Strain identifier
BacDive ID: 5246
Type strain:
Species: Shimwellia blattae
Strain Designation: 9005-74
Strain history: CIP <- 1996, PAD Grimont, Inst. Pasteur, Paris, France <- CDC: strain 9005-74 <- N.R.H. Burgess
NCBI tax ID(s): 630626 (strain), 563 (species)
General
@ref: 1694
BacDive-ID: 5246
DSM-Number: 4481
keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative
description: Shimwellia blattae 9005-74 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from hindgut of cockroach.
NCBI tax id
NCBI tax id | Matching level |
---|---|
563 | species |
630626 | strain |
strain history
@ref | history |
---|---|
1694 | <- ATCC <- CDC, 9005-74 <- N.R.H. Burgess |
67770 | Y. Kosako <-- R. Sakazaki <-- CDC 9005-74 <-- N. R. H. Burgess. |
116827 | CIP <- 1996, PAD Grimont, Inst. Pasteur, Paris, France <- CDC: strain 9005-74 <- N.R.H. Burgess |
doi: 10.13145/bacdive5246.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Shimwellia
- species: Shimwellia blattae
- full scientific name: Shimwellia blattae (Burgess et al. 1973) Priest and Barker 2010
synonyms
- @ref: 20215
- synonym: Escherichia blattae
@ref: 1694
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Enterobacteriaceae
genus: Shimwellia
species: Shimwellia blattae
full scientific name: Shimwellia blattae (Burgess et al. 1973) Priest and Barker 2010
strain designation: 9005-74
type strain: yes
Morphology
cell morphology
@ref | gram stain | confidence | cell shape | motility |
---|---|---|---|---|
69480 | negative | 99.913 | ||
116827 | negative | rod-shaped | no |
colony morphology
- @ref: 116827
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
1694 | NUTRIENT AGAR (DSMZ Medium 1) | yes | https://mediadive.dsmz.de/medium/1 | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water |
39146 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) | |
116827 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 | |
116827 | CIP Medium 3 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
1694 | positive | growth | 37 | mesophilic |
39146 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 37 | mesophilic |
116827 | positive | growth | 30-41 | |
116827 | no | growth | 5 | psychrophilic |
116827 | no | growth | 10 | psychrophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 116827
- oxygen tolerance: facultative anaerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 98.806 |
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 5-ketogluconate | + | builds acid from | |
68371 | Potassium 2-ketogluconate | + | builds acid from | |
68371 | gluconate | + | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | L-fucose | + | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | turanose | - | builds acid from | 32528 |
68371 | gentiobiose | - | builds acid from | 28066 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | - | builds acid from | 28087 |
68371 | starch | - | builds acid from | 28017 |
68371 | raffinose | - | builds acid from | 16634 |
68371 | melezitose | - | builds acid from | 6731 |
68371 | inulin | - | builds acid from | 15443 |
68371 | trehalose | + | builds acid from | 27082 |
68371 | sucrose | - | builds acid from | 17992 |
68371 | melibiose | - | builds acid from | 28053 |
68371 | lactose | - | builds acid from | 17716 |
68371 | maltose | + | builds acid from | 17306 |
68371 | salicin | - | builds acid from | 17814 |
68371 | esculin | - | builds acid from | 4853 |
68371 | amygdalin | - | builds acid from | 27613 |
68371 | N-acetylglucosamine | - | builds acid from | 59640 |
68371 | methyl alpha-D-glucopyranoside | - | builds acid from | 320061 |
68371 | methyl alpha-D-mannoside | - | builds acid from | 43943 |
68371 | D-sorbitol | + | builds acid from | 17924 |
68371 | D-mannitol | + | builds acid from | 16899 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | + | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-mannose | + | builds acid from | 16024 |
68371 | D-fructose | + | builds acid from | 15824 |
68371 | D-glucose | + | builds acid from | 17634 |
68371 | D-galactose | + | builds acid from | 12936 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | + | builds acid from | 65327 |
68371 | D-ribose | + | builds acid from | 16988 |
68371 | L-arabinose | + | builds acid from | 30849 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | + | builds acid from | 17754 |
68368 | L-arabinose | + | fermentation | 30849 |
68368 | amygdalin | - | fermentation | 27613 |
68368 | melibiose | - | fermentation | 28053 |
68368 | sucrose | - | fermentation | 17992 |
68368 | L-rhamnose | + | fermentation | 62345 |
68368 | sorbitol | - | fermentation | 30911 |
68368 | myo-inositol | - | fermentation | 17268 |
68368 | D-mannitol | - | fermentation | 16899 |
68368 | D-glucose | + | fermentation | 17634 |
68368 | gelatin | - | hydrolysis | 5291 |
68368 | tryptophan | - | energy source | 27897 |
68368 | urea | - | hydrolysis | 16199 |
68368 | citrate | + | assimilation | 16947 |
68368 | ornithine | + | degradation | 18257 |
68368 | lysine | + | degradation | 25094 |
68368 | arginine | + | hydrolysis | 29016 |
116827 | mannitol | - | fermentation | 29864 |
116827 | citrate | + | carbon source | 16947 |
116827 | esculin | - | hydrolysis | 4853 |
116827 | glucose | + | fermentation | 17234 |
116827 | lactose | - | fermentation | 17716 |
116827 | nitrate | + | reduction | 17632 |
116827 | nitrite | - | reduction | 16301 |
116827 | malonate | + | assimilation | 15792 |
116827 | sodium thiosulfate | - | builds gas from | 132112 |
116827 | glucose | + | degradation | 17234 |
68374 | ornithine | + | degradation | 18257 |
68374 | arginine | - | hydrolysis | 29016 |
68374 | lysine | + | degradation | 25094 |
68374 | urea | - | hydrolysis | 16199 |
68374 | L-arabitol | - | builds acid from | 18403 |
68374 | D-galacturonic acid | + | builds acid from | 18024 |
68374 | Potassium 5-ketogluconate | + | builds acid from | |
68374 | D-mannitol | - | builds acid from | 16899 |
68374 | maltose | + | builds acid from | 17306 |
68374 | ribitol | - | builds acid from | 15963 |
68374 | palatinose | - | builds acid from | 18394 |
68374 | malonate | + | assimilation | 15792 |
68374 | tryptophan | - | energy source | 27897 |
68374 | D-glucose | + | builds acid from | 17634 |
68374 | sucrose | - | builds acid from | 17992 |
68374 | L-arabinose | + | builds acid from | 30849 |
68374 | D-arabitol | - | builds acid from | 18333 |
68374 | trehalose | + | builds acid from | 27082 |
68374 | L-rhamnose | + | builds acid from | 62345 |
68374 | myo-inositol | - | builds acid from | 17268 |
68374 | cellobiose | - | builds acid from | 17057 |
68374 | sorbitol | - | builds acid from | 30911 |
antibiotic resistance
- @ref: 116827
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68374 | 35581 | indole | no |
68368 | 15688 | acetoin | no |
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | no |
116827 | 35581 | indole | no |
metabolite tests
@ref | Chebi-ID | metabolite | indole test | voges-proskauer-test | methylred-test |
---|---|---|---|---|---|
68374 | 35581 | indole | - | ||
68368 | 15688 | acetoin | - | ||
68368 | 35581 | indole | - | ||
116827 | 15688 | acetoin | - | ||
116827 | 17234 | glucose | + |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | - | |
68382 | esterase (C 4) | - | |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68374 | L-aspartate arylamidase | - | 3.4.11.21 |
68374 | alpha-maltosidase | - | |
68374 | alpha-galactosidase | - | 3.2.1.22 |
68374 | alpha-glucosidase | - | 3.2.1.20 |
68374 | beta-galactosidase | - | 3.2.1.23 |
68374 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68374 | beta-glucuronidase | - | 3.2.1.31 |
68374 | beta-glucosidase | - | 3.2.1.21 |
68374 | lipase | - | |
68374 | urease | - | 3.5.1.5 |
68374 | lysine decarboxylase | + | 4.1.1.18 |
68374 | arginine dihydrolase | - | 3.5.3.6 |
68374 | ornithine decarboxylase | + | 4.1.1.17 |
68368 | cytochrome oxidase | + | 1.9.3.1 |
68368 | gelatinase | - | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | - | 3.5.1.5 |
68368 | ornithine decarboxylase | + | 4.1.1.17 |
68368 | lysine decarboxylase | + | 4.1.1.18 |
68368 | arginine dihydrolase | + | 3.5.3.6 |
68368 | beta-galactosidase | - | 3.2.1.23 |
116827 | oxidase | - | |
116827 | beta-galactosidase | - | 3.2.1.23 |
116827 | alcohol dehydrogenase | - | 1.1.1.1 |
116827 | gelatinase | - | |
116827 | catalase | + | 1.11.1.6 |
116827 | lysine decarboxylase | + | 4.1.1.18 |
116827 | ornithine decarboxylase | + | 4.1.1.17 |
116827 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
116827 | tryptophan deaminase | - | |
116827 | urease | - | 3.5.1.5 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
116827 | - | + | - | - | - | + | - | - | - | - | + | + | - | - | - | - | - | - | - | - |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1694 | - | + | + | + | + | - | - | - | - | - | - | + | - | - | - | + | - | - | - | + | + |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
116827 | + | - | - | + | + | + | - | +/- | - | + | + | + | + | - | + | - | +/- | + | + | - | - | - | - | +/- | - | - | +/- | + | - | - | - | + | - | - | - | - | - | - | - | - | +/- | - | - | + | +/- | - | + | + | + |
API ID32E
@ref | ODC | ADH Arg | LDC Lys | URE | LARL | GAT | 5KG | LIP | RP | beta GLU | MAN | MAL | ADO | PLE | beta GUR | MNT | IND | beta NAG | beta GAL | GLU | SAC | LARA | DARL | alpha GLU | alpha GAL | TRE | RHA | INO | CEL | SOR | alphaMAL | AspA |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
46149 | + | - | + | - | - | + | + | - | - | - | - | + | - | - | - | + | - | - | - | + | - | + | - | - | - | + | + | - | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
116827 | + | + | + | + | + | - | - | - | - | + | + | - | - | - | - | - | - | + | - | + | + | + | - | + | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | + | + | - | - | - | + | + | - | - | - | + | + | + | + | + | - | + | + | + | - | - | - | - | + | + | - | + | - | - | + | - | - | + | - | - | - | + | + | - | + | + | - | - | + | - | - | + | + | + | - | + | + | - | + | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type |
---|---|
1694 | hindgut of cockroach |
67770 | Hindgut of cockroach |
116827 | Animal, Cockroach, hind-gut |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Arthropoda | #Insecta |
#Host Body-Site | #Gastrointestinal tract |
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
1694 | 1 | Risk group (German classification) |
116827 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Escherichia blattae strain CIP 104942 16S ribosomal RNA gene, partial sequence | EU868610 | 1464 | ena | 630626 |
20218 | Escherichia blattae DSM 4481 16S ribosomal RNA gene, complete sequence | JN175333 | 1525 | ena | 630626 |
1694 | Escherichia blattae strain DSM 4481 16S ribosomal RNA gene, partial sequence | FJ267520 | 1421 | ena | 630626 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Shimwellia blattae DSM 4481 = NBRC 105725 | GCA_000262305 | complete | ncbi | 630626 |
66792 | Shimwellia blattae NCTC12127 | GCA_900636035 | complete | ncbi | 563 |
66792 | Shimwellia blattae DSM 4481 = NBRC 105725 | 630626.3 | complete | patric | 630626 |
66792 | Shimwellia blattae DSM 4481 = NBRC 105725 | 630626.10 | wgs | patric | 630626 |
66792 | Shimwellia blattae strain NCTC12127 | 563.11 | complete | patric | 563 |
66792 | Shimwellia blattae NBRC 105725 | 2531839602 | draft | img | 630626 |
66792 | Shimwellia blattae NCTC12127 | 2836688113 | complete | img | 563 |
66792 | Shimwellia blattae DSM 4481 | 2513020017 | complete | img | 630626 |
67770 | Shimwellia blattae DSM 4481 = NBRC 105725 | GCA_000327265 | contig | ncbi | 630626 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 76.741 | no |
flagellated | no | 93.291 | no |
gram-positive | no | 97.386 | no |
anaerobic | no | 97.577 | no |
aerobic | yes | 82.661 | no |
halophile | no | 83.418 | no |
spore-forming | no | 93.94 | no |
glucose-util | yes | 89.719 | no |
thermophile | no | 99.396 | yes |
glucose-ferment | yes | 88.867 | yes |
External links
@ref: 1694
culture collection no.: DSM 4481, ATCC 29907, CIP 103175, CIP 104942, HAMBI 1692, JCM 1650, LMG 3030, NCTC 12127, CCUG 14803 B, CDC 9005-74, BCRC 15589, CCUG 14803, CGMCC 1.3440, JCM 24308, NBRC 105725, VTT E-042574
straininfo link
- @ref: 74736
- straininfo: 2786
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Genetics | 16088217 | Insights into the genome of the enteric bacterium Escherichia blattae: cobalamin (B12) biosynthesis, B12-dependent reactions, and inactivation of the gene region encoding B12-dependent glycerol dehydratase by a new mu-like prophage. | Andres S, Wiezer A, Bendfeldt H, Waschkowitz T, Toeche-Mittler C, Daniel R | J Mol Microbiol Biotechnol | 10.1159/000085788 | 2004 | Amino Acid Sequence, Bacteriophage mu/*genetics, Base Sequence, Escherichia/genetics/*metabolism, *Genome, Bacterial, Hydro-Lyases/genetics/*metabolism, Molecular Sequence Data, Phylogeny, Prophages/*genetics, Regulon, Vitamin B 12/*biosynthesis | Metabolism |
Phylogeny | 19661513 | Gram-negative bacteria associated with brewery yeasts: reclassification of Obesumbacterium proteus biogroup 2 as Shimwellia pseudoproteus gen. nov., sp. nov., and transfer of Escherichia blattae to Shimwellia blattae comb. nov. | Priest FG, Barker M | Int J Syst Evol Microbiol | 10.1099/ijs.0.013458-0 | 2009 | Bacterial Proteins/genetics, Bacterial Typing Techniques, Beer/*microbiology, DNA, Ribosomal/analysis/genetics, Enterobacteriaceae/classification/genetics/isolation & purification/physiology, Escherichia/classification/genetics/isolation & purification/physiology, Genes, rRNA, Genotype, Gram-Negative Bacteria/*classification/genetics/*isolation & purification/physiology, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity, *Yeasts/growth & development/metabolism | Genetics |
Genetics | 22843577 | Complete genome sequence of the B12-producing Shimwellia blattae strain DSM 4481, isolated from a cockroach. | Brzuszkiewicz E, Waschkowitz T, Wiezer A, Daniel R | J Bacteriol | 10.1128/JB.00829-12 | 2012 | Animals, Chromosomes, Bacterial, Cockroaches/microbiology, DNA, Bacterial/*chemistry/*genetics, Escherichia/*genetics/isolation & purification/metabolism, *Genome, Bacterial, Molecular Sequence Data, *Sequence Analysis, DNA, Vitamin B 12/biosynthesis | Transcriptome |
Genetics | 30927646 | Similarly in depression, nuances of gut microbiota: Evidences from a shotgun metagenomics sequencing study on major depressive disorder versus bipolar disorder with current major depressive episode patients. | Rong H, Xie XH, Zhao J, Lai WT, Wang MB, Xu D, Liu YH, Guo YY, Xu SX, Deng WF, Yang QF, Xiao L, Zhang YL, He FS, Wang S, Liu TB | J Psychiatr Res | 10.1016/j.jpsychires.2019.03.017 | 2019 | Adult, Bipolar Disorder/*microbiology, Depressive Disorder, Major/*microbiology, Feces/microbiology, Female, Gastrointestinal Microbiome/*physiology, Humans, Male, Metagenomics/*methods/statistics & numerical data | Pathogenicity |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
1694 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4481) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-4481 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
39146 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/16906 | ||||
46149 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 14803 B) | https://www.ccug.se/strain?id=14803 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68368 | Automatically annotated from API 20E | |||||
68371 | Automatically annotated from API 50CH acid | |||||
68374 | Automatically annotated from API ID32E | |||||
68382 | Automatically annotated from API zym | |||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
74736 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID2786.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
116827 | Curators of the CIP | Collection of Institut Pasteur (CIP 104942) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20104942 |