Strain identifier

BacDive ID: 5232

Type strain: Yes

Species: Yersinia pekkanenii

Strain Designation: ÅYV7.1KOH2, AYV7.1KOH2

Strain history: CIP <- 2010, DSMZ <- A. Murros-Kontiainen, Helsinki Univ., Helsinki, Finland: strain AYV7.1KOH2 <- T. Niskanen

NCBI tax ID(s): 687899 (strain), 1288385 (species)

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General

@ref: 16508

BacDive-ID: 5232

DSM-Number: 22769

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped

description: Yersinia pekkanenii ÅYV7.1KOH2 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from water.

NCBI tax id

NCBI tax idMatching level
687899strain
1288385species

strain history

@refhistory
16508<- A. Murros-Kontiainen, Faculty Veterinary Medicine, Univ. Helsinki, Finland; ÅYV7.1KOH2 <- T. Niskanen
121648CIP <- 2010, DSMZ <- A. Murros-Kontiainen, Helsinki Univ., Helsinki, Finland: strain AYV7.1KOH2 <- T. Niskanen

doi: 10.13145/bacdive5232.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Yersiniaceae
  • genus: Yersinia
  • species: Yersinia pekkanenii
  • full scientific name: Yersinia pekkanenii Murros-Kontiainen et al. 2011

@ref: 16508

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Yersiniaceae

genus: Yersinia

species: Yersinia pekkanenii

full scientific name: Yersinia pekkanenii Murros-Kontiainen et al. 2011

strain designation: ÅYV7.1KOH2, AYV7.1KOH2

type strain: yes

Morphology

cell morphology

  • @ref: 121648
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16508TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
37684MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
121648CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
16508positivegrowth28mesophilic
37684positivegrowth30mesophilic
62512positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
62512aerobe
121648facultative anaerobe

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol+builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371L-xylose-builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68368L-arabinose+fermentation30849
68368amygdalin+fermentation27613
68368melibiose-fermentation28053
68368sucrose-fermentation17992
68368L-rhamnose-fermentation62345
68368sorbitol-fermentation30911
68368myo-inositol-fermentation17268
68368D-mannitol+fermentation16899
68368D-glucose+fermentation17634
68368gelatin-hydrolysis5291
68368tryptophan-energy source27897
68368urea+hydrolysis16199
68368citrate-assimilation16947
68368ornithine-degradation18257
68368lysine-degradation25094
68368arginine-hydrolysis29016
121648nitrate+reduction17632
121648nitrite-reduction16301

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno
12164835581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23
121648oxidase-
121648catalase+1.11.1.6
121648urease+3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
121648-++--+--+-++---+-+--

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
16508+-----+----++-----++-

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
121648+/---+++-+/--++++----+---+-+/---++---+------+-----+----

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentsampling dategeographic location
16508waterFinlandFINEurope
62512LettuceFinlandFINEurope2000
121648Environment, Water, soil and letuce samplesFinlandFINEuropeHelsinki

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
165081Risk group (German classification)
1216482Risk group (French classification)

Sequence information

16S sequences

  • @ref: 16508
  • description: Yersinia pekkanenii DSM 22769 strain AYV7.1KOH2 16S ribosomal RNA gene, partial sequence
  • accession: GQ451990
  • length: 1451
  • database: ena
  • NCBI tax ID: 687899

GC content

  • @ref: 16508
  • GC-content: 47.5
  • method: fluorimetric

External links

@ref: 16508

culture collection no.: DSM 22769, LMG 25369, CCUG 60991, CIP 110230

straininfo link

  • @ref: 74724
  • straininfo: 378362

literature

  • topic: Phylogeny
  • Pubmed-ID: 21037033
  • title: Yersinia pekkanenii sp. nov.
  • authors: Murros-Kontiainen A, Johansson P, Niskanen T, Fredriksson-Ahomaa M, Korkeala H, Bjorkroth J
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.019984-0
  • year: 2010
  • mesh: Bacterial Proteins/genetics, Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Lettuce/microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Ribotyping, Sequence Analysis, DNA, Soil Microbiology, Virulence Factors/genetics, Water Microbiology, Yersinia/*classification/genetics/*isolation & purification
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitle
16508Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22769)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22769
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
37684Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/8066
62512Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 60991)https://www.ccug.se/strain?id=60991
68368Automatically annotated from API 20E
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
74724Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID378362.1StrainInfo: A central database for resolving microbial strain identifiers
121648Curators of the CIPCollection of Institut Pasteur (CIP 110230)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110230