Strain identifier

BacDive ID: 526

Type strain: Yes

Species: Aurantimonas coralicida

Strain Designation: WP1

Strain history: CIP <- 2002, E.B.M. Denner, Inst. Mikrobiol. Genetik, Univ. Wien, Austria: strain WP1

NCBI tax ID(s): 1121027 (strain), 182270 (species)

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General

@ref: 5543

BacDive-ID: 526

DSM-Number: 14790

keywords: genome sequence, Bacteria, aerobe, slightly halophilic, mesophilic, Gram-negative, motile, rod-shaped, colony-forming, animal pathogen

description: Aurantimonas coralicida WP1 is an aerobe, slightly halophilic, mesophilic animal pathogen that forms circular colonies and was isolated from coral reef.

NCBI tax id

NCBI tax idMatching level
1121027strain
182270species

strain history

@refhistory
5543<- E. B. M. Denner; WP1 <- M. Heyes <- L. L. Richardson
407072002, E.B.M. Denner, Inst. Mikrobiol. Genetik, Univ. Wien, Austria: strain WP1
118747CIP <- 2002, E.B.M. Denner, Inst. Mikrobiol. Genetik, Univ. Wien, Austria: strain WP1

doi: 10.13145/bacdive526.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Hyphomicrobiales
  • family: Aurantimonadaceae
  • genus: Aurantimonas
  • species: Aurantimonas coralicida
  • full scientific name: Aurantimonas coralicida Denner et al. 2003

  • synonyms

    @refsynonym
    20215Aurantimonas manganoxidans
    20215Aurantimonas manganoxydans

@ref: 5543

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Aurantimonadaceae

genus: Aurantimonas

species: Aurantimonas coralicida

full scientific name: Aurantimonas coralicida Denner et al. 2003 emend. Rathsack et al. 2011

strain designation: WP1

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityflagellum arrangementconfidence
23131negative1.5-2.5 µm1.0 µmrod-shapedyespolar
69480negative99.966
118747negativerod-shapedyes

colony morphology

  • @ref: 23131
  • colony color: golden-orange
  • colony shape: circular
  • incubation period: 2 days
  • medium used: Bacto marine agar 2216, TSA, R2A agar with 3-2 % (w/v) sea salts

pigmentation

  • @ref: 23131
  • production: yes
  • color: Intracellular pigments (carotenoids)

multimedia

@refmultimedia contentcaptionintellectual property rights
66793EM_DSM_14790_1.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_14790_2.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_14790_3.jpgelectron microscopic image© HZI/Manfred Rohde
66793EM_DSM_14790_4.jpgelectron microscopic image© HZI/Manfred Rohde

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5543BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
23131Bacto marine agar 2216yes
23131Bacto marine agar 2216, TSA, R2A agar with 3-2 % (w/v) sea saltsyes
40707Marine agar (MA)yesDistilled water make up to (1000.000 ml);Marine agar (55.100 g)
118747CIP Medium 13yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=13

culture temp

@refgrowthtypetemperaturerange
5543positivegrowth28mesophilic
23131positivegrowth28mesophilic
23131positivemaximum45thermophilic
23131positiveminimum4psychrophilic
40707positivegrowth25mesophilic
60068positivegrowth30mesophilic
118747positivegrowth5-37
118747nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
23131aerobe
60068aerobe

spore formation

@refspore formationconfidence
23131no
69481no100
69480no99.996

halophily

  • @ref: 23131
  • halophily level: slightly halophilic
  • salt: NaCl
  • growth: no
  • tested relation: growth

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2313127613amygdalin-builds acid from
2313122599arabinose-builds acid from
2313117268myo-inositol-builds acid from
2313137684mannose-builds acid from
2313130911sorbitol-builds acid from
2313117992sucrose-builds acid from
2313117521(-)-quinic acid-carbon source
23131645522-hydroxybutyrate-carbon source
23131309162-oxoglutarate-carbon source
23131286442-oxopentanoate-carbon source
23131370543-hydroxybutyrate-carbon source
23131182404-hydroxy-L-proline-carbon source
23131167244-hydroxybutyrate-carbon source
23131181014-hydroxyphenylacetic acid-carbon source
2313117128adipate-carbon source
2313173706bromosuccinate-carbon source
2313127689decanoate-carbon source
2313116383cis-aconitate-carbon source
2313116947citrate-carbon source
2313115570D-alanine-carbon source
2313118333D-arabitol-carbon source
2313112931D-galactonate-carbon source
2313130612D-glucarate-carbon source
2313117784D-glucosaminic acid-carbon source
2313114314D-glucose 6-phosphate-carbon source
2313115748D-glucuronate-carbon source
2313116899D-mannitol-carbon source
2313116523D-serine-carbon source
2313117924D-sorbitol-carbon source
2313117126DL-carnitine-carbon source
2313117113erythritol-carbon source
2313116000ethanolamine-carbon source
2313115740formate-carbon source
2313116865gamma-aminobutyric acid-carbon source
2313129042glucose 1-phosphate-carbon source
2313132323glucuronamide-carbon source
2313115978glycerol 3-phosphate-carbon source
2313117596inosine-carbon source
2313117240itaconate-carbon source
2313129991L-aspartate-carbon source
2313115603L-leucine-carbon source
2313115729L-ornithine-carbon source
2313117295L-phenylalanine-carbon source
2313118183L-pyroglutamic acid-carbon source
2313115792malonate-carbon source
2313117306maltose-carbon source
2313129864mannitol-carbon source
2313117268myo-inositol-carbon source
23131506227N-acetylglucosamine-carbon source
2313118401phenylacetate-carbon source
2313150048phenylethylamine-carbon source
2313117148putrescine-carbon source
2313141865sebacic acid-carbon source
23131143136succinamate-carbon source
2313130031succinate-carbon source
2313117748thymidine-carbon source
2313117151xylitol-carbon source
2313127897tryptophan-energy source
231314853esculin-hydrolysis
231315291gelatin-hydrolysis
2313117632nitrate-reduction
2313117234glucose+builds acid from
2313128053melibiose+builds acid from
2313126546rhamnose+builds acid from
2313130089acetate+carbon source
2313140585alpha-cyclodextrin+carbon source
2313117925alpha-D-glucose+carbon source
2313136219alpha-lactose+carbon source
2313122599arabinose+carbon source
2313117057cellobiose+carbon source
2313115824D-fructose+carbon source
2313112936D-galactose+carbon source
2313118024D-galacturonic acid+carbon source
231318391D-gluconate+carbon source
2313116024D-mannose+carbon source
2313128053melibiose+carbon source
2313116634raffinose+carbon source
2313116551D-trehalose+carbon source
2313123652dextrin+carbon source
2313128066gentiobiose+carbon source
2313124265gluconate+carbon source
2313117234glucose+carbon source
2313117754glycerol+carbon source
2313128087glycogen+carbon source
2313173804glycyl L-aspartic acid+carbon source
2313121217L-alaninamide+carbon source
2313116977L-alanine+carbon source
2313173786L-alanylglycine+carbon source
2313130849L-arabinose+carbon source
2313129985L-glutamate+carbon source
2313115971L-histidine+carbon source
2313162345L-rhamnose+carbon source
2313117115L-serine+carbon source
231316359lactulose+carbon source
2313125115malate+carbon source
2313137684mannose+carbon source
23131320055methyl beta-D-glucopyranoside+carbon source
2313175146monomethyl succinate+carbon source
2313173784glycyl-l-glutamate+carbon source
2313117992sucrose+carbon source
2313132528turanose+carbon source
2313153423tween 40+carbon source
2313153426tween 80+carbon source
2313116704uridine+carbon source
2313115963ribitol+/-carbon source
2313117196L-asparagine+/-carbon source
2313118287L-fucose+/-carbon source
2313117203L-proline+/-carbon source
2313116857L-threonine+/-carbon source
2313124996lactate+/-carbon source
2313117306maltose+/-carbon source
2313151850methyl pyruvate+/-carbon source
2313128037N-acetylgalactosamine+/-carbon source
23131506227N-acetylglucosamine+/-carbon source
2313117272propionate+/-carbon source
2313133951psicose+/-carbon source
2313127248urocanic acid+/-carbon source
11874716947citrate-carbon source
1187474853esculin-hydrolysis
11874717632nitrate-reduction
11874716301nitrite-reduction
11874717234glucose-degradation

antibiotic resistance

@refChEBImetaboliteis antibioticis resistantresistance conc.is sensitivesensitivity conc.
2313118208penicillin gyesyes10 Unit
231318309polymyxin byesyes300 Unit
2313128971ampicillinyesyes10 µg (disc)
2313128669bacitracinyesyes10 µg (disc)
2313137943colistinyesyes10 µg (disc)
2313128001vancomycinyesyes10 µg (disc)
231316472lincomycinyesyes15 µg (disc)
231316827methicillinyesyes5 µg (disc)
231315195furazolidoneyesyes50 µg (disc)
2313148923erythromycinyesyes10 µg (disc)
2313171321fusidateyesyes10 µg (disc)
2313117833gentamicinyesyes10 µg (disc)
231319215spectinomycinyesyes10 µg (disc)
2313117076streptomycinyesyes10 µg (disc)
2313127902tetracyclineyesyes10 µg (disc)
2313171415nitrofurantoinyesyes100 µg (disc)
231312676amoxicillinyesyes30 µg (disc)
2313117698chloramphenicolyesyes30 µg (disc)
231316104kanamycinyesyes30 µg (disc)
23131100241ciprofloxacinyesyes5 µg (disc)

metabolite production

@refChebi-IDmetaboliteproduction
2313135581indoleno
2313115688acetoinno
11874735581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole testmethylred-test
2313115688acetoin-
2313135581indole-
11874715688acetoin-
11874717234glucose-

enzymes

@refvalueactivityec
23131acid phosphatase+3.1.3.2
23131alkaline phosphatase+3.1.3.1
23131alpha-fucosidase-3.2.1.51
23131alpha-galactosidase-3.2.1.22
23131alpha-glucosidase-3.2.1.20
23131alpha-mannosidase-3.2.1.24
23131arginine decarboxylase+4.1.1.19
23131beta-galactosidase-3.2.1.23
23131beta-glucosidase-3.2.1.21
23131beta-glucuronidase-3.2.1.31
23131catalase+1.11.1.6
23131chymotrypsin-3.4.4.5
23131cystine arylamidase-3.4.11.3
23131cytochrome oxidase+1.9.3.1
23131esterase (C 4)+
23131esterase lipase (C 8)+
23131leucine arylamidase+3.4.11.1
23131lipase (C 14)-
23131lysine decarboxylase-4.1.1.18
23131N-acetyl-beta-glucosaminidase-3.2.1.52
23131naphthol-AS-BI-phosphohydrolase+
23131ornithine decarboxylase-4.1.1.17
23131trypsin-3.4.21.4
23131tryptophan deaminase-4.1.99.1
23131urease+3.5.1.5
23131valine arylamidase-
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
118747oxidase+
118747beta-galactosidase-3.2.1.23
118747alcohol dehydrogenase-1.1.1.1
118747gelatinase-
118747amylase-
118747caseinase-3.4.21.50
118747catalase+1.11.1.6
118747tween esterase-
118747lecithinase-
118747lipase-
118747lysine decarboxylase-4.1.1.18
118747ornithine decarboxylase-4.1.1.17
118747phenylalanine ammonia-lyase-4.3.1.24
118747protease-
118747tryptophan deaminase-
118747urease+3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
118747-+++-++-+-++--------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation datesampling date
5543coral reefnorthern Florida Keys, French ReefUSAUSANorth America
23131diseased colony of the scleractinian coral Dichocoenia stokesi1995-08
60068Diseased tissue of a colony of the coralUSAUSANorth America1995
118747Diseased tissue of a colony of the coral Dichocoenia stokesiUnited States of AmericaUSANorth America1995

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Coral reef
#Host#Invertebrates (Other)#Cnidaria (Corals)

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
5543yes1Risk group (German classification)
1187471Risk group (French classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aurantimonas coralicida DSM 14790GCA_000421645contigncbi1121027
66792Aurantimonas coralicida DSM 14790GCA_001463825contigncbi182270
66792Aurantimonas coralicida DSM 147901121027.3wgspatric1121027
66792Aurantimonas coralicida strain DSM 14790182270.4wgspatric182270
66792Aurantimonas coralicida DSM 147902523533557draftimg1121027
66792Aurantimonas coralicida DSM 147902660238272draftimg1121027

GC content

@refGC-contentmethod
554366.3
2313166.3fluorimetric

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes86.607no
flagellatedyes52.815yes
gram-positiveno97.767yes
anaerobicno97.269yes
aerobicyes93.751no
halophileno65.26no
spore-formingno96.613no
thermophileno97.252no
glucose-utilyes90.777no
glucose-fermentno92.065no

External links

@ref: 5543

culture collection no.: DSM 14790, CCUG 53900, CIP 107386

straininfo link

  • @ref: 70204
  • straininfo: 89746

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny12892136Aurantimonas coralicida gen. nov., sp. nov., the causative agent of white plague type II on Caribbean scleractinian corals.Denner EBM, Smith GW, Busse HJ, Schumann P, Narzt T, Polson SW, Lubitz W, Richardson LLInt J Syst Evol Microbiol10.1099/ijs.0.02359-02003Alphaproteobacteria/*classification/genetics/metabolism/*pathogenicity, Animals, Anthozoa/*microbiology, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/genetics, Microscopy, Electron, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/geneticsGenetics
Phylogeny27453213Aurantimonas endophytica sp. nov., a novel endophytic bacterium isolated from roots of Anabasis elatior (C. A. Mey.) Schischk.Liu BB, Wang HF, Li QL, Zhou XK, Zhang YG, Xiao M, Li QQ, Zhang W, Li WJInt J Syst Evol Microbiol10.1099/ijsem.0.0013202016Alphaproteobacteria/*classification/genetics/isolation & purification, Amaranthaceae/*microbiology, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, Pigmentation, Plant Roots/*microbiology, RNA, Ribosomal, 16S/genetics, Salt-Tolerant Plants/microbiology, Sequence Analysis, DNA, Ubiquinone/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5543Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 14790)https://www.dsmz.de/collection/catalogue/details/culture/DSM-14790
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
23131Ewald B. M. Denner, Garriet W. Smith, Hans-Jürgen Busse, Peter Schumann, Thomas Narzt, Shawn W. Polson, Werner Lubitz,Laurie L. Richardson10.1099/ijs.0.02359-0Aurantimonas coralicida gen. nov., sp. nov., the causative agent of white plague type II on Caribbean scleractinian coralsIJSEM 53: 1115-1122 200312892136
40707Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/4815
60068Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 53900)https://www.ccug.se/strain?id=53900
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66793Mukherjee et al.10.1038/nbt.3886GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life 35: 676-683 201728604660
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
70204Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID89746.1StrainInfo: A central database for resolving microbial strain identifiers
118747Curators of the CIPCollection of Institut Pasteur (CIP 107386)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107386