Strain identifier

BacDive ID: 5198

Type strain: Yes

Species: Xenorhabdus miraniensis

Strain Designation: Q1

Strain history: <- P. Tailliez; Q1 <- N. E. Boemare <- R. Akhurst

NCBI tax ID(s): 351674 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 7233

BacDive-ID: 5198

DSM-Number: 17902

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile, animal pathogen

description: Xenorhabdus miraniensis Q1 is a mesophilic, motile animal pathogen that was isolated from Steinernema species.

NCBI tax id

  • NCBI tax id: 351674
  • Matching level: species

strain history

  • @ref: 7233
  • history: <- P. Tailliez; Q1 <- N. E. Boemare <- R. Akhurst

doi: 10.13145/bacdive5198.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Morganellaceae
  • genus: Xenorhabdus
  • species: Xenorhabdus miraniensis
  • full scientific name: Xenorhabdus miraniensis Tailliez et al. 2006

@ref: 7233

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Morganellaceae

genus: Xenorhabdus

species: Xenorhabdus miraniensis

full scientific name: Xenorhabdus miraniensis Tailliez et al. 2006

strain designation: Q1

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes98.118
6948099.976negative

Culture and growth conditions

culture medium

  • @ref: 7233
  • name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/535
  • composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

  • @ref: 7233
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.701

Isolation, sampling and environmental information

isolation

  • @ref: 7233
  • sample type: Steinernema species
  • host species: Steinernema
  • geographic location: Queensland, Mirani
  • country: Australia
  • origin.country: AUS
  • continent: Australia and Oceania

isolation source categories

  • Cat1: #Host
  • Cat2: #Invertebrates (Other)
  • Cat3: #Nematoda

Safety information

risk assessment

  • @ref: 7233
  • pathogenicity animal: yes
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 7233
  • description: Xenorhabdus miraniensis strain Q1 16S ribosomal RNA gene, partial sequence
  • accession: DQ211713
  • length: 1481
  • database: ena
  • NCBI tax ID: 351674

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Xenorhabdus miraniensis DSM 17902GCA_002632615scaffoldncbi351674
66792Xenorhabdus miraniensis strain DSM 17902351674.5wgspatric351674

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedyes56.215no
gram-positiveno98.078no
anaerobicno97.646no
aerobicyes87.419no
halophileno86.876no
spore-formingno93.572no
glucose-utilyes92.439no
thermophileno98.482no
motileyes86.96no
glucose-fermentyes86.428no

External links

@ref: 7233

culture collection no.: DSM 17902, CIP 109069

straininfo link

  • @ref: 74690
  • straininfo: 297373

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17158981New insight into diversity in the genus Xenorhabdus, including the description of ten novel species.Tailliez P, Pages S, Ginibre N, Boemare NInt J Syst Evol Microbiol10.1099/ijs.0.64287-02006Animals, Bacterial Typing Techniques, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Genes, rRNA, Molecular Sequence Data, Phenotype, RNA, Ribosomal, 16S, Rhabditida/classification/*microbiology, Sequence Analysis, DNA, *Symbiosis, Xenorhabdus/*classification/geneticsGenetics
Phylogeny23456807Description of Xenorhabdus khoisanae sp. nov., the symbiont of the entomopathogenic nematode Steinernema khoisanae.Ferreira T, van Reenen CA, Endo A, Sproer C, Malan AP, Dicks LMTInt J Syst Evol Microbiol10.1099/ijs.0.049049-02013Animals, Bacterial Typing Techniques, DNA, Bacterial/genetics, Genes, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rhabditida/*microbiology, Sequence Analysis, DNA, South Africa, Xenorhabdus/*classification/genetics/isolation & purificationGenetics

Reference

@idauthorscataloguedoi/urltitle
7233Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17902)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17902
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
74690Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID297373.1StrainInfo: A central database for resolving microbial strain identifiers