Strain identifier
BacDive ID: 522
Type strain: 
Species: Thermocrinis ruber
Strain Designation: OC 1/4
Strain history: <- R. Huber and K. O. Stetter; OC 1/4 (Originally deposited as a strain of Thermocrinis ruber, but this strain does not appear to be an authentic sub-culture of strains OC 1/4)
NCBI tax ID(s): 932678 (strain), 136094 (species)
version 8.1 (current version)
General
@ref: 4632
BacDive-ID: 522
DSM-Number: 12173
keywords: Bacteria, hyperthermophilic
description: Thermocrinis ruber OC 1/4 is a hyperthermophilic bacterium that was isolated from pink filamentous cell masses from a hot spring.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 932678 | strain |
| 136094 | species |
strain history
- @ref: 4632
- history: <- R. Huber and K. O. Stetter; OC 1/4 (Originally deposited as a strain of Thermocrinis ruber, but this strain does not appear to be an authentic sub-culture of strains OC 1/4)
doi: 10.13145/bacdive522.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/aquificota
- domain: Bacteria
- phylum: Aquificota
- class: Aquificia
- order: Aquificales
- family: Aquificaceae
- genus: Thermocrinis
- species: Thermocrinis ruber
- full scientific name: Thermocrinis ruber Huber et al. 1999
@ref: 4632
domain: Bacteria
phylum: Aquificae
class: Aquificae
order: Aquificales
family: Aquificaceae
genus: Thermocrinis
species: Thermocrinis albus
full scientific name: Thermocrinis albus Eder and Huber 2002
strain designation: OC 1/4
type strain: no
Culture and growth conditions
culture medium
- @ref: 4632
- name: OS MEDIUM (DSMZ Medium 887)
- growth: yes
- link: https://mediadive.dsmz.de/medium/887
- composition: Name: OS MEDIUM (DSMZ Medium 887) Composition: Gelrite 15.0 g/l NaHCO3 1.0 g/l Na2S2O3 x 5 H2O 1.0 g/l MgSO4 x 7 H2O 0.03 g/l Na2SO4 0.023 g/l Nitrilotriacetic acid 0.015 g/l KCl 0.015 g/l NaCl 0.01 g/l MnSO4 x H2O 0.005 g/l CoSO4 x 7 H2O 0.0018 g/l ZnSO4 x 7 H2O 0.0018 g/l KH2PO4 0.0017 g/l CaCl2 x 2 H2O 0.001 g/l FeSO4 x 7 H2O 0.001 g/l NaNO3 0.0003 g/l NiCl2 x 6 H2O 0.0003 g/l AlK(SO4)2 x 12 H2O 0.0002 g/l FeCl3 x 6 H2O 0.0001 g/l CuSO4 x 5 H2O 0.0001 g/l H3BO3 0.0001 g/l Na2MoO4 x 2 H2O 0.0001 g/l MnSO4 x 4 H2O 6e-05 g/l Na2WO4 x 2 H2O 4e-06 g/l Na2SeO3 x 5 H2O 3e-06 g/l Distilled water
culture temp
- @ref: 4632
- growth: positive
- type: growth
- temperature: 80
- range: hyperthermophilic
Isolation, sampling and environmental information
isolation
- @ref: 4632
- sample type: pink filamentous cell masses from a hot spring
- geographic location: Wyoming, Yellowstone National Park, Octopus Spring
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Thermal spring |
| #Condition | #Thermophilic (>45°C) |
Safety information
risk assessment
- @ref: 4632
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
GC content
- @ref: 4632
- GC-content: 47.5
External links
@ref: 4632
culture collection no.: DSM 12173
straininfo link
- @ref: 70200
- straininfo: 49245
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 9758770 | Thermocrinis ruber gen. nov., sp. nov., A pink-filament-forming hyperthermophilic bacterium isolated from yellowstone national park | Huber R, Eder W, Heldwein S, Wanner G, Huber H, Rachel R, Stetter KO | Appl Environ Microbiol | 10.1128/AEM.64.10.3576-3583.1998 | 1998 | ||
| Phylogeny | 19651724 | Thermocrinis minervae sp. nov., a hydrogen- and sulfur-oxidizing, thermophilic member of the Aquificales from a Costa Rican terrestrial hot spring. | Caldwell SL, Liu Y, Ferrera I, Beveridge T, Reysenbach AL | Int J Syst Evol Microbiol | 10.1099/ijs.0.010496-0 | 2009 | Base Composition, Costa Rica, DNA, Bacterial/chemistry, Gram-Negative Bacteria/*classification/genetics/metabolism, Hot Springs/*microbiology, Hydrogen/metabolism, Molecular Sequence Data, Oxidation-Reduction, Phylogeny, RNA, Bacterial/chemistry, RNA, Ribosomal, 16S/genetics, Sequence Analysis, RNA, Sulfur/metabolism, *Water Microbiology | Metabolism |
| Phylogeny | 32172288 | Recognition of the unsuitability of DSM 12173 as the deposited type strain of Thermocrinis ruber Huber et al. 1999, recognition of DSM 23557 as an authentic sub-culture of strain OC 1/4, the nomenclatural type of Thermocrinis ruber Huber et al. 1999 and an emended description of Thermocrinis ruber Huber et al. 1999. | Eder W, Tindall BJ, Huber H, Peplies J, Wirth R | Arch Microbiol | 10.1007/s00203-020-01850-x | 2020 | Bacteria/*classification/*genetics, Bacterial Typing Techniques, DNA, Bacterial/*genetics, Fatty Acids, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 4632 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 12173) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-12173 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 70200 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID49245.1 | StrainInfo: A central database for resolving microbial strain identifiers |