Strain identifier

BacDive ID: 5186

Type strain: Yes

Species: Xenorhabdus nematophila subsp. poinarii

Strain Designation: G1

Strain history: CIP <- 1991, DSMZ, Xenorhabdus nematophilus subsp. poinarii <- Queensland Univ., Australia: strain G1

NCBI tax ID(s): 40577 (species)

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General

@ref: 1815

BacDive-ID: 5186

DSM-Number: 4768

keywords: 16S sequence, Bacteria, mesophilic

description: Xenorhabdus nematophila subsp. poinarii G1 is a mesophilic bacterium that was isolated from nematode Steinernema glaseri.

NCBI tax id

  • NCBI tax id: 40577
  • Matching level: species

strain history

@refhistory
1815<- UQM
121923CIP <- 1991, DSMZ, Xenorhabdus nematophilus subsp. poinarii <- Queensland Univ., Australia: strain G1

doi: 10.13145/bacdive5186.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Morganellaceae
  • genus: Xenorhabdus
  • species: Xenorhabdus nematophila subsp. poinarii
  • full scientific name: Xenorhabdus nematophila subsp. poinarii corrig. Akhurst 1983

  • synonyms

    @refsynonym
    20215Xenorhabdus nematophilus subsp. poinarii
    20215Xenorhabdus poinarii

@ref: 1815

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Morganellaceae

genus: Xenorhabdus

species: Xenorhabdus poinarii

full scientific name: Xenorhabdus poinarii (Akhurst 1983) Akhurst and Boemare 1993

strain designation: G1

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1815XENORHABDUS MEDIUM (DSMZ Medium 423)yeshttps://mediadive.dsmz.de/medium/423Name: XENORHABDUS MEDIUM (DSMZ Medium 423) Composition: Agar 15.0 g/l Peptone 10.0 g/l NaCl 5.0 g/l Yeast extract 5.0 g/l Distilled water
1815CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
35547MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
36926MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
121923CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
1815positivegrowth30mesophilic
35547positivegrowth25mesophilic
36926positivegrowth25mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836917128adipate-assimilation
6836924265gluconate+assimilation
6836917306maltose+assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin+hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369gelatinase+
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
1815--+/----+-+-+-+++--+/-+-+/-
1815--++--+-+-+-++++-++--

Isolation, sampling and environmental information

isolation

@refsample typehost species
1815nematode Steinernema glaseriSteinernema glaseri
121923Animal, Associated with Steinernema (syn. Neoaplectana) glaseri and an undescribed Steinernema sp., isolate NC513

isolation source categories

  • Cat1: #Host
  • Cat2: #Invertebrates (Other)
  • Cat3: #Nematoda

taxonmaps

  • @ref: 69479
  • File name: preview.99_2215.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_27;97_1420;98_1728;99_2215&stattab=map
  • Last taxonomy: Xenorhabdus
  • 16S sequence: X82253
  • Sequence Identity:
  • Total samples: 31
  • soil counts: 13
  • aquatic counts: 4
  • animal counts: 12
  • plant counts: 2

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
18151Risk group (German classification)
1219231Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Xenorhabdus poinarii gene for 16S rRNA, partial sequence, strain: DSM 4768D780101476ena40577
20218X.poinarii 16S rRNA gene (DSM 4768)X822531498ena40577

External links

@ref: 1815

culture collection no.: DSM 4768, ATCC 35272, UQM 2216, CIP 103468

straininfo link

  • @ref: 74678
  • straininfo: 40962

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1815Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4768)https://www.dsmz.de/collection/catalogue/details/culture/DSM-4768
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
35547Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15269
36926Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6852
68369Automatically annotated from API 20NE
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
74678Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID40962.1StrainInfo: A central database for resolving microbial strain identifiers
121923Curators of the CIPCollection of Institut Pasteur (CIP 103468)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103468