Strain identifier

BacDive ID: 5241

Type strain: Yes

Species: Cronobacter dublinensis subsp. lausannensis

Strain Designation: E515

Strain history: LMG 23824 <-- A. Lehner E515 <-- C. Iversen.

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General

@ref: 7667

BacDive-ID: 5241

DSM-Number: 18706

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic

description: Cronobacter dublinensis subsp. lausannensis E515 is an aerobe, mesophilic bacterium that was isolated from water fountain basin.

NCBI tax id

NCBI tax idMatching level
1159560strain
413500subspecies

strain history

@refhistory
7667<- A. Lehner; E515 <- C. Iversen, Nestec S. A.
67770LMG 23824 <-- A. Lehner E515 <-- C. Iversen.

doi: 10.13145/bacdive5241.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Cronobacter
  • species: Cronobacter dublinensis subsp. lausannensis
  • full scientific name: Cronobacter dublinensis subsp. lausannensis Iversen et al. 2008

@ref: 7667

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Cronobacter

species: Cronobacter dublinensis subsp. lausannensis

full scientific name: Cronobacter dublinensis subsp. lausannensis Iversen et al. 2008

strain designation: E515

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 7667
  • name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/535
  • composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
7667positivegrowth37mesophilic
61595positivegrowth30mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 61595
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837418257ornithine+degradation
6837429016arginine+hydrolysis
6837425094lysine-degradation
6837416199urea-hydrolysis
6837418403L-arabitol-builds acid from
6837418024D-galacturonic acid+builds acid from
68374Potassium 5-ketogluconate-builds acid from
6837416899D-mannitol+builds acid from
6837417306maltose-builds acid from
6837415963ribitol-builds acid from
6837418394palatinose-builds acid from
6837415792malonate-assimilation
6837427897tryptophan+energy source
6837417634D-glucose+builds acid from
6837417992sucrose+builds acid from
6837430849L-arabinose-builds acid from
6837418333D-arabitol-builds acid from
6837427082trehalose+builds acid from
6837462345L-rhamnose+builds acid from
6837417268myo-inositol-builds acid from
6837417057cellobiose-builds acid from
6837430911sorbitol-builds acid from

metabolite production

  • @ref: 68374
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 68374
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

@refvalueactivityec
68374L-aspartate arylamidase-3.4.11.21
68374alpha-maltosidase+
68374alpha-galactosidase+3.2.1.22
68374alpha-glucosidase+3.2.1.20
68374beta-galactosidase+3.2.1.23
68374N-acetyl-beta-glucosaminidase-3.2.1.52
68374beta-glucuronidase-3.2.1.31
68374beta-glucosidase+3.2.1.21
68374lipase+
68374urease-3.5.1.5
68374lysine decarboxylase-4.1.1.18
68374arginine dihydrolase+3.5.3.6
68374ornithine decarboxylase+4.1.1.17

API ID32E

@refODCADH ArgLDC LysURELARLGAT5KGLIPRPbeta GLUMANMALADOPLEbeta GURMNTINDbeta NAGbeta GALGLUSACLARADARLalpha GLUalpha GALTRERHAINOCELSORalphaMALAspA
61595++---+-+-++-----+-+++--++++---+-

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentsampling date
7667water fountain basinSwitzerlandCHEEurope
61595Water fountain,basinSwitzerlandCHEEurope2004
67770Basin of a water fountain

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic

taxonmaps

  • @ref: 69479
  • File name: preview.99_317.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_241;98_270;99_317&stattab=map
  • Last taxonomy: Cronobacter
  • 16S sequence: EF059841
  • Sequence Identity:
  • Total samples: 26535
  • soil counts: 1166
  • aquatic counts: 2553
  • animal counts: 20787
  • plant counts: 2029

Safety information

risk assessment

  • @ref: 7667
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Cronobacter dublinensis subsp. lausannensis LMG 23824 strain E515 16S ribosomal RNA gene, partial sequence
  • accession: EF059841
  • length: 1417
  • database: ena
  • NCBI tax ID: 1159560

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Cronobacter dublinensis subsp. lausannensis LMG 238241159560.3wgspatric1159560
66792Cronobacter dublinensis lausannensis LMG 238242548876991draftimg1159560
67770Cronobacter dublinensis subsp. lausannensis LMG 23824GCA_000409365contigncbi1159560

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes92.514no
gram-positiveno97.776no
anaerobicno96.456yes
aerobicyes82.984yes
halophileno76.264no
spore-formingno93.83no
flagellatedno77.094no
thermophileno99.181yes
glucose-utilyes95.703no
glucose-fermentyes92.94no

External links

@ref: 7667

culture collection no.: CCUG 58095, DSM 18706, LMG 23824, JCM 16469

straininfo link

  • @ref: 74732
  • straininfo: 354306

literature

  • topic: Phylogeny
  • Pubmed-ID: 18523192
  • title: Cronobacter gen. nov., a new genus to accommodate the biogroups of Enterobacter sakazakii, and proposal of Cronobacter sakazakii gen. nov., comb. nov., Cronobacter malonaticus sp. nov., Cronobacter turicensis sp. nov., Cronobacter muytjensii sp. nov., Cronobacter dublinensis sp. nov., Cronobacter genomospecies 1, and of three subspecies, Cronobacter dublinensis subsp. dublinensis subsp. nov., Cronobacter dublinensis subsp. lausannensis subsp. nov. and Cronobacter dublinensis subsp. lactaridi subsp. nov.
  • authors: Iversen C, Mullane N, McCardell B, Tall BD, Lehner A, Fanning S, Stephan R, Joosten H
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.65577-0
  • year: 2008
  • mesh: Bacterial Typing Techniques, Cronobacter sakazakii/*classification/genetics/metabolism/physiology, DNA, Bacterial/analysis, Enterobacteriaceae/*classification/genetics/metabolism/physiology, Genes, rRNA, Malonates/metabolism, Microarray Analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, RNA, Ribosomal, 16S/genetics, Reagent Kits, Diagnostic, Sequence Analysis, DNA, Species Specificity
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7667Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18706)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18706
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
61595Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 58095)https://www.ccug.se/strain?id=58095
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68374Automatically annotated from API ID32E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
74732Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID354306.1StrainInfo: A central database for resolving microbial strain identifiers