Strain identifier

BacDive ID: 5236

Type strain: Yes

Species: Cronobacter sakazakii

Strain history: CIP <- 1988, ATCC <- J.J. Farmer, CDC: strain 4562-70 Ct2 (MR-), Enterobacter flavus <- Tennessee State Hlth. Dept., USA

NCBI tax ID(s): 28141 (species)

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General

@ref: 1698

BacDive-ID: 5236

DSM-Number: 4485

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Cronobacter sakazakii DSM 4485 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from child's throat.

NCBI tax id

  • NCBI tax id: 28141
  • Matching level: species

strain history

@refhistory
1698<- ATCC <- J.J. Farmer; CDC 4562-70; Ct2 (MR-)(Enterobacter flavus) <- Tennessee State Health Dep. <- Primary Hospital Lab
67770Y. Kosako 216 <-- R. Sakazaki 216 <-- ATCC 29544 <-- J. J. Farmer CDC 4562-70 (Ct2(MR-)) <-- Tennessee State Health Dept., USA <-- Primary Hosp. Lab..
122353CIP <- 1988, ATCC <- J.J. Farmer, CDC: strain 4562-70 Ct2 (MR-), Enterobacter flavus <- Tennessee State Hlth. Dept., USA

doi: 10.13145/bacdive5236.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Cronobacter
  • species: Cronobacter sakazakii
  • full scientific name: Cronobacter sakazakii (Farmer et al. 1980) Iversen et al. 2008

  • synonyms

    @refsynonym
    20215Enterobacter sakazakii
    20215Cronobacter sakazakii

@ref: 1698

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Cronobacter

species: Cronobacter sakazakii subsp. sakazakii

full scientific name: Cronobacter sakazakii subsp. sakazakii (Farmer et al. 1980) Iversen et al. 2007

type strain: yes

Morphology

cell morphology

  • @ref: 122353
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1698NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
41818MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
122353CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3
122353CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
1698positivegrowth30mesophilic
41818positivegrowth30mesophilic
46134positivegrowth30mesophilic
67770positivegrowth37mesophilic
122353positivegrowth30-41
122353nogrowth5psychrophilic
122353nogrowth10psychrophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
46134aerobe
122353facultative anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose+fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol+fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine-degradation
6836829016arginine+hydrolysis
12235329864mannitol+fermentation
12235316947citrate+carbon source
12235317234glucose+fermentation
12235317716lactose-fermentation
12235317632nitrate+reduction
12235316301nitrite-reduction
12235315792malonate+assimilation
122353132112sodium thiosulfate-builds gas from

antibiotic resistance

  • @ref: 122353
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno
12235335581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole testmethylred-test
6836815688acetoin+
6836835581indole-
12235315688acetoin-
12235317234glucose-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase+3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68368cytochrome oxidase-1.9.3.1
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23
122353oxidase-
122353beta-galactosidase+3.2.1.23
122353alcohol dehydrogenase+1.1.1.1
122353gelatinase-
122353catalase+1.11.1.6
122353lysine decarboxylase-4.1.1.18
122353ornithine decarboxylase-4.1.1.17
122353phenylalanine ammonia-lyase-4.3.1.24
122353tryptophan deaminase-
122353urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122353-+++-+--+-++++-+++--

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
1698++-++----+++++-+++++-
1698++-++----+-+++-+++++-
1698++-++----+-+++-+++++-
1698++-++----+-+++-+++++-
1698++-++----+-+++-+++++-
1698++-++----+-+++-+++++-

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
122353--+-+-------+++----+++++-------++--------+-------++--++++---+-----------++-+---++-----+--++++++----

Isolation, sampling and environmental information

isolation

@refsample typeisolation date
1698child's throat
46134Human throat,child
67770Child's throat
122353Human, Child, throat1978

isolation source categories

Cat1Cat2Cat3
#Infection#Patient
#Host Body-Site#Oral cavity and airways#Throat
#Host#Human#Child

taxonmaps

  • @ref: 69479
  • File name: preview.99_338.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_241;98_270;99_338&stattab=map
  • Last taxonomy: Cronobacter
  • 16S sequence: JX133166
  • Sequence Identity:
  • Total samples: 1704
  • soil counts: 36
  • aquatic counts: 140
  • animal counts: 1436
  • plant counts: 92

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
16982Risk group (German classification)
1223532Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Enterobacter sakazakii strain ATCC 29544 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequenceAY702093694ena28141
20218Enterobacter sakazakii strain ATCC 29544 16S ribosomal RNA gene, partial sequence; tRNA-Ile and tRNA-Ala genes, complete sequence; and 23S ribosomal RNA gene, partial sequenceAY748356683ena28141
20218Enterobacter sakazakii strain ATCC 29544 16S ribosomal RNA gene, partial sequence; tRNA-Glu gene, complete sequence; and 23S ribosomal RNA gene, partial sequenceAY748357608ena28141
20218Cronobacter sakazakii strain E601 16S ribosomal RNA gene, partial sequenceEF0598431424ena28141
20218Enterobacter sakazakii strain ATCC 29544 16S ribosomal RNA gene, partial sequenceEF0883791493ena28141
20218Cronobacter sakazakii strain ATCC 29544 16S ribosomal RNA gene, partial sequenceHQ8802881425ena28141
20218Cronobacter sakazakii strain ATCC 29544 16S ribosomal RNA gene, partial sequenceJN654454797ena28141
20218Cronobacter sakazakii strain ATCC 29544 16S ribosomal RNA gene, partial sequenceJX1331661438ena28141
20218Enterobacter sakazakii strain z858 16S ribosomal RNA gene, partial sequenceAY7529361451ena28141
20218Enterobacter sakazakii gene for 16S ribosomal RNA, partial sequenceAB0047461449ena28141
20218Cronobacter sakazakii gene for 16S rRNA, partial sequence, strain: JCM 1233AB6261261464ena28141
20218Cronobacter sakazakii gene for 16S rRNA, partial sequence, strain: NBRC 102416AB6817721467ena28141
20218Enterobacter sakazakii strain NCTC 11467 16S ribosomal RNA gene, partial sequenceAY579145528ena28141

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Cronobacter sakazakii ATCC 29544GCA_000982825completencbi28141
66792Cronobacter sakazakii NBRC 1024161218104.3wgspatric1218104
66792Cronobacter sakazakii strain ATCC 2954428141.119wgspatric28141
66792Cronobacter sakazakii strain ATCC 2954428141.369plasmidpatric28141
66792Cronobacter sakazakii strain ATCC 2954428141.367plasmidpatric28141
66792Cronobacter sakazakii strain ATCC 2954428141.368plasmidpatric28141
66792Cronobacter sakazakii strain ATCC 2954428141.40completepatric28141
66792Cronobacter sakazakii strain ATCC 2954428141.373plasmidpatric28141
66792Cronobacter sakazakii strain FDAARGOS_92728141.866wgspatric28141
66792Cronobacter sakazakii strain NCTC1146728141.659wgspatric28141
66792Cronobacter sakazakii ATCC 295442627854230completeimg28141
66792Cronobacter sakazakii NBRC 1024162576861057draftimg1218104
66792Cronobacter sakazakii ATCC 295442876320891draftimg28141
67770Cronobacter sakazakii NBRC 102416GCA_000684935contigncbi1218104
67770Cronobacter sakazakii ATCC 29544GCA_001971035scaffoldncbi28141
67770Cronobacter sakazakii NCTC11467GCA_900447395contigncbi28141

GC content

  • @ref: 67770
  • GC-content: 57
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes91.286no
flagellatedno78.618no
gram-positiveno97.905no
anaerobicno97.217yes
aerobicyes78.777no
halophileno75.001no
spore-formingno93.419no
thermophileno99.118no
glucose-utilyes95.713no
glucose-fermentyes91.134no

External links

@ref: 1698

culture collection no.: DSM 4485, ATCC 29544, NCTC 11467, WDCM 00214, CCUG 14558, CECT 858, CDC 4562-70, JCM 1233, BCRC 13988, CGMCC 1.6765, CIP 103183, HUT 8109, IAM 12660, KCTC 2949, LMG 5740, NBRC 102416, NBRC 105698, VTT E-991283

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Pathogenicity16355841Adhesion of selected Bifidobacterium strains to human intestinal mucus and the role of adhesion in enteropathogen exclusion.Collado MC, Gueimonde M, Hernandez M, Sanz Y, Salminen SJ Food Prot10.4315/0362-028x-68.12.26722005Analysis of Variance, *Antibiosis, Bacterial Adhesion/*physiology, Bifidobacterium/*physiology, Enterobacteriaceae/*growth & development, Humans, Intestinal Mucosa/*microbiology, Probiotics, Species SpecificityPhylogeny
Biotechnology16924934Exopolysaccharides produced by probiotic strains modify the adhesion of probiotics and enteropathogens to human intestinal mucus.Ruas-Madiedo P, Gueimonde M, Margolles A, de los Reyes-Gavilan CG, Salminen SJ Food Prot10.4315/0362-028x-69.8.20112006Antibiosis, Bacterial Adhesion/*physiology, Bifidobacterium/*physiology, Enterobacteriaceae/*growth & development, Food Microbiology, Humans, Intestinal Mucosa/*microbiology, Lactobacillus rhamnosus/*physiology, Polysaccharides, Bacterial/*physiology, *Probiotics, Species SpecificityPathogenicity
Phylogeny17289198Characterization of the gene encoding the 16S rRNA of Enterobacter sakazakii and development of a species-specific PCR method.Hassan AA, Akineden O, Kress C, Estuningsih S, Schneider E, Usleber EInt J Food Microbiol10.1016/j.ijfoodmicro.2006.12.0112007Base Sequence, Consumer Product Safety, Cronobacter sakazakii/*genetics/*isolation & purification, DNA, Bacterial/chemistry, Food Contamination/*analysis, *Genetic Variation, Humans, Infant, Infant Formula, Infant, Newborn, Polymerase Chain Reaction/*methods, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, Species SpecificityPathogenicity
Phylogeny18523192Cronobacter gen. nov., a new genus to accommodate the biogroups of Enterobacter sakazakii, and proposal of Cronobacter sakazakii gen. nov., comb. nov., Cronobacter malonaticus sp. nov., Cronobacter turicensis sp. nov., Cronobacter muytjensii sp. nov., Cronobacter dublinensis sp. nov., Cronobacter genomospecies 1, and of three subspecies, Cronobacter dublinensis subsp. dublinensis subsp. nov., Cronobacter dublinensis subsp. lausannensis subsp. nov. and Cronobacter dublinensis subsp. lactaridi subsp. nov.Iversen C, Mullane N, McCardell B, Tall BD, Lehner A, Fanning S, Stephan R, Joosten HInt J Syst Evol Microbiol10.1099/ijs.0.65577-02008Bacterial Typing Techniques, Cronobacter sakazakii/*classification/genetics/metabolism/physiology, DNA, Bacterial/analysis, Enterobacteriaceae/*classification/genetics/metabolism/physiology, Genes, rRNA, Malonates/metabolism, Microarray Analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, RNA, Ribosomal, 16S/genetics, Reagent Kits, Diagnostic, Sequence Analysis, DNA, Species SpecificityMetabolism
Phylogeny19427046Analysis of a consensus fragment in ERIC-PCR fingerprinting of Enterobacter sakazakii.Ye Y, Wu Q, Yao L, Dong X, Wu K, Zhang JInt J Food Microbiol10.1016/j.ijfoodmicro.2009.03.0182009Cronobacter sakazakii/*classification/*genetics, DNA Fingerprinting, DNA, Bacterial/*analysis, Food Contamination/analysis/prevention & control, *Genetic Variation, Immunoblotting, *Phylogeny, Polymerase Chain Reaction, Sequence Homology, Nucleic Acid
Phylogeny19623963[Development of a loop-mediated isothermal amplification assay for rapid detection of Enterobacter sakazakii in powdered infant formula].Hu L, Zhang W, Zhang X, Yuan Y, Zhang Y, Zhang H, Ma X, Su XWei Sheng Wu Xue Bao2009Cronobacter sakazakii/classification/*genetics/*isolation & purification, Humans, Infant, *Infant Formula, Nucleic Acid Amplification Techniques/*methods, Polymerase Chain Reaction, Reproducibility of ResultsPathogenicity
Biotechnology19625097The effect of temperature and length of heat shock treatment on the thermal tolerance and cell leakage of Cronobacter sakazakii BCRC 13988.Chang CH, Chiang ML, Chou CCInt J Food Microbiol10.1016/j.ijfoodmicro.2009.06.0052009Adaptation, Physiological, Colony Count, Microbial, Consumer Product Safety, Cronobacter sakazakii/*growth & development/physiology/*ultrastructure, Food Contamination/analysis, Food Handling/*methods, Food Microbiology, *Hot Temperature, Humans, Infant, Infant Food/*microbiology, Infant Formula, Infant, Newborn, *Microbial Viability, Time FactorsStress
Biotechnology19821740The effect of heat shock on the response of Cronobacter sakazakii to subsequent lethal stresses.Chang CH, Chiang ML, Chou CCFoodborne Pathog Dis10.1089/fpd.2009.03452010*Adaptation, Physiological, Colony Count, Microbial, Cronobacter sakazakii/growth & development/*physiology, Desiccation, Ethanol/toxicity, Food Microbiology, *Heat-Shock Response, Hydrogen-Ion Concentration, Microbial Viability/drug effects, Osmotic Pressure, *Stress, Physiological, Temperature, Time FactorsStress
Pathogenicity20202345Synergistic effects of ethanol and UV radiation to reduce levels of selected foodborne pathogenic bacteria.Ha JH, Ha SDJ Food Prot10.4315/0362-028x-73.3.5562010Bacteria/*drug effects/*radiation effects, Colony Count, Microbial, Consumer Product Safety, Disinfection/*methods, Dose-Response Relationship, Drug, Dose-Response Relationship, Radiation, Ethanol/*pharmacology, Food Contamination/prevention & control, *Food Irradiation, Food Microbiology, Humans, Ultraviolet RaysBiotechnology
Biotechnology20501034Inactivation rates of Cronobacter spp. and selected other bacterial strains in powdered infant formulae stored at different temperatures.Kandhai MC, Reij MW, van Schothorst M, Gorris LG, Zwietering MHJ Food Prot10.4315/0362-028x-73.5.8392010Colony Count, Microbial, Consumer Product Safety, Cronobacter sakazakii/*growth & development, Food Contamination/*analysis, Food Handling/*methods, Food Microbiology, Food Preservation/*methods, Humans, Infant, Infant Food/*microbiology, Infant Formula, Infant, Newborn, Risk Assessment, TemperaturePathogenicity
Genetics20719304Structure of the O-polysaccharide of Cronobacter sakazakii O1 containing 3-(N-acetyl-l-alanyl)amino-3,6-dideoxy-d-glucose.Arbatsky NP, Wang M, Shashkov AS, Feng L, Knirel YA, Wang LCarbohydr Res10.1016/j.carres.2010.07.0132010Acetylglucosamine/analogs & derivatives/chemistry, Carbohydrate Sequence, Cronobacter sakazakii/*chemistry, Lipopolysaccharides/chemistry/isolation & purification, Molecular Sequence Data, Nuclear Magnetic Resonance, Biomolecular, O Antigens/*chemistry, Oligosaccharides/chemistryEnzymology
Biotechnology20724016Factors influencing the accuracy of the plating method used to enumerate low numbers of viable micro-organisms in food.Jongenburger I, Reij MW, Boer EP, Gorris LG, Zwietering MHInt J Food Microbiol10.1016/j.ijfoodmicro.2010.07.0252010Animals, Colony Count, Microbial/methods, Cronobacter sakazakii/*growth & development, Food Microbiology/*methods, Milk/*microbiology, Monte Carlo Method, Poisson Distribution, Powders, Reproducibility of Results
Stress21074886Sub-lethal heat treatment affects the tolerance of Cronobacter sakazakii BCRC 13988 to various organic acids, simulated gastric juice and bile solution.Hsiao WL, Ho WL, Chou CCInt J Food Microbiol10.1016/j.ijfoodmicro.2010.10.0062010Bile Acids and Salts/toxicity, Carboxylic Acids/toxicity, Cronobacter sakazakii/*physiology, Gastric Juice, Heat-Shock Response, *Hot Temperature, Microbial Viability, Solutions
Biotechnology21111503Inactivation of Cronobacter sakazakii by ultrasonic waves under pressure in buffer and foods.Arroyo C, Cebrian G, Pagan R, Condon SInt J Food Microbiol10.1016/j.ijfoodmicro.2010.10.0332010Buffers, Cronobacter sakazakii/growth & development/*physiology, *Food Microbiology/methods, Food Technology/*methods, Hydrogen-Ion Concentration, *Microbial Viability, *Pressure, Temperature, Time Factors, *Ultrasonics, Water/chemistry
Pathogenicity21204702Synergistic effects of sodium hypochlorite and ultraviolet radiation in reducing the levels of selected foodborne pathogenic bacteria.Ha JH, Ha SDFoodborne Pathog Dis10.1089/fpd.2010.07612011Bacillus cereus/drug effects/growth & development/radiation effects, Bacteria/*drug effects/growth & development/*radiation effects, Bacterial Load, Consumer Product Safety, Disinfectants/*pharmacology, Disinfection/methods, Enterobacteriaceae/drug effects/growth & development/radiation effects, Food Microbiology, Foodborne Diseases/microbiology/*prevention & control, Sodium Hypochlorite/*pharmacology, Staphylococcus aureus/drug effects/growth & development/radiation effects, *Ultraviolet RaysBiotechnology
Pathogenicity21255207Survival characteristics of environmental and clinically derived strains of Cronobacter sakazakii in infant milk formula (IMF) and ingredients.Walsh D, Molloy C, Iversen C, Carroll J, Cagney C, Fanning S, Duffy GJ Appl Microbiol10.1111/j.1365-2672.2010.04921.x2011Animals, Colony Count, Microbial, Cronobacter sakazakii/drug effects/*physiology, Desiccation, Enterobacteriaceae Infections/microbiology, Environmental Microbiology, *Food Microbiology, Hot Temperature, Humans, Infant, *Infant Formula/chemistry, Inulin/pharmacology, Lecithins/pharmacology, Stress, Physiological, Time FactorsBiotechnology
Enzymology21567153Analysis of the DNA region mediating increased thermotolerance at 58 degrees C in Cronobacter sp. and other enterobacterial strains.Gajdosova J, Benedikovicova K, Kamodyova N, Tothova L, Kaclikova E, Stuchlik S, Turna J, Drahovska HAntonie Van Leeuwenhoek10.1007/s10482-011-9585-y2011Bacterial Proteins/genetics, Cloning, Molecular, DNA, Bacterial/*genetics, Dairy Products/analysis/*microbiology, Enterobacteriaceae/*genetics/physiology, Escherichia coli/genetics, Food Microbiology, Gene Expression Regulation, Bacterial, Genes, Bacterial, *Hot Temperature, Humans, Infant, Infant Formula, Multigene Family, Open Reading Frames, Reverse Transcriptase Polymerase Chain Reaction, Sequence Alignment, Sequence Analysis, DNA, Stress, Physiological, Transcription, GeneticBiotechnology
Pathogenicity21902917In vitro evaluation of Lactobacillus gasseri strains of infant origin on adhesion and aggregation of specific pathogens.Ferreira CL, Grzeskowiak L, Collado MC, Salminen SJ Food Prot10.4315/0362-028X.JFP-11-0742011Antibiosis, *Bacterial Adhesion/physiology, Clostridioides difficile/growth & development, Clostridium/*growth & development, Feces/microbiology, Humans, Infant, Newborn, Intestinal Mucosa/*microbiology, Lactobacillus/*physiology, Microbial Viability, Models, Biological, *Probiotics
Stress22221523Development of resistance in Cronobacter sakazakii ATCC 29544 to thermal and nonthermal processes after exposure to stressing environmental conditions.Arroyo C, Cebrian G, Condon S, Pagan RJ Appl Microbiol10.1111/j.1365-2672.2011.05218.x2012Cronobacter sakazakii/growth & development/*physiology, Electricity, Food Handling/*methods, Food Microbiology, Heat-Shock Response, *Hot Temperature, Hydrogen-Ion Concentration, Microbial Viability, Osmotic Pressure, Pressure, Sonication, *Stress, Physiological, Ultraviolet RaysBiotechnology
Metabolism22770741Possible roles of LysR-type transcriptional regulator (LTTR) homolog as a global regulator in Cronobacter sakazakii ATCC 29544.Choi Y, Kim KP, Kim K, Choi J, Shin H, Kang DH, Ryu SInt J Med Microbiol10.1016/j.ijmm.2012.06.0012012Animals, Bacterial Adhesion, Bacterial Proteins/genetics/*metabolism, Biofilms, Caco-2 Cells, Computational Biology/methods, Cronobacter sakazakii/*genetics/metabolism/pathogenicity, Enterobacteriaceae Infections/microbiology, *Gene Expression Regulation, Bacterial, Genes, Bacterial, *Genes, Regulator, Genetic Complementation Test, Humans, Interleukin-8/metabolism, Oxidative Stress, Phenotype, Rats, Rats, Sprague-Dawley, Sequence Deletion, Transcription Factors/genetics/*metabolismPathogenicity
Stress23441915Effect of ethanol shock pretreatment on the tolerance of Cronobacter sakazakii BCRC 13988 exposed to subsequent lethal stresses.Huang YT, Cheng KC, Yu RC, Chou CCFoodborne Pathog Dis10.1089/fpd.2012.12912013Anti-Bacterial Agents/*pharmacology, Cold Temperature, Colony Count, Microbial, Cronobacter sakazakii/*drug effects/growth & development, Drug Resistance, Bacterial, Ethanol/*pharmacology, Food Contamination, Food Microbiology, Hot Temperature, Hydrogen-Ion Concentration, Microbial Viability/drug effects, *Stress, PhysiologicalPathogenicity
Phylogeny23574407Evaluation and implementation of a membrane filter method for Cronobacter detection in drinking water.Liu H, Yang Y, Cui J, Liu L, Liu H, Hu G, Shi Y, Li JFEMS Microbiol Lett10.1111/1574-6968.121552013Cronobacter/classification/genetics/*isolation & purification, Drinking Water/*microbiology, Genes, Bacterial, *Micropore Filters, Peptide Elongation Factor G/genetics, Phylogeny, Water PurificationEnzymology
Enzymology23883411Sequencing of the grxB gene of Cronobacter spp. and the development of a PCR assay for its identification.Dong X, Wu Q, Zhang J, Mo S, Kou X, Guo WFoodborne Pathog Dis10.1089/fpd.2012.14312013Bacterial Proteins/*genetics, Cloning, Molecular, Colony Count, Microbial, Cronobacter sakazakii/*genetics/*isolation & purification, DNA Primers/genetics, DNA, Bacterial/genetics/isolation & purification, Food Contamination/*analysis, Food Microbiology, Glutaredoxins/*genetics, Humans, Infant, Infant Formula/chemistry, Polymerase Chain Reaction/*methodsPhylogeny
Metabolism24010592Effect of heat shock on the fatty acid and protein profiles of Cronobacter sakazakii BCRC 13988 as well as its growth and survival in the presence of various carbon, nitrogen sources and disinfectants.Li PT, Hsiao WL, Yu RC, Chou CCFood Microbiol10.1016/j.fm.2013.04.0182013Bacterial Proteins/genetics/*metabolism, Carbon/*metabolism, Cronobacter sakazakii/*drug effects/genetics/*growth & development/metabolism, Disinfectants/*pharmacology, Fatty Acids/chemistry/*metabolism, Hot Temperature, Microbial Viability/drug effects, Nitrogen/*metabolismPathogenicity
Biotechnology24102218Development of a PCR assay for rapid detection of Cronobacter spp. from food.Chen W, Ai L, Yang J, Ren J, Li Y, Guo BCan J Microbiol10.1139/cjm-2013-02432013Cronobacter/genetics/*isolation & purification, *Food Microbiology, Humans, Infant, Infant Formula, Meningitis/microbiology, Molecular Sequence Data, Polymerase Chain Reaction/*methods, Sensitivity and SpecificityPathogenicity
Metabolism24549330Putative Inv is essential for basolateral invasion of Caco-2 cells and acts synergistically with OmpA to affect in vitro and in vivo virulence of Cronobacter sakazakii ATCC 29544.Chandrapala D, Kim K, Choi Y, Senevirathne A, Kang DH, Ryu S, Kim KPInfect Immun10.1128/IAI.01397-132014Adhesins, Bacterial/genetics/*metabolism, Animals, Bacterial Outer Membrane Proteins/*metabolism, Cell Line, Cronobacter sakazakii/*classification/genetics/metabolism/*pathogenicity, Gene Deletion, Gene Expression Regulation, Bacterial/physiology, Humans, Rats, Rats, Sprague-Dawley, Specific Pathogen-Free Organisms, VirulencePathogenicity
Phylogeny24929712Development of a rapid detection system for opportunistic pathogenic Cronobacter spp. in powdered milk products.Zimmermann J, Schmidt H, Loessner MJ, Weiss AFood Microbiol10.1016/j.fm.2014.02.0102014Animals, Bacterial Outer Membrane Proteins/genetics, Cronobacter/classification/genetics/*isolation & purification, Food Contamination/*analysis, Food Microbiology, Humans, Milk/*microbiology, Polymerase Chain Reaction/*methods, Powders/chemistryBiotechnology
Metabolism25332122Plasmid-encoded MCP is involved in virulence, motility, and biofilm formation of Cronobacter sakazakii ATCC 29544.Choi Y, Kim S, Hwang H, Kim KP, Kang DH, Ryu SInfect Immun10.1128/IAI.02633-142014Animals, Bacterial Adhesion, Bacterial Proteins/genetics/*metabolism, Biofilms/*growth & development, Cell Line, Cronobacter sakazakii/genetics/growth & development/*physiology, DNA Transposable Elements, DNA, Bacterial/chemistry/genetics, Disease Models, Animal, Enterobacteriaceae Infections/microbiology/pathology, Epithelial Cells/microbiology, Female, Gene Deletion, Humans, *Locomotion, Membrane Proteins/genetics/*metabolism, Methyl-Accepting Chemotaxis Proteins, Molecular Sequence Data, Mutagenesis, Insertional, *Plasmids, Rats, Sprague-Dawley, Sequence Analysis, DNA, VirulencePathogenicity
Stress25754196Hfq plays important roles in virulence and stress adaptation in Cronobacter sakazakii ATCC 29544.Kim S, Hwang H, Kim KP, Yoon H, Kang DH, Ryu SInfect Immun10.1128/IAI.03161-142015Animals, Cell Line, Cronobacter sakazakii/genetics/growth & development/*physiology, Enterobacteriaceae Infections/*microbiology/pathology, Gene Knockout Techniques, Host Factor 1 Protein/genetics/*metabolism, Locomotion, Macrophages/microbiology, Mice, Inbred BALB C, *Microbial Viability, Rats, Sprague-Dawley, *Stress, Physiological, VirulencePathogenicity
Enzymology25951398Development of Bioluminescent Cronobacter sakazakii ATCC 29544 in a Mouse Model.Wang X, Li Z, Dong X, Chi H, Wang G, Li J, Sun R, Chen M, Zhang X, Wang Y, Qu H, Sun Y, Xia Z, Li QJ Food Prot10.4315/0362-028X.JFP-14-4822015Animals, Cronobacter sakazakii/*isolation & purification, *Disease Models, Animal, Enterobacteriaceae Infections/*diagnosis, Luminescent Measurements/*methods, Mice, Mice, Inbred BALB CPhylogeny
Pathogenicity26805974Evaluation of probiotic properties of Lactobacillus plantarum WLPL04 isolated from human breast milk.Jiang M, Zhang F, Wan C, Xiong Y, Shah NP, Wei H, Tao XJ Dairy Sci10.3168/jds.2015-104342016Animals, Caco-2 Cells, Cytokines/*immunology, Female, Gram-Negative Bacteria/*growth & development, Gram-Positive Bacteria/*growth & development, Humans, Lactobacillus plantarum/isolation & purification/*physiology, Milk, Human/*microbiology, *ProbioticsEnzymology
Pathogenicity27337492Influence of sweet whey protein concentrate and its hydrolysates on host-pathogen interactions in the emerging foodborne pathogen Cronobacter sakazakii.McEvoy K, Hayes J, Kealey C, Brady DJ Appl Microbiol10.1111/jam.132122016Animals, Caco-2 Cells, Cronobacter sakazakii/*drug effects/genetics/isolation & purification/physiology, Enterobacteriaceae Infections/*microbiology, Foodborne Diseases/*microbiology, Host-Pathogen Interactions/*drug effects, Humans, Intestines/microbiology, Microbial Viability/drug effects, Milk/chemistry, Protein Hydrolysates/chemistry/*pharmacology, Whey Proteins/chemistry/*pharmacologyEnzymology
Genetics28053670The complete genome sequence of Cronobacter sakazakii ATCC 29544(T), a food-borne pathogen, isolated from a child's throat.Kim S, Kim YT, Yoon H, Lee JH, Ryu SGut Pathog10.1186/s13099-016-0150-02017
Pathogenicity28088406Short communication: Effects of vacuum freeze-drying on inactivation of Cronobacter sakazakii ATCC29544 in liquid media with different initial inoculum levels.Jiao R, Gao J, Zhang X, Zhang M, Chen J, Wu Q, Zhang J, Ye YJ Dairy Sci10.3168/jds.2016-119372017Animals, Colony Count, Microbial, Cronobacter sakazakii/*drug effects, Food Handling, *Food Microbiology, Freeze Drying, Humans, Infant, Infant Formula, VacuumBiotechnology
28286570Strain-specific probiotic properties of lactic acid bacteria and their interference with human intestinal pathogens invasion.Campana R, van Hemert S, Baffone WGut Pathog10.1186/s13099-017-0162-42017
28293226Cronobacter sakazakii ATCC 29544 Autoaggregation Requires FliC Flagellation, Not Motility.Hoeflinger JL, Miller MJFront Microbiol10.3389/fmicb.2017.003012017
Enzymology28515389Ca(2+) in Hybridization Solutions for Fluorescence in situ Hybridization Facilitates the Detection of Enterobacteriaceae.Haruta S, Iino T, Ohkuma M, Suzuki KI, Igarashi YMicrobes Environ10.1264/jsme2.ME161862017Calcium/*chemistry, Enterobacteriaceae/*isolation & purification, *In Situ Hybridization, Fluorescence, Oligonucleotide ProbesPhylogeny
Metabolism28863970Characterization of an antimicrobial substance produced by Lactobacillus plantarum NTU 102.Lin TH, Pan TMJ Microbiol Immunol Infect10.1016/j.jmii.2017.08.0032017Anti-Infective Agents/chemistry/metabolism/*pharmacology, Bacteria/drug effects/growth & development, Candida albicans/drug effects/growth & development, Culture Media, Conditioned/analysis, Food Preservatives/chemistry/metabolism/*pharmacology, Hydrogen-Ion Concentration, Lactobacillus plantarum/*metabolism, Microbial Sensitivity Tests, Microbial Viability/drug effects, Peptide Hydrolases/metabolism, TemperaturePathogenicity
Metabolism28873731Comparative proteomic analysis of Cronobacter sakazakii by iTRAQ provides insights into response to desiccation.Hu S, Yu Y, Wu X, Xia X, Xiao X, Wu HFood Res Int10.1016/j.foodres.2017.06.0512017Bacterial Proteins/*analysis/chemistry/metabolism, Chromatography, Liquid, *Cronobacter sakazakii/metabolism/physiology, Dehydration/*metabolism, Hot Temperature, Isotope Labeling, Protein Interaction Mapping, Protein Interaction Maps/*physiology, Proteome/*analysis/chemistry/metabolism, Proteomics, Stress, Physiological, Tandem Mass SpectrometryProteome
29234307Thymoquinone Inhibits Virulence Related Traits of Cronobacter sakazakii ATCC 29544 and Has Anti-biofilm Formation Potential.Shi C, Yan C, Sui Y, Sun Y, Guo D, Chen Y, Jin T, Peng X, Ma L, Xia XFront Microbiol10.3389/fmicb.2017.022202017
29488508Corrigendum: Thymoquinone Inhibits Virulence Related Traits of Cronobacter sakazakii ATCC 29544 and Has Anti-biofilm Formation Potential.Shi C, Yan C, Sui Y, Sun Y, Guo D, Chen Y, Jin T, Peng X, Ma L, Xia XFront Microbiol10.3389/fmicb.2018.002902018
29593704Cellular Injuries in Cronobacter sakazakii CIP 103183T and Salmonella enterica Exposed to Drying and Subsequent Heat Treatment in Milk Powder.Lang E, Guyot S, Peltier C, Alvarez-Martin P, Perrier-Cornet JM, Gervais PFront Microbiol10.3389/fmicb.2018.004752018
31010122Chemical Compositions of the Volatile Oils and Antibacterial Screening of Solvent Extract from Downy Lavender.Park CH, Park YE, Yeo HJ, Chun SW, Baskar TB, Lim SS, Park SUFoods10.3390/foods80401322019
31135183Evaluation of Methods for Inoculating Dry Powder Foods with Salmonella enterica, Enterococcus faecium, or Cronobacter sakazakii.Wiertzema JR, Borchardt C, Beckstrom AK, Dev K, Chen P, Chen C, Vickers Z, Feirtag J, Lee L, Ruan R, Baumler DJJ Food Prot10.4315/0362-028X.JFP-18-2842019
31413422Lactobacillus spp. inhibit the growth of Cronobacter sakazakii ATCC 29544 by altering its membrane integrity.Campana R, Federici S, Ciandrini E, Manti A, Baffone WJ Food Sci Technol10.1007/s13197-019-03928-x2019
Pathogenicity31685860Effect of low doses of biocides on the antimicrobial resistance and the biofilms of Cronobacter sakazakii and Yersinia enterocolitica.Capita R, Vicente-Velasco M, Rodriguez-Melcon C, Garcia-Fernandez C, Carballo J, Alonso-Calleja CSci Rep10.1038/s41598-019-51907-12019Anti-Bacterial Agents/pharmacology, Benzalkonium Compounds/pharmacology, Biofilms/*drug effects, Cronobacter sakazakii/growth & development/*physiology, Disinfectants/*pharmacology, Microbial Sensitivity Tests, Peracetic Acid/pharmacology, Polystyrenes/chemistry, Sodium Hypochlorite/pharmacology, Yersinia enterocolitica/growth & development/*physiology
33379250Optimization of UV-C Processing of Donkey Milk: An Alternative to Pasteurization?Papademas P, Mousikos P, Aspri MAnimals (Basel)10.3390/ani110100422020
Biotechnology34053539Effect of 405-nm light-emitting diode on environmental tolerance of Cronobacter sakazakii in powdered infant formula.Zheng Z, Xie Y, Ma S, Tu J, Li J, Liang S, Xu Y, Shi CFood Res Int10.1016/j.foodres.2021.1103432021*Cronobacter sakazakii, Food Handling, Food Microbiology, Humans, Infant, Infant Formula, Infant, Newborn, PowdersPathogenicity
34163451Cronobacter sakazakii ATCC 29544 Translocated Human Brain Microvascular Endothelial Cells via Endocytosis, Apoptosis Induction, and Disruption of Tight Junction.Jin T, Guan N, Du Y, Zhang X, Li J, Xia XFront Microbiol10.3389/fmicb.2021.6750202021
Phenotype34644165Alterations in the Transcriptional Landscape Allow Differential Desiccation Tolerance in Clinical Cronobacter sakazakii.Cao Y, Dever K, Sivasankaran SK, Nguyen SV, Macori G, Naithani A, Gopinath GR, Tall B, Lehner A, Stephan R, Srikumar S, Fanning SAppl Environ Microbiol10.1128/AEM.00830-212021Adaptation, Physiological, Biological Evolution, *Cronobacter sakazakii/genetics, *Desiccation, Genes, Bacterial, Phenotype, *TranscriptomeTranscriptome
Biotechnology34908438Why Does Cronobacter sakazakii Survive for a Long Time in Dry Environments? Contribution of the Glass Transition of Dried Bacterial Cells.Lee K, Koyama K, Kawai K, Koseki SMicrobiol Spectr10.1128/spectrum.01384-212021Cronobacter sakazakii/*physiology, *Desiccation, *Food Handling, Food Microbiology, Foodborne Diseases/microbiology/prevention & control, Humans, Infant, Infant Formula/microbiology, *Stress, Mechanical, Temperature, *VitrificationPathogenicity
Phylogeny35058898Chemotaxis and Shorter O-Antigen Chain Length Contribute to the Strong Desiccation Tolerance of a Food-Isolated Cronobacter sakazakii Strain.Qian C, Huang M, Du Y, Song J, Mu H, Wei Y, Zhang S, Yin Z, Yuan C, Liu B, Liu BFront Microbiol10.3389/fmicb.2021.7795382022

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1698Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4485)https://www.dsmz.de/collection/catalogue/details/culture/DSM-4485
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
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41818Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/14952
46134Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 14558)https://www.ccug.se/strain?id=14558
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
122353Curators of the CIPCollection of Institut Pasteur (CIP 103183)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103183