Strain identifier
BacDive ID: 5183
Type strain: 
Species: Trabulsiella odontotermitis
Strain history: <- LMG <- W.-M. Chen, Natl. Kaohsiung Marine Univ. Taiwan
NCBI tax ID(s): 379893 (species)
version 8.1 (current version)
General
@ref: 16398
BacDive-ID: 5183
DSM-Number: 22557
keywords: 16S sequence, Bacteria, mesophilic
description: Trabulsiella odontotermitis DSM 22557 is a mesophilic bacterium that was isolated from gut of the termite Odontotermes formosanus Shiraki collected under decaying bamboo tree.
NCBI tax id
- NCBI tax id: 379893
- Matching level: species
strain history
- @ref: 16398
- history: <- LMG <- W.-M. Chen, Natl. Kaohsiung Marine Univ. Taiwan
doi: 10.13145/bacdive5183.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Trabulsiella
- species: Trabulsiella odontotermitis
- full scientific name: Trabulsiella odontotermitis Chou et al. 2007
@ref: 16398
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Enterobacteriaceae
genus: Trabulsiella
species: Trabulsiella odontotermitis
full scientific name: Trabulsiella odontotermitis Chou et al. 2007
type strain: yes
Culture and growth conditions
culture medium
- @ref: 16398
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 16398
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 16398
- sample type: gut of the termite Odontotermes formosanus Shiraki collected under decaying bamboo tree
- host species: Odontotermes formosanus
- geographic location: Southern Taiwan, Pingtung County
- country: Taiwan
- origin.country: TWN
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Arthropoda | #Insecta |
| #Host Body-Site | #Gastrointestinal tract | #Stomach |
taxonmaps
- @ref: 69479
- File name: preview.99_3924.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_7;98_2279;99_3924&stattab=map
- Last taxonomy: Enterobacteriaceae
- 16S sequence: DQ453129
- Sequence Identity:
- Total samples: 1388
- soil counts: 12
- aquatic counts: 109
- animal counts: 1211
- plant counts: 56
Safety information
risk assessment
- @ref: 16398
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 16398
- description: Trabulsiella odontotermitis strain Eant 3-9 16S ribosomal RNA gene, partial sequence
- accession: DQ453129
- length: 1450
- database: ena
- NCBI tax ID: 379893
GC content
- @ref: 16398
- GC-content: 55.7
External links
@ref: 16398
culture collection no.: DSM 22557, BCRC 17577, LMG 23580, Eant 3-9
straininfo link
- @ref: 74675
- straininfo: 290801
literature
- topic: Phylogeny
- Pubmed-ID: 17392189
- title: Trabulsiella odontotermitis sp. nov., isolated from the gut of the termite Odontotermes formosanus Shiraki.
- authors: Chou JH, Chen WM, Arun AB, Young CC
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.64632-0
- year: 2007
- mesh: Animals, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Enterobacteriaceae/*classification/genetics, Gastrointestinal Tract/microbiology, Genes, rRNA, Isoptera/*microbiology, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 16398 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22557) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-22557 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 74675 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID290801.1 | StrainInfo: A central database for resolving microbial strain identifiers |