: 1916
domain: Bacteria
phylum: Firmicutes
class: Erysipelotrichia
order: Erysipelotrichales
family: Erysipelotrichaceae
genus: Erysipelothrix
species: Erysipelothrix rhusiopathiae
full scientific name: Erysipelothrix rhusiopathiae (Migula 1900) Buchanan 1918
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | no | 96.128 | ||
69480 | 100 | positive | ||
122232 | no | positive | rod-shaped |
colony morphology
@ref | type of hemolysis | hemolysis ability | incubation period |
---|---|---|---|
1916 | alpha | 1 | 1-2 days |
122232 |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
1916 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
41686 | MEDIUM 4 - Columbia agar with 20 % sterile defibrinated horse serum | yes | Horse serum (200.000 ml);Columbia agar (39.000 g);Distilled water make up to (1000.000 ml) | |
122232 | CIP Medium 6 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6 | |
122232 | CIP Medium 4 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=4 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
1916 | positive | growth | 37 | mesophilic |
41686 | positive | growth | 37 | mesophilic |
122232 | positive | growth | 22-41 | |
122232 | no | growth | 5 | psychrophilic |
122232 | no | growth | 10 | psychrophilic |
122232 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 122232
- oxygen tolerance: facultative anaerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.995 |
murein
- @ref: 1916
- murein short key: B15
- type: B1delta {L-Ser} [L-Ala] D-Glu-Gly-L-Lys-L-Lys
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68369 | 25115 | malate | - | assimilation |
68369 | 17128 | adipate | - | assimilation |
68369 | 27689 | decanoate | - | assimilation |
68369 | 24265 | gluconate | - | assimilation |
68369 | 17306 | maltose | - | assimilation |
68369 | 59640 | N-acetylglucosamine | - | assimilation |
68369 | 16899 | D-mannitol | - | assimilation |
68369 | 16024 | D-mannose | - | assimilation |
68369 | 30849 | L-arabinose | - | assimilation |
68369 | 17634 | D-glucose | - | assimilation |
68369 | 5291 | gelatin | - | hydrolysis |
68369 | 4853 | esculin | - | hydrolysis |
68369 | 16199 | urea | - | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 17634 | D-glucose | - | fermentation |
68369 | 27897 | tryptophan | - | energy source |
68369 | 17632 | nitrate | - | reduction |
68368 | 30849 | L-arabinose | - | fermentation |
68368 | 27613 | amygdalin | - | fermentation |
68368 | 28053 | melibiose | - | fermentation |
68368 | 17992 | sucrose | - | fermentation |
68368 | 62345 | L-rhamnose | - | fermentation |
68368 | 30911 | sorbitol | - | fermentation |
68368 | 17268 | myo-inositol | - | fermentation |
68368 | 16899 | D-mannitol | - | fermentation |
68368 | 17634 | D-glucose | - | fermentation |
68368 | 5291 | gelatin | - | hydrolysis |
68368 | 27897 | tryptophan | - | energy source |
68368 | 16199 | urea | - | hydrolysis |
68368 | 16947 | citrate | - | assimilation |
68368 | 18257 | ornithine | - | degradation |
68368 | 25094 | lysine | - | degradation |
68368 | 29016 | arginine | - | hydrolysis |
122232 | 4853 | esculin | - | hydrolysis |
122232 | 17234 | glucose | - | fermentation |
122232 | 17716 | lactose | - | fermentation |
122232 | 17632 | nitrate | - | reduction |
122232 | 16301 | nitrite | - | reduction |
122232 | 132112 | sodium thiosulfate | + | builds gas from |
122232 | 17632 | nitrate | + | respiration |
68379 | 17632 | nitrate | - | reduction |
68379 | 4853 | esculin | - | hydrolysis |
68379 | 16199 | urea | - | hydrolysis |
68379 | 5291 | gelatin | - | hydrolysis |
68379 | 16988 | D-ribose | - | fermentation |
68379 | 65327 | D-xylose | - | fermentation |
68379 | 16899 | D-mannitol | - | fermentation |
68379 | 17306 | maltose | - | fermentation |
68379 | 17716 | lactose | - | fermentation |
68379 | 17992 | sucrose | - | fermentation |
68379 | 28087 | glycogen | - | fermentation |
68374 | 18257 | ornithine | - | degradation |
68374 | 29016 | arginine | - | hydrolysis |
68374 | 25094 | lysine | - | degradation |
68374 | 16199 | urea | - | hydrolysis |
68374 | 18403 | L-arabitol | - | builds acid from |
68374 | 18024 | D-galacturonic acid | - | builds acid from |
68374 | Potassium 5-ketogluconate | - | builds acid from | |
68374 | 16899 | D-mannitol | - | builds acid from |
68374 | 17306 | maltose | - | builds acid from |
68374 | 15963 | ribitol | - | builds acid from |
68374 | 18394 | palatinose | - | builds acid from |
68374 | 15792 | malonate | + | assimilation |
68374 | 27897 | tryptophan | - | energy source |
68374 | 17634 | D-glucose | - | builds acid from |
68374 | 17992 | sucrose | - | builds acid from |
68374 | 30849 | L-arabinose | - | builds acid from |
68374 | 18333 | D-arabitol | - | builds acid from |
68374 | 27082 | trehalose | - | builds acid from |
68374 | 62345 | L-rhamnose | - | builds acid from |
68374 | 17268 | myo-inositol | - | builds acid from |
68374 | 17057 | cellobiose | - | builds acid from |
68374 | 30911 | sorbitol | - | builds acid from |
68377 | 17634 | D-glucose | + | builds acid from |
68377 | 17306 | maltose | - | builds acid from |
68377 | 17992 | sucrose | - | builds acid from |
68377 | 18257 | ornithine | - | degradation |
68377 | 27897 | tryptophan | - | energy source |
68380 | 16199 | urea | - | hydrolysis |
68380 | 29016 | arginine | - | hydrolysis |
68380 | 16024 | D-mannose | - | fermentation |
68380 | 16634 | raffinose | - | fermentation |
68380 | 29985 | L-glutamate | - | degradation |
68380 | 17632 | nitrate | - | reduction |
68380 | 27897 | tryptophan | - | energy source |
68381 | 29016 | arginine | + | hydrolysis |
68381 | 16988 | D-ribose | - | builds acid from |
68381 | 16899 | D-mannitol | - | builds acid from |
68381 | 30911 | sorbitol | - | builds acid from |
68381 | 17716 | lactose | + | builds acid from |
68381 | 27082 | trehalose | - | builds acid from |
68381 | 16634 | raffinose | - | builds acid from |
68381 | 17992 | sucrose | - | builds acid from |
68381 | 30849 | L-arabinose | - | builds acid from |
68381 | 18333 | D-arabitol | - | builds acid from |
68381 | 40585 | alpha-cyclodextrin | - | builds acid from |
68381 | 606565 | hippurate | - | hydrolysis |
68381 | 28087 | glycogen | - | builds acid from |
68381 | 27941 | pullulan | - | builds acid from |
68381 | 17306 | maltose | - | builds acid from |
68381 | 28053 | melibiose | - | builds acid from |
68381 | 6731 | melezitose | - | builds acid from |
68381 | 320055 | methyl beta-D-glucopyranoside | - | builds acid from |
68381 | 16443 | D-tagatose | - | builds acid from |
68381 | 16199 | urea | - | hydrolysis |
antibiotic resistance
- @ref: 122232
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68377 | 35581 | indole | no |
68374 | 35581 | indole | no |
68369 | 35581 | indole | no |
68368 | 15688 | acetoin | no |
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | no |
122232 | 35581 | indole | no |
68380 | 35581 | indole | no |
68381 | 15688 | acetoin | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test | methylred-test |
---|---|---|---|---|---|
68381 | 15688 | acetoin | - | ||
68380 | 35581 | indole | - | ||
68377 | 35581 | indole | - | ||
68374 | 35581 | indole | - | ||
68369 | 35581 | indole | - | ||
68368 | 15688 | acetoin | - | ||
68368 | 35581 | indole | - | ||
122232 | 15688 | acetoin | - | ||
122232 | 17234 | glucose | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
1916 | catalase | - | 1.11.1.6 |
1916 | cytochrome-c oxidase | - | 1.9.3.1 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | + | |
68382 | esterase (C 4) | + | |
68381 | urease | - | 3.5.1.5 |
68381 | beta-mannosidase | - | 3.2.1.25 |
68381 | glycyl tryptophan arylamidase | - | |
68381 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68381 | pyrrolidonyl arylamidase | + | 3.4.19.3 |
68381 | beta-galactosidase | - | 3.2.1.23 |
68381 | Alanyl-Phenylalanyl-Proline arylamidase | - | |
68381 | alkaline phosphatase | + | 3.1.3.1 |
68381 | alpha-galactosidase | - | 3.2.1.22 |
68381 | beta-glucuronidase | - | 3.2.1.31 |
68381 | beta-glucosidase | - | 3.2.1.21 |
68381 | arginine dihydrolase | + | 3.5.3.6 |
68380 | serine arylamidase | - | |
68380 | glutamyl-glutamate arylamidase | - | |
68380 | histidine arylamidase | - | |
68380 | glycin arylamidase | - | |
68380 | alanine arylamidase | - | 3.4.11.2 |
68380 | tyrosine arylamidase | + | |
68380 | pyrrolidonyl arylamidase | + | 3.4.19.3 |
68380 | leucine arylamidase | - | 3.4.11.1 |
68380 | phenylalanine arylamidase | + | |
68380 | leucyl glycin arylamidase | - | 3.4.11.1 |
68380 | proline-arylamidase | - | 3.4.11.5 |
68380 | L-arginine arylamidase | + | |
68380 | alkaline phosphatase | + | 3.1.3.1 |
68380 | tryptophan deaminase | - | 4.1.99.1 |
68380 | alpha-fucosidase | - | 3.2.1.51 |
68380 | glutamate decarboxylase | - | 4.1.1.15 |
68380 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68380 | beta-glucuronidase | - | 3.2.1.31 |
68380 | alpha-arabinosidase | - | 3.2.1.55 |
68380 | beta-glucosidase | - | 3.2.1.21 |
68380 | alpha-glucosidase | - | 3.2.1.20 |
68380 | beta-Galactosidase 6-phosphate | - | |
68380 | beta-galactosidase | + | 3.2.1.23 |
68380 | alpha-galactosidase | - | 3.2.1.22 |
68380 | arginine dihydrolase | - | 3.5.3.6 |
68380 | urease | - | 3.5.1.5 |
68377 | tryptophan deaminase | - | 4.1.99.1 |
68377 | proline-arylamidase | - | 3.4.11.5 |
68377 | ornithine decarboxylase | - | 4.1.1.17 |
68374 | alpha-maltosidase | - | |
68374 | alpha-galactosidase | - | 3.2.1.22 |
68374 | alpha-glucosidase | - | 3.2.1.20 |
68374 | beta-galactosidase | + | 3.2.1.23 |
68374 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68374 | beta-glucuronidase | - | 3.2.1.31 |
68374 | beta-glucosidase | - | 3.2.1.21 |
68374 | lipase | + | |
68374 | urease | - | 3.5.1.5 |
68374 | lysine decarboxylase | - | 4.1.1.18 |
68374 | arginine dihydrolase | - | 3.5.3.6 |
68374 | ornithine decarboxylase | - | 4.1.1.17 |
68379 | catalase | - | 1.11.1.6 |
68379 | gelatinase | - | |
68379 | urease | - | 3.5.1.5 |
68379 | beta-glucosidase | - | 3.2.1.21 |
68379 | alpha-glucosidase | - | 3.2.1.20 |
68379 | beta-galactosidase | - | 3.2.1.23 |
68379 | beta-glucuronidase | - | 3.2.1.31 |
68379 | alkaline phosphatase | - | 3.1.3.1 |
68379 | pyrrolidonyl arylamidase | + | 3.4.19.3 |
68379 | pyrazinamidase | - | 3.5.1.B15 |
68369 | gelatinase | - | |
68369 | beta-glucosidase | - | 3.2.1.21 |
68369 | urease | - | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
68368 | cytochrome oxidase | - | 1.9.3.1 |
68368 | gelatinase | - | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | - | 3.5.1.5 |
68368 | ornithine decarboxylase | - | 4.1.1.17 |
68368 | lysine decarboxylase | - | 4.1.1.18 |
68368 | arginine dihydrolase | - | 3.5.3.6 |
68368 | beta-galactosidase | + | 3.2.1.23 |
122232 | oxidase | - | |
122232 | beta-galactosidase | + | 3.2.1.23 |
122232 | alcohol dehydrogenase | - | 1.1.1.1 |
122232 | catalase | - | 1.11.1.6 |
122232 | lysine decarboxylase | - | 4.1.1.18 |
122232 | ornithine decarboxylase | - | 4.1.1.17 |
122232 | urease | - | 3.5.1.5 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 44143 C14:0 1.7 14 44143 C16:0 26.1 16 44143 C18:0 16.3 18 44143 C16:1 ω7c 3.1 15.819 44143 C18:1 ω9c 29.3 17.769 44143 C18:2 ω6,9c/C18:0 ANTE 23.5 17.724 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API coryne
@ref | NIT | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | Control | RIB | XYL | MAN | MAL | LAC | SAC | GLYG | CAT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
44143 | - | - | + | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - |
44143 | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
44143 | - | - | + | + | - | + | - | - | - | + | + | + | - | - | - | - | - | + | - | - |
122232 | - | + | + | + | - | + | - | - | - | - | + | + | - | - | - | + | - | + | - | - |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
44143 | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1916 | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - |
API ID32E
@ref | ODC | ADH Arg | LDC Lys | URE | LARL | GAT | 5KG | LIP | RP | beta GLU | MAN | MAL | ADO | PLE | beta GUR | MNT | IND | beta NAG | beta GAL | GLU | SAC | LARA | DARL | alpha GLU | alpha GAL | TRE | RHA | INO | CEL | SOR | alphaMAL |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
44143 | - | - | - | - | - | - | - | + | + | - | - | - | - | - | - | + | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - |
API NH
@ref | PEN | GLU | FRU | MAL | SAC | ODC | URE | LIP | PAL | beta GAL | ProA | GGT | IND |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1916 | - | + | + | - | - | - | - | + | - | + | - | + | - |
1916 | + | + | - | - | - | - | + | - | + | - | - | - | - |
1916 | - | + | + | - | - | - | - | + | - | + | - | - | - |
API rID32A
@ref | URE | ADH Arg | alpha GAL | beta GAL | beta GP | alpha GLU | beta GLU | alpha ARA | beta GUR | beta NAG | MNE | RAF | GDC | alpha FUC | NIT | IND | PAL | ArgA | ProA | LGA | PheA | LeuA | PyrA | TyrA | AlaA | GlyA | HisA | GGA | SerA |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
44143 | - | - | - | + | - | - | - | - | - | + | - | - | - | - | - | - | + | + | - | - | + | - | + | + | - | - | - | - | - |
API rID32STR
@ref | ADH Arg | beta GLU | beta GAR | beta GUR | alpha GAL | PAL | RIB | MAN | SOR | LAC | TRE | RAF | SAC | LARA | DARL | CDEX | VP | APPA | beta GAL | PyrA | beta NAG | GTA | HIP | GLYG | PUL | MAL | MEL | MLZ | Mbeta DG | TAG | beta MAN | URE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1916 | + | - | + | - | - | + | - | - | - | + | - | - | - | - | - | - | - | - | - | + | + | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type |
---|---|
1916 | spleen of pig with endocarditis |
44143 | Pig spleen,endocarditis |
122232 | Animal, Pig, spleen |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Infection | #Inflammation | |
#Host | #Mammals | #Suidae (Pig,Swine) |
#Host Body-Site | #Organ | #Spleen |
taxonmaps
- @ref: 69479
- File name: preview.99_855.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15772;96_512;97_590;98_678;99_855&stattab=map
- Last taxonomy: Erysipelothrix
- 16S sequence: AB034200
- Sequence Identity:
- Total samples: 10351
- soil counts: 834
- aquatic counts: 1349
- animal counts: 7958
- plant counts: 210
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
1916 | 2 | Risk group (German classification) |
122232 | 2 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Erysipelothrix rhusiopathiae genes for 16S rRNA, 23S rRNA, 5S rRNA, partial and complete sequences, strain:ATCC19414 | AB019247 | 4867 | ena | 1648 |
20218 | Erysipelothrix rhusiopathiae gene for 16S rRNA, partial sequence | AB034200 | 1497 | ena | 1648 |
1916 | Erysipelothrix rhusiopathiae gene for 16S rRNA, 16S-23S rRNA spacer region, strain:ATCC 19414 | AB055905 | 1594 | ena | 1648 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Erysipelothrix rhusiopathiae NCTC8163 | GCA_900637845 | complete | ncbi | 1648 |
66792 | Erysipelothrix rhusiopathiae ATCC 19414 | GCA_000160815 | contig | ncbi | 525280 |
66792 | Erysipelothrix rhusiopathiae ATCC 19414 | 525280.3 | wgs | patric | 525280 |
66792 | Erysipelothrix rhusiopathiae strain NCTC8163 | 1648.245 | complete | patric | 1648 |
66792 | Erysipelothrix rhusiopathiae ATCC 19414 | 2562617150 | draft | img | 525280 |
66792 | Erysipelothrix rhusiopathiae NCTC8163 | 2836765118 | complete | img | 1648 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
flagellated | no | 98.2 | no |
gram-positive | yes | 88.788 | no |
anaerobic | no | 85.832 | no |
aerobic | no | 95.478 | no |
halophile | yes | 74.795 | no |
spore-forming | no | 93.538 | no |
thermophile | no | 99.255 | yes |
glucose-util | yes | 79.023 | yes |
motile | no | 94.802 | no |
glucose-ferment | yes | 66.583 | yes |
External links
@ref: 1916
culture collection no.: DSM 5055, ATCC 19414, NCTC 8163, CCUG 221, CIP 105957
straininfo link
- @ref: 74857
- straininfo: 45624
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Enzymology | 8427802 | Differentiation of Erysipelothrix rhusiopathiae and Erysipelothrix tonsillarum by sodium dodecyl sulfate-polyacrylamide gel electrophoresis of cell proteins. | Tamura Y, Takahashi T, Zarkasie K, Nakamura M, Yoshimura H | Int J Syst Bacteriol | 10.1099/00207713-43-1-111 | 1993 | Animals, Bacterial Proteins/*isolation & purification, Electrophoresis, Polyacrylamide Gel, Erysipelothrix/*chemistry/*classification, Palatine Tonsil/microbiology, Serotyping, Sodium Dodecyl Sulfate, Species Specificity, Swine | Phylogeny |
Cultivation | 15863286 | Neuraminidase production by Erysipelothrix rhusiopathiae. | Wang Q, Chang BJ, Mee BJ, Riley TV | Vet Microbiol | 10.1016/j.vetmic.2005.01.022 | 2005 | Animals, Culture Media, Erysipelothrix/*enzymology/metabolism, Hemagglutination Tests, Humans, Hydrogen-Ion Concentration, Neuraminidase/*biosynthesis, Peanut Agglutinin/pharmacology | Pathogenicity |
Phylogeny | 19193500 | Characterization of Erysipelothrix rhusiopathiae isolates from poultry, pigs, emus, the poultry red mite and other animals. | Eriksson H, Jansson DS, Johansson KE, Baverud V, Chirico J, Aspan A | Vet Microbiol | 10.1016/j.vetmic.2008.12.016 | 2008 | Animals, *Animals, Domestic, Dromaiidae/microbiology, Erysipelothrix/*classification/genetics/*isolation & purification, Erysipelothrix Infections/*microbiology, Hares/microbiology, Mites/*microbiology, Phoca/microbiology, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Serotyping | Enzymology |
Transcriptome | 24019408 | Characterization and identification of a novel candidate vaccine protein through systematic analysis of extracellular proteins of Erysipelothrix rhusiopathiae. | Shi F, Ogawa Y, Sano A, Harada T, Hirota J, Eguchi M, Oishi E, Shimoji Y | Infect Immun | 10.1128/IAI.00549-13 | 2013 | Amino Acid Sequence, Animals, Antigens, Bacterial/immunology, Bacterial Proteins/administration & dosage/*immunology, Bacterial Vaccines/administration & dosage/*immunology, Erysipelothrix/*immunology, Female, Immunization, Macrophages/immunology, Membrane Proteins/immunology, Mice, Mice, Inbred BALB C, Phagocytosis/immunology, Recombinant Proteins/immunology, Sequence Analysis, Protein, Swine, Swine Erysipelas/*immunology/microbiology/prevention & control, Vaccines, Synthetic/administration & dosage/*immunology | |
Genetics | 24993343 | Complete genome assembly and characterization of an outbreak strain of the causative agent of swine erysipelas--Erysipelothrix rhusiopathiae SY1027. | Kwok AH, Li Y, Jiang J, Jiang P, Leung FC | BMC Microbiol | 10.1186/1471-2180-14-176 | 2014 | Animals, DNA, Bacterial/*chemistry/*genetics, Erysipelothrix/*genetics/isolation & purification, *Genome, Bacterial, Molecular Sequence Annotation, Molecular Sequence Data, Open Reading Frames, *Sequence Analysis, DNA, Swine, Swine Erysipelas/*microbiology, Virulence Factors/genetics | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
1916 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5055) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-5055 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
41686 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/18034 | ||||
44143 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 221) | https://www.ccug.se/strain?id=221 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
68368 | Automatically annotated from API 20E | |||||
68369 | Automatically annotated from API 20NE | |||||
68374 | Automatically annotated from API ID32E | |||||
68377 | Automatically annotated from API NH | |||||
68379 | Automatically annotated from API Coryne | |||||
68380 | Automatically annotated from API rID32A | |||||
68381 | Automatically annotated from API rID32STR | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
74857 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID45624.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
122232 | Curators of the CIP | Collection of Institut Pasteur (CIP 105957) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20105957 |