Strain identifier

BacDive ID: 534

Type strain: Yes

Species: Aureimonas frigidaquae

Strain Designation: CW5

Strain history: <- CN Seong, Sunchon Natl. Univ.

NCBI tax ID(s): 424757 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 16080

BacDive-ID: 534

DSM-Number: 21987

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped, colony-forming, pigmented

description: Aureimonas frigidaquae CW5 is a facultative anaerobe, mesophilic, Gram-negative bacterium that forms circular colonies and has a yellow pigmentation.

NCBI tax id

  • NCBI tax id: 424757
  • Matching level: species

strain history

@refhistory
16080<- JCM/RIKEN <- C. N. Seong, Sunchon Natl. Univ., Korea; CW5
67770C. N. Seong CW5.
67771<- CN Seong, Sunchon Natl. Univ.

doi: 10.13145/bacdive534.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Aurantimonadaceae
  • genus: Aureimonas
  • species: Aureimonas frigidaquae
  • full scientific name: Aureimonas frigidaquae (Kim et al. 2008) Rathsack et al. 2011
  • synonyms

    • @ref: 20215
    • synonym: Aurantimonas frigidaquae

@ref: 16080

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Aurantimonadaceae

genus: Aureimonas

species: Aureimonas frigidaquae

full scientific name: Aureimonas frigidaquae (Kim et al. 2008) Rathsack et al. 2011

strain designation: CW5

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
23136negative0.8-1.2 µm0.6-0.8 µmrod-shapedyes
67771negative
69480negative99.806

colony morphology

  • @ref: 23136
  • colony size: 3.0 mm
  • colony shape: circular
  • incubation period: 5 days
  • medium used: TSA

pigmentation

  • @ref: 23136
  • production: yes
  • color: yellow

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16080BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
16080TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)yeshttps://mediadive.dsmz.de/medium/545Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water
16080TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
23136PCA, TSA, NA, R2A, MA and MacConkey agaryes
23136Trypticase Soy Agar (TSA)yes

culture temp

@refgrowthtypetemperaturerange
16080positivegrowth28mesophilic
23136positivemaximum37mesophilic
23136positiveminimum15psychrophilic
23136positiveoptimum25mesophilic
67770positivegrowth30mesophilic
67771positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
23136positiveminimum5.0
23136positivemaximum11.0alkaliphile
23136positiveoptimum7.0

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
23136facultative anaerobe
67771aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.986

halophily

@refsaltgrowthtested relationconcentration
23136NaClpositivemaximum<7 %(w/v)
23136NaClpositiveoptimum0 %(w/v)

observation

  • @ref: 67770
  • observation: quinones: Q-10

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
23136168082-dehydro-D-gluconate-builds acid from
23136174265-dehydro-D-gluconate-builds acid from
2313616443D-tagatose-builds acid from
2313616813galactitol-builds acid from
2313624265gluconate-builds acid from
2313617754glycerol-builds acid from
2313628087glycogen-builds acid from
2313615443inulin-builds acid from
2313617716lactose-builds acid from
2313617306maltose-builds acid from
231366731melezitose-builds acid from
2313643943methyl alpha-D-mannoside-builds acid from
23136320055methyl beta-D-glucopyranoside-builds acid from
2313674863methyl beta-D-xylopyranoside-builds acid from
2313628017starch-builds acid from
2335717521(-)-quinic acid-carbon source
23357645522-hydroxybutyrate-carbon source
23357167632-oxobutanoate-carbon source
23357286442-oxopentanoate-carbon source
23357370543-hydroxybutyrate-carbon source
2335716865gamma-aminobutyric acid-carbon source
23357167244-hydroxybutyrate-carbon source
2335730089acetate-carbon source
2335715963ribitol-carbon source
2335740585alpha-cyclodextrin-carbon source
2335736219alpha-lactose-carbon source
2335773706bromosuccinate-carbon source
2335717057cellobiose-carbon source
2335715570D-alanine-carbon source
2335718333D-arabitol-carbon source
2335715824D-fructose-carbon source
2335715895D-galactonic acid lactone-carbon source
2335712936D-galactose-carbon source
2335730612D-glucarate-carbon source
233578391D-gluconate-carbon source
2335717784D-glucosaminic acid-carbon source
2335716899D-mannitol-carbon source
2335716024D-mannose-carbon source
2335717924D-sorbitol-carbon source
2335717126DL-carnitine-carbon source
2335717113erythritol-carbon source
2335728066gentiobiose-carbon source
2335732323glucuronamide-carbon source
2335717754glycerol-carbon source
2335715978glycerol 3-phosphate-carbon source
2335728087glycogen-carbon source
2335773804glycyl L-aspartic acid-carbon source
2335724741hydroxyproline-carbon source
2335717268myo-inositol-carbon source
2335717240itaconate-carbon source
2335721217L-alaninamide-carbon source
2335716977L-alanine-carbon source
2335773786L-alanylglycine-carbon source
2335730849L-arabinose-carbon source
2335717196L-asparagine-carbon source
2335729991L-aspartate-carbon source
2335718287L-fucose-carbon source
2335729985L-glutamate-carbon source
2335715971L-histidine-carbon source
2335715603L-leucine-carbon source
2335715729L-ornithine-carbon source
2335717203L-proline-carbon source
2335718183L-pyroglutamic acid-carbon source
2335762345L-rhamnose-carbon source
2335717115L-serine-carbon source
2335716857L-threonine-carbon source
2335724996lactate-carbon source
2335717306maltose-carbon source
2335728053melibiose-carbon source
23357320061methyl alpha-D-glucopyranoside-carbon source
2335775146monomethyl succinate-carbon source
2335728037N-acetylgalactosamine-carbon source
2335773784glycyl-l-glutamate-carbon source
2335717272propionate-carbon source
2335733951psicose-carbon source
2335717148putrescine-carbon source
2335715361pyruvate-carbon source
2335716634raffinose-carbon source
23357143136succinamate-carbon source
2335730031succinate-carbon source
2335717992sucrose-carbon source
2335717748thymidine-carbon source
2335732528turanose-carbon source
2335753423tween 40-carbon source
2335716704uridine-carbon source
2335727248urocanic acid-carbon source
2335717151xylitol-carbon source
2313630849L-arabinose-carbon source
2313665328L-xylose-carbon source
2313617306maltose-carbon source
2313626546rhamnose-carbon source
2313617234glucose-fermentation
23136casein-hydrolysis
2313616991dna-hydrolysis
231365291gelatin-hydrolysis
2313628017starch-hydrolysis
2313653426tween 80-hydrolysis
2313618186tyrosine-hydrolysis
2313616136hydrogen sulfide-other
2313615963ribitol+builds acid from
2313627613amygdalin+builds acid from
2313618305arbutin+builds acid from
2313617057cellobiose+builds acid from
2313618333D-arabitol+builds acid from
2313628847D-fucose+builds acid from
231364853esculin+builds acid from
2313628757fructose+builds acid from
2313617234glucose+builds acid from
2313617268myo-inositol+builds acid from
2313618403L-arabitol+builds acid from
2313629864mannitol+builds acid from
23136506227N-acetylglucosamine+builds acid from
2313616634raffinose+builds acid from
2313617814salicin+builds acid from
2313617992sucrose+builds acid from
2335723652dextrin+carbon source
2335715740formate+carbon source
2313617113erythritol+carbon source
2313618287L-fucose+carbon source
2313629864mannitol+carbon source
23136506227N-acetylglucosamine+carbon source
231364853esculin+hydrolysis
2313628066gentiobiose+/-carbon source
2313624265gluconate+/-carbon source
2313633942ribose+/-carbon source

antibiotic resistance

@refChEBImetaboliteis antibioticis resistantresistance conc.is sensitivesensitivity conc.
2313617334penicillinyesyes10 Unit
2313628669bacitracinyesyes10 µg (disc)
2313628001vancomycinyesyes30 µg (disc)
231368309polymyxin byesyes300 Unit
2313628971ampicillinyesyes10 µg (disc)
2313617833gentamicinyesyes10 µg (disc)
2313617076streptomycinyesyes10 µg (disc)
2313648923erythromycinyesyes15 µg (disc)
2313617698chloramphenicolyesyes30 µg (disc)
231366104kanamycinyesyes30 µg (disc)
23136100147nalidixic acidyesyes30 µg (disc)
2313627902tetracyclineyesyes30 µg (disc)

metabolite production

  • @ref: 23136
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: no

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testmethylred-test
2313615688acetoin-
2313617234glucose-

enzymes

@refvalueactivityec
23136acid phosphatase+3.1.3.2
23136alpha-chymotrypsin-3.4.21.1
23136alpha-fucosidase-3.2.1.51
23136alpha-glucosidase-3.2.1.20
23136alpha-mannosidase-3.2.1.24
23136beta-glucuronidase-3.2.1.31
23136catalase+1.11.1.6
23136cystine arylamidase-3.4.11.3
23136cytochrome oxidase+1.9.3.1
23136esterase (C 4)+
23136esterase lipase (C 8)+
23136leucine arylamidase+3.4.11.1
23136lipase (C 14)-
23136lysine decarboxylase-4.1.1.18
23136N-acetyl-beta-glucosaminidase-3.2.1.52
23136ornithine decarboxylase-4.1.1.17
23136valine arylamidase-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
16080water-cooling systemGwangyangRepublic of KoreaKORAsia
23136cooled water sample from an oxygen-producing plant2005-02
67770Water-cooling system in GwangyangRepublic of KoreaKORAsia
67771From cooling waterGwangyangRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Industrial#Plant (Factory)
#Environmental#Aquatic#Freshwater
#Condition#Psychrophilic (<10°C)
#Engineered#Industrial#Engineered product

taxonmaps

  • @ref: 69479
  • File name: preview.99_4581.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_5;96_2285;97_2772;98_3442;99_4581&stattab=map
  • Last taxonomy: Aureimonas frigidaquae
  • 16S sequence: EF373540
  • Sequence Identity:
  • Total samples: 504
  • soil counts: 94
  • aquatic counts: 54
  • animal counts: 330
  • plant counts: 26

Safety information

risk assessment

  • @ref: 16080
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16080
  • description: Aurantimonas frigidaquae strain CW5 16S ribosomal RNA gene, partial sequence
  • accession: EF373540
  • length: 1378
  • database: ena
  • NCBI tax ID: 424757

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aureimonas frigidaquae strain JCM 14755424757.3wgspatric424757
66792Aureimonas frigidaquae JCM 147552700989461draftimg424757
67770Aureimonas frigidaquae JCM 14755GCA_001463905contigncbi424757

GC content

@refGC-contentmethod
1608063.9thermal denaturation, midpoint method (Tm)
2313663.9Thermal denaturation, fluorometry

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno96.938yes
anaerobicno97.97yes
halophileno90.96yes
spore-formingno96.4no
glucose-utilyes89.486no
aerobicyes91.042no
flagellatedno94.211no
motileno85.662no
thermophileno97.949yes
glucose-fermentno89.877yes

External links

@ref: 16080

culture collection no.: DSM 21987, JCM 14755, KCTC 12893

straininfo link

  • @ref: 70212
  • straininfo: 353995

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny18450703Aurantimonas frigidaquae sp. nov., isolated from a water-cooling system.Kim MS, Hoa KT, Baik KS, Park SC, Seong CNInt J Syst Evol Microbiol10.1099/ijs.0.65421-02008Alphaproteobacteria/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fresh Water/*microbiology, Genes, rRNA, Korea, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, *Refrigeration, Sequence Analysis, DNA, Species SpecificityGenetics
Phylogeny21186293Reclassification of Aurantimonas altamirensis (Jurado et al. 2006), Aurantimonas ureilytica (Weon et al. 2007) and Aurantimonas frigidaquae (Kim et al. 2008) as members of a new genus, Aureimonas gen. nov., as Aureimonas altamirensis gen. nov., comb. nov., Aureimonas ureilytica comb. nov. and Aureimonas frigidaquae comb. nov., and emended descriptions of the genera Aurantimonas and Fulvimarina.Rathsack K, Reitner J, Stackebrandt E, Tindall BJInt J Syst Evol Microbiol10.1099/ijs.0.027029-02010Alphaproteobacteria/chemistry/*classification/genetics/*isolation & purification, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/metabolism, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/geneticsGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
16080Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21987)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21987
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
23136Mi Sun Kim, Kieu Thi Quynh Hoa, Keun Sik Baik, Seong Chan Park, Chi Nam Seong10.1099/ijs.0.65421-0Aurantimonas frigidaquae sp. nov., isolated from a water-cooling systemIJSEM 58: 1142-1146 200818450703
23357K. Rathsack, J. Reitner, E. Stackebrandt, B. J. Tindall10.1099/ijs.0.027029-0Reclassification of Aurantimonas altamirensis (Jurado et al. 2006), Aurantimonas ureilytica (Weon et al. 2007) and Aurantimonas frigidaquae (Kim et al. 2008) as members of a new genus, Aureimonas gen. nov., as Aureimonas altamirensis gen. nov., comb. nov., Aureimonas ureilytica comb. nov. and Aureimonas frigidaquae comb. nov., and emended descriptions of the genera Aurantimonas and FulvimarinaIJSEM 61: 2722-2728 201121186293
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
70212Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID353995.1StrainInfo: A central database for resolving microbial strain identifiers