Strain identifier

BacDive ID: 5301

Type strain: Yes

Species: Enterococcus faecium

Strain history: CIP <- 1987, NCFB <- 1956, NCTC <- 1946, A. Grumbach

NCBI tax ID(s): 1218090 (strain), 1352 (species)

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General

@ref: 8846

BacDive-ID: 5301

DSM-Number: 20477

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, antibiotic resistance

description: Enterococcus faecium DSM 20477 is a microaerophile, mesophilic bacterium that has multiple antibiotic resistances.

NCBI tax id

NCBI tax idMatching level
1352species
1218090strain

strain history

@refhistory
8846<- NCDO <- NCTC <- A. Grumbach
67770DSM 20477 <-- NCDO 942 <-- NCTC 7171 <-- A. Grumbach, Serotype 11.
119227CIP <- 1987, NCFB <- 1956, NCTC <- 1946, A. Grumbach

doi: 10.13145/bacdive5301.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Enterococcaceae
  • genus: Enterococcus
  • species: Enterococcus faecium
  • full scientific name: Enterococcus faecium (Orla-Jensen 1919) Schleifer and Kilpper-Bälz 1984

  • synonyms

    • @ref: 20215
    • synonym: Streptococcus faecium

@ref: 8846

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Enterococcaceae

genus: Enterococcus

species: Enterococcus faecium

full scientific name: Enterococcus faecium (Orla-Jensen 1919) Schleifer and Kilpper-Bälz 1984

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480no91.894
69480100positive
119227nopositivecoccus-shaped

colony morphology

@reftype of hemolysishemolysis abilityincubation period
8846alpha11-2 days
119227

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8846COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
8846TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
41268MEDIUM 29- Brain heart agaryesDistilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g)
119227CIP Medium 29yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=29

culture temp

@refgrowthtypetemperaturerange
8846positivegrowth37mesophilic
41268positivegrowth37mesophilic
67770positivegrowth37mesophilic
119227positivegrowth10-45

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
8846microaerophile
119227facultative anaerobe

antibiogram

@refmediumPenicillin Goxacillinampicillinticarcillinmezlocillincefalotincefazolincefotaximeaztreonamimipenemtetracyclinechloramphenicolgentamycinamikacinvancomycinerythromycinlincomycinofloxacinnorfloxacincolistinpipemidic acidnitrofurantoinbacitracinpolymyxin bkanamycinneomycindoxycyclineceftriaxoneclindamycinfosfomycinmoxifloxacinlinezolidnystatinquinupristin/dalfopristinteicoplaninpiperacillin/tazobactamincubation temperatureincubation timeoxygen condition
8846Mueller-Hinton Agar22122824-2622148140243026181824182812-14160016-1814024-2616-1832-34163216-181424-2602818-2020
8846Mueller-Hinton Agar2616302824-26181020-22026-28342816-181824203016180016-1814-16614183420341618320302022371microaerophil
8846Mueller-Hinton Agar2614-163028241812-142002634261614-1622163014-1618001416012143220-22321816300261822-24371microaerophil
8846Mueller-Hinton Agar160161610600018-2018181212141018-20010000100101020n.d.n.d.n.d.n.d.n.d.n.d.n.d.n.d.n.d.37microaerophil
8846Mueller-Hinton Agar22-24122826-282416121402834-3628181826203014-1616-180016-1816024-261834n.d.n.d.n.d.n.d.n.d.n.d.n.d.n.d.n.d.
8846Mueller-Hinton Agar2212-1426-2822-24201682002430261616201826-281414-16001014012-141630183014142802616-182037microaerophil
8846Mueller-Hinton Agar2212-1426-2822-24201682002430261616201826-281414-16001014012-141630183014142802616-182037microaerophil

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.951

halophily

  • @ref: 119227
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 6.5 %

murein

  • @ref: 8846
  • murein short key: A11.31
  • type: A4alpha L-Lys-D-Asp

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
1192274853esculin+hydrolysis
119227606565hippurate+hydrolysis
11922717632nitrate-reduction
11922716301nitrite-reduction
6837717634D-glucose+builds acid from
6837715824D-fructose+builds acid from
6837717306maltose+builds acid from
6837717992sucrose+builds acid from
6837718257ornithine-degradation
6837716199urea-hydrolysis
6837727897tryptophan-energy source
6838129016arginine+hydrolysis
6838116988D-ribose+builds acid from
6838116899D-mannitol+builds acid from
6838130911sorbitol-builds acid from
6838117716lactose+builds acid from
6838127082trehalose+builds acid from
6838116634raffinose-builds acid from
6838117992sucrose+builds acid from
6838130849L-arabinose+builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin+builds acid from
6838128087glycogen-builds acid from
6838127941pullulan-builds acid from
6838117306maltose+builds acid from
6838128053melibiose-builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside+builds acid from
6838116443D-tagatose-builds acid from
6838116199urea-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6837735581indoleno
6838115688acetoinyes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6838115688acetoin+
6837735581indole-
11922715688acetoin+

enzymes

@refvalueactivityec
8846cytochrome-c oxidase-1.9.3.1
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68381urease-3.5.1.5
68381beta-mannosidase+3.2.1.25
68381Alanyl-Phenylalanyl-Proline arylamidase-
68381alkaline phosphatase-3.1.3.1
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase+3.2.1.21
68381arginine dihydrolase+3.5.3.6
68377tryptophan deaminase-4.1.99.1
68377gamma-glutamyltransferase-2.3.2.2
68377proline-arylamidase-3.4.11.5
68377beta-galactosidase+3.2.1.23
68377alkaline phosphatase-3.1.3.1
68377lipase-
68377urease-3.5.1.5
68377ornithine decarboxylase-4.1.1.17
68377beta-lactamase-3.5.2.6
119227oxidase-
119227beta-galactosidase+3.2.1.23
119227alcohol dehydrogenase+1.1.1.1
119227catalase-1.11.1.6
119227gamma-glutamyltransferase-2.3.2.2
119227lysine decarboxylase-4.1.1.18
119227ornithine decarboxylase-4.1.1.17

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119227-+++-++---+--+------

API NH

@refPENGLUFRUMALSACODCURELIPPALbeta GALProAGGTIND
44225-++++----+---

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
8846+++---++-++-++-++-+++++--+--+-+-
8846++----++-++-++-++-++++---+--+-+-
8846+++/----++-++-++-++-+++----+--+-+-
8846+++---++-++-++-++-++++---+--+-+-
8846+++---++-++-++-++----+--+--+-+-
8846+++---++-++-++-++-+++++--+--+-+-

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_23.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_13;96_19;97_19;98_22;99_23&stattab=map
  • Last taxonomy: Enterococcus
  • 16S sequence: LC096216
  • Sequence Identity:
  • Total samples: 55544
  • soil counts: 1007
  • aquatic counts: 2532
  • animal counts: 51351
  • plant counts: 654

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
88462Risk group (German classification)
1192272Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Enterococcus faecium 16S rRNA gene, strain DSM20477AJ2763551533ena1352
20218Enterococcus faecium strain ATCC 19434 16S-23S ribosomal RNA intergenic spacer, partial sequenceAY351322344ena1352
20218Enterococcus faecium strain ATCC 19434 16S ribosomal RNA gene, partial sequenceDQ4118131482ena1352
20218Enterococcus faecium strain DSM 20477 16S ribosomal RNA gene, partial sequenceHQ012007936ena1352
20218Enterococcus faecium strain ATCC 19434 16S ribosomal RNA gene, partial sequenceKC510233815ena1352
20218E.faecium 16S-23S rRNA spacer DNA, strain ATCC 19434X87180344ena1352
20218E.faecium 16S rRNA gene, partial (strain ATTC 19434 (CCUG 542))Y12906366ena1352
8846Enterococcus faecium gene for 16S ribosomal RNA, partial sequence, strain: JCM 8727LC0962161499ena1352
67770Enterococcus faecium 16S rRNA gene, strain LMG 11423AJ3018301651ena1352
67770Enterococcus faecium 16S rRNA gene, strain CECT410TAJ4208001489ena1352
67770Enterococcus faecium gene for 16S ribosomal RNA, partial sequence, strain: JCM 5804LC0718311492ena1352

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Enterococcus faecium NBRC 100486GCA_001544255contigncbi1218090
66792Enterococcus faecium NBRC 1004861218090.3wgspatric1218090
66792Enterococcus faecium strain NCTC71711352.4067wgspatric1352
66792Enterococcus faecium NBRC 1004862731957566draftimg1218090
66792Enterococcus faecium NCTC 71712916553101draftimg1352
67770Enterococcus faecium NCTC7171GCA_900447735contigncbi1352
66792Enterococcus faecium LMG 11423GCA_026953455scaffoldncbi1352

GC content

  • @ref: 67770
  • GC-content: 39
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes82no
motileno94.341no
gram-positiveyes95.56no
anaerobicno96.81yes
aerobicno93.925yes
halophileyes93.83no
spore-formingno91.373no
glucose-utilyes89.35no
flagellatedno98.366no
thermophileno99.671no
glucose-fermentyes87.533no

External links

@ref: 8846

culture collection no.: DSM 20477, ATCC 19434, NCDO 942, NCTC 7171, WDCM 00010, CCUG 542, LMG 8149, LMG 11423, CCM 7167, JCM 5804, BCRC 10067, CECT 410, CFBP 4248, CGMCC 1.2136, CIP 103014, HAMBI 1710, JCM 8727, NBRC 100485, NBRC 100486, NCIMB 11508, VTT E-93204

straininfo link

  • @ref: 74791
  • straininfo: 9315

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny7699030DNA hybridization and contour-clamped homogeneous electric field electrophoresis for identification of enterococci to the species level.Donabedian S, Chow JW, Shlaes DM, Green M, Zervos MJJ Clin Microbiol10.1128/jcm.33.1.141-145.19951995Blotting, Southern, DNA, Bacterial/*genetics, Electrophoresis, Agar Gel/methods, Enterococcus/*classification/genetics, Gram-Negative Bacterial Infections/microbiology, Humans, Nucleic Acid Hybridization, Species SpecificityEnzymology
Genetics9561745Characterization of new insertion-like sequences of Enterococcus hirae and their dissemination among clinical Enterococcus faecium isolates.Sechi LA, Franklin R, Dupre I, Zanetti S, Fadda G, Daneo-Moore LFEMS Microbiol Lett10.1111/j.1574-6968.1998.tb12944.x1998Base Sequence, DNA Fingerprinting, Enterococcus/classification/*genetics, Enterococcus faecium/*genetics, Molecular Sequence Data, Repetitive Sequences, Nucleic AcidPhylogeny
Genetics10188274Determination of the nucleotide sequence of the 23S ribosomal RNA and flanking spacers of an Enterococcus faecium strain, reveals insertion-deletion events in the ribosomal spacer 1 of enterococci.Naimi A, Beck G, Monique M, Lefebvre G, Branlanti CSyst Appl Microbiol10.1016/S0723-2020(99)80023-X1999Base Sequence, Enterococcus faecium/*genetics, Molecular Sequence Data, RNA, Bacterial/*chemistry, RNA, Ribosomal, 23S/*chemistry
Phylogeny10543832Probiotics shown to change bacterial community structure in the avian gastrointestinal tract.Netherwood T, Gilbert HJ, Parker DS, O'Donnell AGAppl Environ Microbiol10.1128/AEM.65.11.5134-5138.19991999Aging, Animals, Bacillaceae/genetics, Base Sequence, Cellulase/genetics, Chickens, DNA Primers, DNA, Bacterial/genetics/isolation & purification, DNA, Ribosomal/genetics, Digestive System/drug effects/*microbiology, Drug Resistance, Microbial/genetics, Enterococcus faecalis/genetics/isolation & purification/*physiology, Enterococcus faecium/genetics/isolation & purification/*physiology, Erythromycin, Molecular Sequence Data, Polymerase Chain Reaction, Probiotics/*pharmacology, RNA, Ribosomal, 16S/geneticsEnzymology
Metabolism11900060Mechanisms of resistance to imipenem in imipenem-resistant, ampicillin-sensitive Enterococcus faecium.El Amin N, Lund B, Tjernlund A, Lundberg C, Jalakas K, Wretlind BAPMIS10.1034/j.1600-0463.2001.d01-148.x2001Ampicillin/*pharmacology, Ampicillin Resistance/genetics, *Bacterial Proteins, Binding Sites/genetics, Binding, Competitive, Carrier Proteins/chemistry/genetics/metabolism, DNA, Bacterial/genetics, Drug Resistance, Bacterial/genetics, Enterococcus faecium/*drug effects/genetics/metabolism, *Hexosyltransferases, Humans, Imipenem/*pharmacology, In Vitro Techniques, Molecular Weight, Muramoylpentapeptide Carboxypeptidase/chemistry/genetics/metabolism, Mutation, Penicillin-Binding Proteins, *Peptidyl TransferasesPathogenicity
Genetics11958930Physical and genetic map of Enterococcus faecium ATCC19434 and demonstration of intra- and interspecific genomic diversity in enterococci.Oana K, Okimura Y, Kawakami Y, Hayashida N, Shimosaka M, Okazaki M, Hayashi T, Ohnishi MFEMS Microbiol Lett10.1111/j.1574-6968.2002.tb11041.x2002Chromosomes, Bacterial/*chemistry, Cloning, Molecular, Deoxyribonucleases, Type II Site-Specific, Endodeoxyribonucleases, Enterococcus/*genetics, Enterococcus faecium/*genetics, Genetic Variation, Genome, Bacterial, Molecular Sequence Data, Physical Chromosome Mapping, rRNA OperonEnzymology
Enzymology12534813Isolation and biochemical characterisation of enterocins produced by enterococci from different sources.Foulquie Moreno MR, Callewaert R, Devreese B, Van Beeumen J, De Vuyst LJ Appl Microbiol10.1046/j.1365-2672.2003.01823.x2003Animals, Bacteriocins/genetics, Bridged-Ring Compounds/chemistry/*isolation & purification, Electrophoresis, Polyacrylamide Gel/methods, Enterococcus/genetics/*metabolism, Enterococcus faecalis/genetics/metabolism, Enterococcus faecium/genetics/metabolism, Genes, Bacterial/genetics, Hemolysis, Horses/microbiology, Hot Temperature, Humans, Hydrogen-Ion Concentration, Microbial Sensitivity Tests/methods, Polymerase Chain Reaction/methods, Sheep/microbiology, Vancomycin ResistanceMetabolism
Pathogenicity12650667Growth inhibition of intestinal bacteria and mutagenicity of 2-, 3-, 4-aminobiphenyls, benzidine, and biphenyl.Chung KT, Adris PToxicol In Vitro10.1016/s0887-2333(02)00131-52003Aminobiphenyl Compounds/*toxicity, Benzidines/*toxicity, Biphenyl Compounds/*toxicity, Gram-Negative Bacteria/drug effects/growth & development, Gram-Positive Bacteria/drug effects/growth & development, Humans, Intestines/*microbiology, Mutagenicity Tests, Mutagens/*toxicity
Cultivation12859761Characteristics and identification of enterocins produced by Enterococcus faecium JCM 5804T.Park SH, Itoh K, Fujisawa TJ Appl Microbiol10.1046/j.1365-2672.2003.01975.x2003Amino Acid Sequence, Animals, Bacteriocins/*biosynthesis/genetics/pharmacology, Bacteriological Techniques, Base Sequence, Culture Media, Enterococcus faecium/genetics/*metabolism, Genes, Bacterial, Hydrogen-Ion Concentration, Lactobacillus/drug effects, Microbial Sensitivity Tests, Molecular Sequence Data, Polymerase Chain Reaction/methods, TemperatureGenetics
Phylogeny14607400Construction and use of a computerized DNA fingerprint database for lactic acid bacteria from silage.Chan RK, Wortman CR, Smiley BK, Hendrick CAJ Microbiol Methods10.1016/s0167-7012(03)00186-62003DNA Fingerprinting/*methods, DNA, Bacterial/chemistry/genetics/metabolism, *Databases, Nucleic Acid, Deoxyribonuclease EcoRI/metabolism, Electrophoresis, Agar Gel, Image Processing, Computer-Assisted, Lactobacillus/*classification/genetics, Phylogeny, Ribotyping, Silage/*microbiologyMetabolism
Pathogenicity16687591Combination of known and unknown mechanisms confers high-level resistance to fluoroquinolones in Enterococcus faecium.Oyamada Y, Ito H, Fujimoto K, Asada R, Niga T, Okamoto R, Inoue M, Yamagishi JIJ Med Microbiol10.1099/jmm.0.46303-02006Anti-Bacterial Agents/*pharmacology, Base Sequence, DNA Gyrase/genetics, DNA Topoisomerase IV/genetics, DNA, Bacterial/genetics, Drug Resistance, Bacterial/genetics, Enterococcus faecium/*drug effects/enzymology/*genetics/isolation & purification, Fluoroquinolones/*pharmacology, Genes, Bacterial, Humans, In Vitro Techniques, MutationEnzymology
Stress18407366Diversity of stress responses in dairy thermophilic streptococci.Zotta T, Ricciardi A, Ciocia F, Rossano R, Parente EInt J Food Microbiol10.1016/j.ijfoodmicro.2008.02.0242008*Adaptation, Physiological, Bacterial Proteins/analysis/metabolism, Cluster Analysis, Colony Count, Microbial/methods, Dairy Products/*microbiology, Electrophoresis, Polyacrylamide Gel/methods, Food Handling/*methods, Food Microbiology, Hot Temperature, Hydrogen-Ion Concentration, Molecular Weight, Osmotic Pressure, Oxidative Stress, Species Specificity, Streptococcus/*physiology, Streptococcus thermophilus/*physiologyEnzymology
Phylogeny18599707Enterococcus thailandicus sp. nov., isolated from fermented sausage ('mum') in Thailand.Tanasupawat S, Sukontasing S, Lee JSInt J Syst Evol Microbiol10.1099/ijs.0.65535-02008Enterococcus/*classification/genetics/isolation & purification, Fermentation, *Food Microbiology, Meat Products/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Species Specificity, ThailandBiotechnology
Pathogenicity20583474The influence of some probiotic supernatants on the growth and virulence features expression of several selected enteroaggregative E. coli clinical strains.Lazar V, Miyazaki Y, Hanawa T, Chifiriuc MC, Ditu LM, Marutescu L, Bleotu C, Kamiya SRoum Arch Microbiol Immunol2009Bacterial Adhesion, Bifidobacterium/growth & development, Cell Line, Colony Count, Microbial, Culture Media, Conditioned/chemistry/*pharmacology, Diarrhea/microbiology, Enterococcus faecium/growth & development, Epithelial Cells/microbiology, Escherichia coli/drug effects/*growth & development/*pathogenicity, Escherichia coli Infections/microbiology, Humans, Lactobacillus casei/growth & development, *Probiotics, VirulenceCultivation
Metabolism20689729Modelling the biphasic growth and product formation by Enterococcus faecium CECT 410 in realkalized fed-batch fermentations in whey.Guerra NP, Fajardo P, Fucinos C, Amado IR, Alonso E, Torrado A, Pastrana LJ Biomed Biotechnol10.1155/2010/2902862010Acetic Acid/metabolism, Animals, Bioreactors/*microbiology, Butylene Glycols/metabolism, Enterococcus faecium/growth & development/metabolism/*physiology, Ethanol/metabolism, Fermentation/physiology, Hydrogen-Ion Concentration, Kinetics, Lactose/metabolism, Logistic Models, Milk/*metabolism, *Models, BiologicalEnzymology
Phylogeny22003038Enterococcus lactis sp. nov., from Italian raw milk cheeses.Morandi S, Cremonesi P, Povolo M, Brasca MInt J Syst Evol Microbiol10.1099/ijs.0.030825-02011Bacterial Typing Techniques, Cheese/*microbiology, DNA, Bacterial/genetics, DNA, Ribosomal Spacer/genetics, Enterococcus/*classification/genetics/isolation & purification, Fatty Acids/analysis, Genes, Bacterial, Italy, Molecular Sequence Data, Phenotype, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics
22114599Enterococcus faecium WB2000 Inhibits Biofilm Formation by Oral Cariogenic Streptococci.Suzuki N, Yoneda M, Hatano Y, Iwamoto T, Masuo Y, Hirofuji TInt J Dent10.1155/2011/8341512011
Phylogeny27260143Enterococcus Xinjiangensis sp. nov., Isolated from Yogurt of Xinjiang, China.Ren X, Li M, Guo DCurr Microbiol10.1007/s00284-016-1065-12016Bacterial Proteins/genetics/metabolism, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Enterococcus/classification/genetics/*isolation & purification/metabolism, Fermentation, Phylogeny, RNA, Ribosomal, 16S/genetics, Yogurt/*microbiologyMetabolism
Enzymology27894288Bactericidal and antioxidant properties of essential oils from the fruits Dennettia tripetala G. Baker.Okoh SO, Iweriegbor BC, Okoh OO, Nwodo UU, I Okoh ABMC Complement Altern Med10.1186/s12906-016-1459-42016Animals, Annonaceae/*chemistry/toxicity, Anti-Bacterial Agents/*isolation & purification/pharmacology/toxicity, Antioxidants/*pharmacology/toxicity, Cytotoxins/toxicity, Free Radical Scavengers/pharmacology/toxicity, Fruit/chemistry, Hemolysis, Microbial Sensitivity Tests, Oils, Volatile/*pharmacology/toxicity, Plant Extracts/*pharmacology/toxicity, Plant Oils/*pharmacology/toxicity, SheepPhylogeny
Pathogenicity31678185Comparative study of host-associated and commercial probiotic effects on serum and mucosal immune parameters, intestinal microbiota, digestive enzymes activity and growth performance of roach (Rutilus rutilus caspicus) fingerlings.Tarkhani R, Imani A, Hoseinifar SH, Ashayerizadeh O, Sarvi Moghanlou K, Manaffar R, Van Doan H, Reverter MFish Shellfish Immunol10.1016/j.fsi.2019.10.0632019Animal Feed/analysis, Animals, Cyprinidae/growth & development/*immunology/metabolism/microbiology, Diet/veterinary, Dose-Response Relationship, Drug, Enterococcus faecium/*chemistry, Gastrointestinal Microbiome/*drug effects, Immunity, Mucosal/*drug effects, Probiotics/administration & dosage/*pharmacology, Random AllocationEnzymology
Pathogenicity31767028Gut-derived Enterococcus faecium from ulcerative colitis patients promotes colitis in a genetically susceptible mouse host.Seishima J, Iida N, Kitamura K, Yutani M, Wang Z, Seki A, Yamashita T, Sakai Y, Honda M, Yamashita T, Kagaya T, Shirota Y, Fujinaga Y, Mizukoshi E, Kaneko SGenome Biol10.1186/s13059-019-1879-92019Animals, Case-Control Studies, Colitis/etiology/pathology, Colitis, Ulcerative/drug therapy/*microbiology, Colon/pathology, Crohn Disease/microbiology, Disease Models, Animal, Drug Therapy, Combination, Enterococcus faecalis/genetics/*pathogenicity, Fecal Microbiota Transplantation, Feces/microbiology, Female, *Gastrointestinal Microbiome, Humans, Interleukin-10/genetics, Male, *Metagenome, Mice, Mice, Inbred C57BLGenetics
Pathogenicity31794906Isolation and characterization of Enterococcus faecium DSM 20477 with ability to secrete antimicrobial substance for the inhibition of oral pathogen Streptococcus mutans UKMCC 1019.Ng ZJ, Zarin MA, Lee CK, Phapugrangkul P, Tan JSArch Oral Biol10.1016/j.archoralbio.2019.1046172019Anti-Bacterial Agents, *Anti-Infective Agents/pharmacology, Biofilms, *Dental Caries/microbiology, *Enterococcus faecium/isolation & purification/physiology, Humans, *Streptococcus mutans/drug effects/pathogenicityPhylogeny
33818964Identification of Dairy Fungal Contamination and Reduction of Aflatoxin M1 Amount by Three Acid and Bile Resistant Probiotic Bacteria.Faghihi Shahrestani F, Tajabadi Ebrahimi M, Bayat M, Hashemi J, Razavilar VArch Razi Inst10.22092/ari.2019.126572.13472021Aflatoxin M1, Animals, Bile/chemistry, Cattle, Female, Food Contamination, Fungi, Iran, *Lactobacillales, Milk/chemistry, *Probiotics, Saccharomyces
34395028Development of a colorimetric enzymatic assay method for aromatic biogenic monoamine-producing decarboxylases.Kim YC, Lee J, Park JH, Mah JH, Kim SY, Kim YWFood Sci Biotechnol10.1007/s10068-021-00938-42021
Phylogeny34402778Genome-based studies indicate that the Enterococcus faecium Clade B strains belong to Enterococcus lactis species and lack of the hospital infection associated markers.Belloso Daza MV, Cortimiglia C, Bassi D, Cocconcelli PSInt J Syst Evol Microbiol10.1099/ijsem.0.0049482021Anti-Bacterial Agents, Bacterial Typing Techniques, Base Composition, *Cross Infection/microbiology, DNA, Bacterial/genetics, Enterococcus/*classification, *Enterococcus faecium/classification, Fatty Acids/chemistry, Humans, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAPathogenicity
36333643Characterization of lactic acid bacteria isolated from the poultry intestinal environment with anti-Salmonella activity in vitro.Hidalgo VM, Babot JD, Fernandez MM, Perez Chaia A, Audisio C, Apella MCBraz J Microbiol10.1007/s42770-022-00860-92022

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8846Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20477)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20477
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
41268Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/14764
44225Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 542)https://www.ccug.se/strain?id=542
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68377Automatically annotated from API NH
68381Automatically annotated from API rID32STR
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
74791Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID9315.1StrainInfo: A central database for resolving microbial strain identifiers
119227Curators of the CIPCollection of Institut Pasteur (CIP 103014)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103014