Strain identifier

BacDive ID: 5225

Type strain: Yes

Species: Yersinia mollaretii

Strain history: CIP <- 1989, H.H. Mollaret, Inst. Pasteur, Paris, France: strain CNY 7263

NCBI tax ID(s): 349967 (strain), 33060 (species)

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General

@ref: 7573

BacDive-ID: 5225

DSM-Number: 18520

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile

description: Yersinia mollaretii DSM 18520 is a mesophilic, motile bacterium that was isolated from soil.

NCBI tax id

NCBI tax idMatching level
33060species
349967strain

strain history

@refhistory
7573<- CIP <- H. H. Mollaret, Institut Pasteur, Paris
342431989, H.H. Mollaret, Inst. Pasteur, Paris, France: strain CNY 7263
121003CIP <- 1989, H.H. Mollaret, Inst. Pasteur, Paris, France: strain CNY 7263

doi: 10.13145/bacdive5225.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Yersiniaceae
  • genus: Yersinia
  • species: Yersinia mollaretii
  • full scientific name: Yersinia mollaretii Wauters et al. 1988

@ref: 7573

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Yersiniaceae

genus: Yersinia

species: Yersinia mollaretii

full scientific name: Yersinia mollaretii Wauters et al. 1988

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes98.708
6948099.957negative

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7573BHI MEDIUM (DSMZ Medium 215)yeshttps://mediadive.dsmz.de/medium/215Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
7573TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
34243MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
121003CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3
121003CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
7573positivegrowth28mesophilic
34243positivegrowth30mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.647

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose-fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea+hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
7573+--++-+----++-+-+-++-

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
7573soilUSAUSANorth America
48415SoilUSAUSANorth America
121003Environment, SoilUnited States of AmericaUSANorth America

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
75731Risk group (German classification)
1210032Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Yersinia mollaretii strain ATCC 43969 16S ribosomal RNA gene, partial sequenceAY332837458ena349967
20218Yersinia mollaretii strain CCUG 26331 16S ribosomal RNA gene, partial sequenceEF1791241461ena33060
7573Yersinia mollaretii 16S ribosomal RNA gene, partial sequenceAF3663821461ena349967

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Yersinia mollaretii ATCC 43969GCA_013282725completencbi349967
66792Yersinia mollaretii ATCC 43969GCA_000167995contigncbi349967
66792Yersinia mollaretii ATCC 43969349967.4wgspatric349967
66792Yersinia mollaretii ATCC 43969349967.11completepatric349967
66792Yersinia mollaretii ATCC 43969638341241draftimg349967

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes89.614no
flagellatedyes55.304no
gram-positiveno98.743no
anaerobicno96.608no
aerobicyes88.522no
halophileno96.117no
spore-formingno95.026no
glucose-utilyes95.742no
thermophileno99.207yes
glucose-fermentyes94.057yes

External links

@ref: 7573

culture collection no.: DSM 18520, ATCC 43969, CCUG 26331, CDC 2465-87, CIP 103324, CNY 7263

straininfo link

  • @ref: 74717
  • straininfo: 42157

literature

  • Pubmed-ID: 32540974
  • title: Mutational Effects on Carbapenem Hydrolysis of YEM-1, a New Subclass B2 Metallo-beta-Lactamase from Yersinia mollaretii.
  • authors: Mercuri PS, Esposito R, Bletard S, Di Costanzo S, Perilli M, Kerff F, Galleni M
  • journal: Antimicrob Agents Chemother
  • DOI: 10.1128/AAC.00105-20
  • year: 2020
  • mesh: Anti-Bacterial Agents/pharmacology, *Carbapenems/pharmacology, Hydrolysis, Imipenem, Yersinia, *beta-Lactamases/genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7573Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18520)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18520
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
34243Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15109
48415Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 26331)https://www.ccug.se/strain?id=26331
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68368Automatically annotated from API 20E
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
74717Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID42157.1StrainInfo: A central database for resolving microbial strain identifiers
121003Curators of the CIPCollection of Institut Pasteur (CIP 103324)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103324