Strain identifier
BacDive ID: 5233
Type strain: 
Species: Yersinia pekkanenii
Strain Designation: Å125KOH2
Strain history: <- A. Murros-Kontiainen, Faculty Veterinary Medicine, Univ. Helsinki, Finland; Å125KOH2 <- T. Niskanen
NCBI tax ID(s): 1288385 (species)
General
@ref: 16509
BacDive-ID: 5233
DSM-Number: 22770
keywords: 16S sequence, Bacteria, mesophilic
description: Yersinia pekkanenii Å125KOH2 is a mesophilic bacterium that was isolated from lettuce.
NCBI tax id
- NCBI tax id: 1288385
- Matching level: species
strain history
- @ref: 16509
- history: <- A. Murros-Kontiainen, Faculty Veterinary Medicine, Univ. Helsinki, Finland; Å125KOH2 <- T. Niskanen
doi: 10.13145/bacdive5233.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Yersiniaceae
- genus: Yersinia
- species: Yersinia pekkanenii
- full scientific name: Yersinia pekkanenii Murros-Kontiainen et al. 2011
@ref: 16509
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Yersiniaceae
genus: Yersinia
species: Yersinia pekkanenii
full scientific name: Yersinia pekkanenii Murros-Kontiainen et al. 2011
strain designation: Å125KOH2
type strain: no
Culture and growth conditions
culture medium
- @ref: 16509
- name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535
- composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
- @ref: 16509
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 16509
- sample type: lettuce
- country: Finland
- origin.country: FIN
- continent: Europe
isolation source categories
- Cat1: #Host
- Cat2: #Plants
- Cat3: #Herbaceous plants (Grass,Crops)
Safety information
risk assessment
- @ref: 16509
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16509
- description: Yersinia pekkanenii strain A125KOH2 16S ribosomal RNA gene, partial sequence
- accession: GQ451988
- length: 1483
- database: ena
- NCBI tax ID: 1288385
GC content
- @ref: 16509
- GC-content: 47.5
- method: fluorimetric
External links
@ref: 16509
culture collection no.: DSM 22770
straininfo link
- @ref: 74725
- straininfo: 402296
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 16509 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22770) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22770 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 74725 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID402296.1 | StrainInfo: A central database for resolving microbial strain identifiers |