Strain identifier
BacDive ID: 5241
Type strain:
Species: Cronobacter dublinensis subsp. lausannensis
Strain Designation: E515
Strain history: LMG 23824 <-- A. Lehner E515 <-- C. Iversen.
NCBI tax ID(s): 1159560 (strain), 413500 (subspecies)
General
@ref: 7667
BacDive-ID: 5241
DSM-Number: 18706
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic
description: Cronobacter dublinensis subsp. lausannensis E515 is an aerobe, mesophilic bacterium that was isolated from water fountain basin.
NCBI tax id
NCBI tax id | Matching level |
---|---|
1159560 | strain |
413500 | subspecies |
strain history
@ref | history |
---|---|
7667 | <- A. Lehner; E515 <- C. Iversen, Nestec S. A. |
67770 | LMG 23824 <-- A. Lehner E515 <-- C. Iversen. |
doi: 10.13145/bacdive5241.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Cronobacter
- species: Cronobacter dublinensis subsp. lausannensis
- full scientific name: Cronobacter dublinensis subsp. lausannensis Iversen et al. 2008
@ref: 7667
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Enterobacteriaceae
genus: Cronobacter
species: Cronobacter dublinensis subsp. lausannensis
full scientific name: Cronobacter dublinensis subsp. lausannensis Iversen et al. 2008
strain designation: E515
type strain: yes
Culture and growth conditions
culture medium
- @ref: 7667
- name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535
- composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
7667 | positive | growth | 37 | mesophilic |
61595 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 61595
- oxygen tolerance: aerobe
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68374 | 18257 | ornithine | + | degradation |
68374 | 29016 | arginine | + | hydrolysis |
68374 | 25094 | lysine | - | degradation |
68374 | 16199 | urea | - | hydrolysis |
68374 | 18403 | L-arabitol | - | builds acid from |
68374 | 18024 | D-galacturonic acid | + | builds acid from |
68374 | Potassium 5-ketogluconate | - | builds acid from | |
68374 | 16899 | D-mannitol | + | builds acid from |
68374 | 17306 | maltose | - | builds acid from |
68374 | 15963 | ribitol | - | builds acid from |
68374 | 18394 | palatinose | - | builds acid from |
68374 | 15792 | malonate | - | assimilation |
68374 | 27897 | tryptophan | + | energy source |
68374 | 17634 | D-glucose | + | builds acid from |
68374 | 17992 | sucrose | + | builds acid from |
68374 | 30849 | L-arabinose | - | builds acid from |
68374 | 18333 | D-arabitol | - | builds acid from |
68374 | 27082 | trehalose | + | builds acid from |
68374 | 62345 | L-rhamnose | + | builds acid from |
68374 | 17268 | myo-inositol | - | builds acid from |
68374 | 17057 | cellobiose | - | builds acid from |
68374 | 30911 | sorbitol | - | builds acid from |
metabolite production
- @ref: 68374
- Chebi-ID: 35581
- metabolite: indole
- production: yes
metabolite tests
- @ref: 68374
- Chebi-ID: 35581
- metabolite: indole
- indole test: +
enzymes
@ref | value | activity | ec |
---|---|---|---|
68374 | L-aspartate arylamidase | - | 3.4.11.21 |
68374 | alpha-maltosidase | + | |
68374 | alpha-galactosidase | + | 3.2.1.22 |
68374 | alpha-glucosidase | + | 3.2.1.20 |
68374 | beta-galactosidase | + | 3.2.1.23 |
68374 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68374 | beta-glucuronidase | - | 3.2.1.31 |
68374 | beta-glucosidase | + | 3.2.1.21 |
68374 | lipase | + | |
68374 | urease | - | 3.5.1.5 |
68374 | lysine decarboxylase | - | 4.1.1.18 |
68374 | arginine dihydrolase | + | 3.5.3.6 |
68374 | ornithine decarboxylase | + | 4.1.1.17 |
API ID32E
@ref | ODC | ADH Arg | LDC Lys | URE | LARL | GAT | 5KG | LIP | RP | beta GLU | MAN | MAL | ADO | PLE | beta GUR | MNT | IND | beta NAG | beta GAL | GLU | SAC | LARA | DARL | alpha GLU | alpha GAL | TRE | RHA | INO | CEL | SOR | alphaMAL | AspA |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
61595 | + | + | - | - | - | + | - | + | - | + | + | - | - | - | - | - | + | - | + | + | + | - | - | + | + | + | + | - | - | - | + | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent | sampling date |
---|---|---|---|---|---|
7667 | water fountain basin | Switzerland | CHE | Europe | |
61595 | Water fountain,basin | Switzerland | CHE | Europe | 2004 |
67770 | Basin of a water fountain |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
taxonmaps
- @ref: 69479
- File name: preview.99_317.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_241;98_270;99_317&stattab=map
- Last taxonomy: Cronobacter
- 16S sequence: EF059841
- Sequence Identity:
- Total samples: 26535
- soil counts: 1166
- aquatic counts: 2553
- animal counts: 20787
- plant counts: 2029
Safety information
risk assessment
- @ref: 7667
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20218
- description: Cronobacter dublinensis subsp. lausannensis LMG 23824 strain E515 16S ribosomal RNA gene, partial sequence
- accession: EF059841
- length: 1417
- database: ena
- NCBI tax ID: 1159560
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Cronobacter dublinensis subsp. lausannensis LMG 23824 | 1159560.3 | wgs | patric | 1159560 |
66792 | Cronobacter dublinensis lausannensis LMG 23824 | 2548876991 | draft | img | 1159560 |
67770 | Cronobacter dublinensis subsp. lausannensis LMG 23824 | GCA_000409365 | contig | ncbi | 1159560 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 92.514 | no |
gram-positive | no | 97.776 | no |
anaerobic | no | 96.456 | yes |
aerobic | yes | 82.984 | yes |
halophile | no | 76.264 | no |
spore-forming | no | 93.83 | no |
flagellated | no | 77.094 | no |
thermophile | no | 99.181 | yes |
glucose-util | yes | 95.703 | no |
glucose-ferment | yes | 92.94 | no |
External links
@ref: 7667
culture collection no.: CCUG 58095, DSM 18706, LMG 23824, JCM 16469
straininfo link
- @ref: 74732
- straininfo: 354306
literature
- topic: Phylogeny
- Pubmed-ID: 18523192
- title: Cronobacter gen. nov., a new genus to accommodate the biogroups of Enterobacter sakazakii, and proposal of Cronobacter sakazakii gen. nov., comb. nov., Cronobacter malonaticus sp. nov., Cronobacter turicensis sp. nov., Cronobacter muytjensii sp. nov., Cronobacter dublinensis sp. nov., Cronobacter genomospecies 1, and of three subspecies, Cronobacter dublinensis subsp. dublinensis subsp. nov., Cronobacter dublinensis subsp. lausannensis subsp. nov. and Cronobacter dublinensis subsp. lactaridi subsp. nov.
- authors: Iversen C, Mullane N, McCardell B, Tall BD, Lehner A, Fanning S, Stephan R, Joosten H
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.65577-0
- year: 2008
- mesh: Bacterial Typing Techniques, Cronobacter sakazakii/*classification/genetics/metabolism/physiology, DNA, Bacterial/analysis, Enterobacteriaceae/*classification/genetics/metabolism/physiology, Genes, rRNA, Malonates/metabolism, Microarray Analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, RNA, Ribosomal, 16S/genetics, Reagent Kits, Diagnostic, Sequence Analysis, DNA, Species Specificity
- topic2: Metabolism
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
7667 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18706) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18706 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
61595 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 58095) | https://www.ccug.se/strain?id=58095 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68374 | Automatically annotated from API ID32E | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
74732 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID354306.1 | StrainInfo: A central database for resolving microbial strain identifiers |