Strain identifier
BacDive ID: 5198
Type strain:
Species: Xenorhabdus miraniensis
Strain Designation: Q1
Strain history: <- P. Tailliez; Q1 <- N. E. Boemare <- R. Akhurst
NCBI tax ID(s): 351674 (species)
General
@ref: 7233
BacDive-ID: 5198
DSM-Number: 17902
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile, animal pathogen
description: Xenorhabdus miraniensis Q1 is a mesophilic, motile animal pathogen that was isolated from Steinernema species.
NCBI tax id
- NCBI tax id: 351674
- Matching level: species
strain history
- @ref: 7233
- history: <- P. Tailliez; Q1 <- N. E. Boemare <- R. Akhurst
doi: 10.13145/bacdive5198.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Morganellaceae
- genus: Xenorhabdus
- species: Xenorhabdus miraniensis
- full scientific name: Xenorhabdus miraniensis Tailliez et al. 2006
@ref: 7233
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Morganellaceae
genus: Xenorhabdus
species: Xenorhabdus miraniensis
full scientific name: Xenorhabdus miraniensis Tailliez et al. 2006
strain designation: Q1
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | yes | 98.118 | |
69480 | 99.976 | negative |
Culture and growth conditions
culture medium
- @ref: 7233
- name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535
- composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
- @ref: 7233
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.701 |
Isolation, sampling and environmental information
isolation
- @ref: 7233
- sample type: Steinernema species
- host species: Steinernema
- geographic location: Queensland, Mirani
- country: Australia
- origin.country: AUS
- continent: Australia and Oceania
isolation source categories
- Cat1: #Host
- Cat2: #Invertebrates (Other)
- Cat3: #Nematoda
Safety information
risk assessment
- @ref: 7233
- pathogenicity animal: yes
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 7233
- description: Xenorhabdus miraniensis strain Q1 16S ribosomal RNA gene, partial sequence
- accession: DQ211713
- length: 1481
- database: ena
- NCBI tax ID: 351674
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Xenorhabdus miraniensis DSM 17902 | GCA_002632615 | scaffold | ncbi | 351674 |
66792 | Xenorhabdus miraniensis strain DSM 17902 | 351674.5 | wgs | patric | 351674 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
flagellated | yes | 56.215 | no |
gram-positive | no | 98.078 | no |
anaerobic | no | 97.646 | no |
aerobic | yes | 87.419 | no |
halophile | no | 86.876 | no |
spore-forming | no | 93.572 | no |
glucose-util | yes | 92.439 | no |
thermophile | no | 98.482 | no |
motile | yes | 86.96 | no |
glucose-ferment | yes | 86.428 | no |
External links
@ref: 7233
culture collection no.: DSM 17902, CIP 109069
straininfo link
- @ref: 74690
- straininfo: 297373
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 17158981 | New insight into diversity in the genus Xenorhabdus, including the description of ten novel species. | Tailliez P, Pages S, Ginibre N, Boemare N | Int J Syst Evol Microbiol | 10.1099/ijs.0.64287-0 | 2006 | Animals, Bacterial Typing Techniques, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Molecular Sequence Data, Phenotype, RNA, Ribosomal, 16S, Rhabditida/classification/*microbiology, Sequence Analysis, DNA, *Symbiosis, Xenorhabdus/*classification/genetics | Genetics |
Phylogeny | 23456807 | Description of Xenorhabdus khoisanae sp. nov., the symbiont of the entomopathogenic nematode Steinernema khoisanae. | Ferreira T, van Reenen CA, Endo A, Sproer C, Malan AP, Dicks LMT | Int J Syst Evol Microbiol | 10.1099/ijs.0.049049-0 | 2013 | Animals, Bacterial Typing Techniques, DNA, Bacterial/genetics, Genes, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhabditida/*microbiology, Sequence Analysis, DNA, South Africa, Xenorhabdus/*classification/genetics/isolation & purification | Genetics |
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
7233 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17902) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-17902 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
74690 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID297373.1 | StrainInfo: A central database for resolving microbial strain identifiers |