Strain identifier

BacDive ID: 5210

Type strain: Yes

Species: Yersinia enterocolitica

Strain Designation: 33114

Strain history: CIP <- 1980, H.H. Mollaret, Inst. Pasteur, Paris, France: strain CNY 161 <- 1932, R.M. Pike, Bacterium enterocoliticum

NCBI tax ID(s): 1218100 (strain), 630 (species)

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General

@ref: 1821

BacDive-ID: 5210

DSM-Number: 4780

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Yersinia enterocolitica 33114 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from glanders-like infection of face .

NCBI tax id

NCBI tax idMatching level
1218100strain
630species

strain history

@refhistory
1821<- ATCC; ATCC 9610 <- J.M. Coffey; 33114 (Bacterium enterocoliticum)
67770R. Sakazaki 446 <-- J. M. Coffey 33114 <-- M. McIver and R. Pike.
119059CIP <- 1980, H.H. Mollaret, Inst. Pasteur, Paris, France: strain CNY 161 <- 1932, R.M. Pike, Bacterium enterocoliticum

doi: 10.13145/bacdive5210.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Yersiniaceae
  • genus: Yersinia
  • species: Yersinia enterocolitica
  • full scientific name: Yersinia enterocolitica (Schleifstein and Coleman 1939) Frederiksen 1964 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Bacterium enterocoliticum

@ref: 1821

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Yersiniaceae

genus: Yersinia

species: Yersinia enterocolitica subsp. enterocolitica

full scientific name: Yersinia enterocolitica subsp. enterocolitica (Schleifstein and Coleman 1939) Neubauer et al. 2000

strain designation: 33114

type strain: yes

Morphology

cell morphology

  • @ref: 119059
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1821COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
32772MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
1821TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium92.pdf
119059CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
119059CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
1821positivegrowth37mesophilic
1821positivegrowth30mesophilic
32772positivegrowth30mesophilic
67770positivegrowth30mesophilic
119059positivegrowth10-41
119059nogrowth5psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 119059
  • oxygen tolerance: facultative anaerobe

antibiogram

  • @ref: 1821
  • medium: Mueller-Hinton Agar
  • Penicillin G: 20-22
  • oxacillin: 0
  • ampicillin: 28-30
  • ticarcillin: 36
  • mezlocillin: 36
  • cefalotin: 32
  • cefazolin: 32
  • cefotaxime: >50
  • aztreonam: >50
  • imipenem: 40
  • tetracycline: 34-36
  • chloramphenicol: 34-36
  • gentamycin: 24
  • amikacin: 26
  • vancomycin: 6-8
  • erythromycin: 12-14
  • lincomycin: 12
  • ofloxacin: 42
  • norfloxacin: 44-46
  • colistin: 18
  • pipemidic acid: 36
  • nitrofurantoin: 20-22
  • bacitracin: 8
  • polymyxin b: 18
  • kanamycin: 26
  • neomycin: 20
  • doxycycline: 34
  • ceftriaxone: >50
  • clindamycin: 10-12
  • fosfomycin: >50
  • moxifloxacin: 40
  • linezolid: 8-10
  • nystatin: 12-14
  • quinupristin/dalfopristin: 0
  • teicoplanin: 0
  • piperacillin/tazobactam: 42-44

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose-fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol+fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan+energy source
6836816199urea+hydrolysis
6836818257ornithine+degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis
11905929864mannitol+fermentation
11905916947citrate-carbon source
11905917234glucose+fermentation
11905917716lactose+fermentation
11905917632nitrate+reduction
11905916301nitrite-reduction
11905915792malonate-assimilation
119059132112sodium thiosulfate-builds gas from
11905917234glucose+degradation

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinyes
6836835581indoleyes
6836816136hydrogen sulfideno
11905935581indoleyes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole testmethylred-test
6836815688acetoin+
6836835581indole+
11905915688acetoin-
11905917234glucose+

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23
119059oxidase-
119059beta-galactosidase+3.2.1.23
119059alcohol dehydrogenase-1.1.1.1
119059gelatinase-
119059catalase+1.11.1.6
119059lysine decarboxylase-4.1.1.18
119059ornithine decarboxylase+4.1.1.17
119059tryptophan deaminase-
119059urease+3.5.1.5

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
1821+--++-+-++-++++-+-++-
1821+--+--+-++-++-+-+-++-

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentisolation date
1821glanders-like infection of face (woman, 53 years old)
67770Glanders-like infection of face
119059Face, glanders-like infectionFranceFRAEurope1932

isolation source categories

  • Cat1: #Infection
  • Cat2: #Disease

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
18212Risk group (German classification)
1190592Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Yersinia enterocolitica 16S ribosomal RNA gene, partial sequenceAF3663781461ena630
20218Yersinia enterocolitica partial 16S rRNA gene, type strain ATCC 9610TAJ6396451086ena630
20218Yersinia enterocolitica subsp. enterocolitica strain ATCC 9610 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequenceEU294313939ena150052
20218Yersinia enterocolitica subsp. enterocolitica strain ATCC 9610 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequenceEU294314960ena150052
20218Yersinia enterocolitica subsp. enterocolitica strain ATCC 9610 16S ribosomal RNA gene, partial sequenceFJ7173431466ena150052
20218Yersinia enterocolitica partial 16S rRNA gene, strain ATCC 9610FM207093395ena630
20218Yersinia enterocolitica strain ATCC 9610 16S ribosomal RNA gene, partial sequenceKC788290410ena630
20218Yersinia enterocolitica 16S ribosomal RNAM592921485ena630
20218Yersinia enterocolitica strain CCUG 11291 16S ribosomal RNA gene, partial sequenceEF1791281461ena630
20218Yersinia enterocolitica strain CCUG 12369 16S ribosomal RNA gene, partial sequenceEF1791291461ena630
1821Yersinia enterocolitica strain ATCC 9610 16S ribosomal RNA, partial sequenceNR_0418321461nuccore630

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Yersinia enterocolitica subsp. enterocolitica NCTC12982GCA_901472495completencbi150052
66792Yersinia enterocolitica strain ATCC 9610630.33completepatric630
66792Yersinia enterocolitica subsp. enterocolitica NBRC 1056931218100.3wgspatric1218100
66792Yersinia enterocolitica subsp. enterocolitica strain NCTC12982150052.14completepatric150052
66792Yersinia enterocolitica enterocolitica NBRC 1056932731957712draftimg1218100
67770Yersinia enterocolitica subsp. enterocolitica NBRC 105693GCA_001598735contigncbi1218100
67770Yersinia enterocolitica ATCC 9610GCA_000755055scaffoldncbi630

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedyes55.531no
gram-positiveno98.8no
anaerobicno96.112no
aerobicyes92.341no
halophileno93.954no
spore-formingno94.536no
thermophileno99.345yes
glucose-utilyes94.333no
motileyes90.833no
glucose-fermentyes94.106no

External links

@ref: 1821

culture collection no.: DSM 4780, ATCC 9610, CIP 80.27, NCTC 12982, WDCM 00038, JCM 7577, BCRC 13999, CCM 7204, CCUG 11291, CCUG 12369, CECT 4315, ICMP 15678, LMG 7899, NBRC 105693, NRIC 0819, VTT E-97838, CNY 161

straininfo link

  • @ref: 74702
  • straininfo: 10385

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Pathogenicity7997643Properties of Yersinia enterocolitica porins: interference with biological functions of phagocytes, nitric oxide production and selective cytokine release.Tufano MA, Rossano F, Catalanotti P, Liguori G, Marinelli A, Baroni A, Marinelli PRes Microbiol10.1016/0923-2508(94)90185-61994Chemotaxis/drug effects, Cytokines/biosynthesis, Electrophoresis, Polyacrylamide Gel, Humans, In Vitro Techniques, Monocytes/*drug effects/metabolism, Neutrophils/drug effects, Nitrates/*metabolism, Phagocytosis/*drug effects, Porins/biosynthesis/*pharmacology, Yersinia enterocolitica/*metabolismMetabolism
Biotechnology8494689Construction and comparison of response surface kinetic models for the Yersinia enterocolitica type strain and a food isolate under aerobic conditions.Hudson JAInt J Food Microbiol10.1016/0168-1605(93)90045-i1993Aerobiosis, Animals, *Food Microbiology, Hydrogen-Ion Concentration, Kinetics, Meat/*microbiology, Models, Biological, Sheep, Sodium Chloride, Temperature, Yersinia enterocolitica/*growth & developmentEnzymology
Phylogeny11043982Yersinia enterocolitica 16S rRNA gene types belong to the same genospecies but form three homology groups.Neubauer H, Aleksic S, Hensel A, Finke EJ, Meyer HInt J Med Microbiol10.1016/S1438-4221(00)80107-12000Animals, Base Composition, Base Sequence, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Genes, Bacterial, *Genes, rRNA, Humans, Molecular Sequence Data, Nucleic Acid Hybridization, RNA, Ribosomal, 16S/*genetics, Yersinia Infections/microbiology, Yersinia enterocolitica/*classification/geneticsPathogenicity
Phylogeny15095922The application of PCR fingerprinting to the differentiation of Yersinia enterocolitica strains isolated from humans and pigs.Kot B, Blaszczyk MActa Microbiol Pol2003Animals, Cluster Analysis, DNA Fingerprinting/veterinary, DNA, Bacterial/chemistry/genetics, Electrophoresis, Polyacrylamide Gel/veterinary, Humans, Polymerase Chain Reaction/veterinary, Swine, Swine Diseases/*microbiology, Yersinia Infections/*microbiology/*veterinary, Yersinia enterocolitica/classification/*genetics/isolation & purificationEnzymology
Stress16535192Role of Glycine Betaine and Related Osmolytes in Osmotic Stress Adaptation in Yersinia enterocolitica ATCC 9610.Park S, Smith LT, Smith GMAppl Environ Microbiol10.1128/aem.61.12.4378-4381.19951995
Phylogeny20513963Isolation of bacteriocin-like substances producing bacteria from finished cattle-manure compost and activity evaluation against some food-borne pathogenic and spoilage bacteria.Abdel-Mohsein H, Yamamoto N, Otawa K, Tada C, Nakai YJ Gen Appl Microbiol10.2323/jgam.56.1512010Animals, Anti-Bacterial Agents/pharmacology, Bacteriocins/*biosynthesis/pharmacology, Cattle, Enterobacteriaceae/classification/*drug effects/pathogenicity, Food Contamination, *Food Microbiology, Gram-Positive Cocci/classification/*drug effects/pathogenicity, Manure, Microbial Sensitivity Tests, Salmonella/classification/drug effects/*isolation & purification/metabolism, Shigella/classification/drug effects/*isolation & purification/metabolism, SoilPathogenicity
Pathogenicity23571533Synergistic effect between colistin and bacteriocins in controlling Gram-negative pathogens and their potential to reduce antibiotic toxicity in mammalian epithelial cells.Naghmouchi K, Baah J, Hober D, Jouy E, Rubrecht C, Sane F, Drider DAntimicrob Agents Chemother10.1128/AAC.02328-122013Animals, *Bacteriocins/pharmacology, Chlorocebus aethiops, *Colistin/pharmacology/toxicity, Drug Resistance, Multiple, Bacterial, Drug Synergism, Epithelial Cells/*drug effects, Escherichia coli O157/drug effects, Gram-Negative Bacteria/classification/*drug effects, Hemolysis, Humans, Kidney/cytology/drug effects, Leukocytes/drug effects, *Nisin/pharmacology, Pediocins, Vero CellsPhylogeny
Pathogenicity23981870Development of a quaternized chitosan with enhanced antibacterial efficacy.Khaira GK, Kumariya R, Chibber M, Ghosh MJ Water Health10.2166/wh.2013.0292013Aeromonas hydrophila/*drug effects, Analysis of Variance, Anti-Bacterial Agents/chemistry/*pharmacology, Chitosan/chemistry/*pharmacology, Escherichia coli/*drug effects, Flocculation Tests, Listeria monocytogenes/*drug effects, Magnetic Resonance Spectroscopy, Microbial Sensitivity Tests, Quaternary Ammonium Compounds/pharmacology, Water Microbiology, Yersinia enterocolitica/*drug effects
Phylogeny31066656Yersinia hibernica sp. nov., isolated from pig-production environments.Nguyen SV, Muthappa DM, Hurley D, Donoghue O, McCabe E, Anes J, Schaffer K, Murphy BP, Buckley JF, Fanning SInt J Syst Evol Microbiol10.1099/ijsem.0.0034222019Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Ireland, Palatine Tonsil/microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Swine/*microbiology, Yersinia/*classification/isolation & purificationTranscriptome
Pathogenicity31685860Effect of low doses of biocides on the antimicrobial resistance and the biofilms of Cronobacter sakazakii and Yersinia enterocolitica.Capita R, Vicente-Velasco M, Rodriguez-Melcon C, Garcia-Fernandez C, Carballo J, Alonso-Calleja CSci Rep10.1038/s41598-019-51907-12019Anti-Bacterial Agents/pharmacology, Benzalkonium Compounds/pharmacology, Biofilms/*drug effects, Cronobacter sakazakii/growth & development/*physiology, Disinfectants/*pharmacology, Microbial Sensitivity Tests, Peracetic Acid/pharmacology, Polystyrenes/chemistry, Sodium Hypochlorite/pharmacology, Yersinia enterocolitica/growth & development/*physiology
33321703Antibacterial Effect of Aluminum Surfaces Untreated and Treated with a Special Anodizing Based on Titanium Oxide Approved for Food Contact.Di Cerbo A, Mescola A, Iseppi R, Canton R, Rossi G, Stocchi R, Loschi AR, Alessandrini A, Rea S, Sabia CBiology (Basel)10.3390/biology91204562020
33530444Antibacterial Effect of Stainless Steel Surfaces Treated with a Nanotechnological Coating Approved for Food Contact.Di Cerbo A, Mescola A, Rosace G, Stocchi R, Rossi G, Alessandrini A, Preziuso S, Scarano A, Rea S, Loschi AR, Sabia CMicroorganisms10.3390/microorganisms90202482021
35053094A Time-Course Study on a Food Contact Material (FCM)-Certified Coating Based on Titanium Oxide Deposited onto Aluminum.Di Cerbo A, Mescola A, Rosace G, Trovato V, Canton R, Iseppi R, Stocchi R, Ghazanfar S, Rea S, Loschi AR, Sabia CBiology (Basel)10.3390/biology110100972022

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1821Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4780)https://www.dsmz.de/collection/catalogue/details/culture/DSM-4780
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
32772Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/11120
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
74702Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID10385.1StrainInfo: A central database for resolving microbial strain identifiers
119059Curators of the CIPCollection of Institut Pasteur (CIP 80.27)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2080.27