Strain identifier

BacDive ID: 5350

Type strain: Yes

Species: Enterococcus termitis

Strain Designation: C.J. Portricus UAD1, UAD1

Strain history: CIP <- 2006, CCM <- 2005, LMG, Lactococus lactis subsp. lactis <- NCFB <- C.J. Portricus: strain UAD1

NCBI tax ID(s): 332950 (species)

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General

@ref: 16523

BacDive-ID: 5350

DSM-Number: 22803

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, spore-forming, mesophilic, Gram-positive, ovoid-shaped

description: Enterococcus termitis C.J. Portricus UAD1 is a microaerophile, spore-forming, mesophilic bacterium that was isolated from gut of a termite.

NCBI tax id

  • NCBI tax id: 332950
  • Matching level: species

strain history

@refhistory
16523<- CCM; CCM 7300 <- LMG <- NCFB <- C. J. Portricus
123446CIP <- 2006, CCM <- 2005, LMG, Lactococus lactis subsp. lactis <- NCFB <- C.J. Portricus: strain UAD1

doi: 10.13145/bacdive5350.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Enterococcaceae
  • genus: Enterococcus
  • species: Enterococcus termitis
  • full scientific name: Enterococcus termitis Švec et al. 2006

@ref: 16523

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Enterococcaceae

genus: Enterococcus

species: Enterococcus termitis

full scientific name: Enterococcus termitis Švec et al. 2006

strain designation: C.J. Portricus UAD1, UAD1

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
31631positiveovoid-shapedno
69480no93.108
69480positive100

pigmentation

  • @ref: 31631
  • production: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16523TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
37468MEDIUM 29- Brain heart agaryesDistilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)
123446CIP Medium 29yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=29

culture temp

@refgrowthtypetemperaturerange
16523positivegrowth37mesophilic
31631positivegrowth10-45
31631positiveoptimum30-45
37468positivegrowth37mesophilic
60029positivegrowth37mesophilic

culture pH

@refabilitytypepHPH range
31631positivegrowth7-9.6alkaliphile
31631positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
16523microaerophile
31631aerobe
60029microaerophile

spore formation

@refspore formationconfidence
31631yes
69481yes100
69480no99.936

halophily

@refsaltgrowthtested relationconcentration
31631NaClpositivegrowth6.5 %
31631NaClpositiveoptimum6.5 %

observation

  • @ref: 31631
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3163117057cellobiose+carbon source
3163128757fructose+carbon source
3163128260galactose+carbon source
3163124265gluconate+carbon source
3163117234glucose+carbon source
3163117754glycerol+carbon source
3163117716lactose+carbon source
3163117306maltose+carbon source
3163137684mannose+carbon source
31631506227N-acetylglucosamine+carbon source
3163133942ribose+carbon source
3163117814salicin+carbon source
3163127082trehalose+carbon source
3163118222xylose+carbon source
316314853esculin+hydrolysis
6838129016arginine-hydrolysis
6838116988D-ribose+builds acid from
6838116899D-mannitol-builds acid from
6838130911sorbitol-builds acid from
6838117716lactose+builds acid from
6838127082trehalose+builds acid from
6838116634raffinose-builds acid from
6838117992sucrose-builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin-builds acid from
68381606565hippurate+hydrolysis
6838128087glycogen-builds acid from
6838127941pullulan-builds acid from
6838117306maltose+builds acid from
6838128053melibiose-builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside+builds acid from
6838116443D-tagatose-builds acid from
6838116199urea-hydrolysis

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: no

metabolite tests

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
16523catalase-1.11.1.6
16523cytochrome-c oxidase-1.9.3.1
68381urease-3.5.1.5
68381beta-mannosidase+3.2.1.25
68381glycyl tryptophan arylamidase+
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase-
68381alkaline phosphatase-3.1.3.1
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase+3.2.1.21
68381arginine dihydrolase-3.5.3.6

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
16523-++---+--++----------++--+--+-+-

Isolation, sampling and environmental information

isolation

@refsample type
16523gut of a termite
60029Termite gut
123446Animal, Termite, gut

isolation source categories

Cat1Cat2Cat3
#Host#Arthropoda#Insecta
#Host Body-Site#Gastrointestinal tract#Stomach

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
165231Risk group (German classification)
1234462Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
16523Enterococcus termitis 16S rRNA gene, strain type strain: LMG 8895TAM0399681512ena332950
16523Enterococcus termitis strain DSM 22803, whole genome shotgun sequencing projectJXLF00000000102ena332950

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Enterococcus termitis DSM 22803GCA_001886275scaffoldncbi332950
66792Enterococcus termitis LMG 8895GCA_001730305contigncbi332950
66792Enterococcus termitis strain DSM 22803332950.4wgspatric332950
66792Enterococcus termitis strain LMG 8895332950.6wgspatric332950
66792Enterococcus termitis LMG 88952916559209draftimg332950

GC content

  • @ref: 16523
  • GC-content: 37.1

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes100no
flagellatedno97.578yes
gram-positiveyes92.663yes
anaerobicno93.89yes
aerobicno93.837no
halophileyes79.675yes
spore-formingno79.879yes
glucose-utilyes86.619yes
thermophileno99.328yes
motileno93.857yes
glucose-fermentyes81.259no

External links

@ref: 16523

culture collection no.: CCM 7300, DSM 22803, CCUG 53831, CIP 109180, LMG 8895

straininfo link

  • @ref: 74839
  • straininfo: 3433

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny16514030Enterococcus silesiacus sp. nov. and Enterococcus termitis sp. nov.Svec P, Vancanneyt M, Sedlacek I, Naser SM, Snauwaert C, Lefebvre K, Hoste B, Swings JInt J Syst Evol Microbiol10.1099/ijs.0.63937-02006DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry, Enterococcus/*classification/genetics/physiology, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAPhenotype
Phylogeny28304272Vagococcus humatus sp. nov., isolated from soil beneath a decomposing pig carcass.Sundararaman A, Srinivasan S, Lee SSInt J Syst Evol Microbiol10.1099/ijsem.0.0016252017Animals, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Enterococcaceae/*classification/genetics/isolation & purification, Fatty Acids/chemistry, Peptidoglycan/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Sus scrofa/*microbiologyTranscriptome

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
16523Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22803)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22803
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
31631Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2791528776041
37468Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6892
60029Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 53831)https://www.ccug.se/strain?id=53831
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68381Automatically annotated from API rID32STR
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
74839Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID3433.1StrainInfo: A central database for resolving microbial strain identifiers
123446Curators of the CIPCollection of Institut Pasteur (CIP 109180)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109180