Strain identifier

BacDive ID: 5178

Type strain: Yes

Species: Tatumella punctata

Strain Designation: FERM P-5452, BD 876

Strain history: B. Kageyama SHS 2006.

NCBI tax ID(s): 399969 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 5123

BacDive-ID: 5178

DSM-Number: 13700

keywords: aerobe, Bacteria, 16S sequence, mesophilic

description: Tatumella punctata FERM P-5452 is an aerobe, mesophilic bacterium that was isolated from mandarin orange.

NCBI tax id

  • NCBI tax id: 399969
  • Matching level: species

strain history

doi: 10.13145/bacdive5178.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Erwiniaceae
  • genus: Tatumella
  • species: Tatumella punctata
  • full scientific name: Tatumella punctata (Kageyama et al. 1992) Brady et al. 2010
  • synonyms

    • @ref: 20215
    • synonym: Pantoea punctata

@ref: 5123

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Erwiniaceae

genus: Tatumella

species: Tatumella punctata

full scientific name: Tatumella punctata (Kageyama et al. 1992) Brady et al. 2010

strain designation: FERM P-5452, BD 876

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5123REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)yeshttps://bacmedia.dsmz.de/medium/1aName: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
35847MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)

culture temp

@refgrowthtypetemperaturerange
5123positivegrowth28mesophilic
35847positivegrowth25mesophilic
49943positivegrowth30mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 49943
  • oxygen tolerance: aerobe

compound production

  • @ref: 5123
  • compound: 2,5 diketo-D-gulonic acid

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
5123mandarin orangeJapanJPNAsia
49943Mandarin orangeJapanJPNAsia
67770Mandarin orangeJapanJPNAsia

isolation source categories

  • Cat1: #Host Body-Site
  • Cat2: #Plant
  • Cat3: #Fruit (Seed)

Safety information

risk assessment

  • @ref: 5123
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Pantoea punctata strain JCM 8885 16S ribosomal RNA gene, partial sequenceDQ8380971305ena399969
20218Pantoea punctata strain CIP 105598 16S ribosomal RNA gene, complete sequenceJN1753421527ena399969
5123Pantoea punctata strain DSM 13700 16S ribosomal RNA gene, partial sequenceFJ7563511505ena399969
5123Pantoea punctata strain LMG 22050 16S ribosomal RNA gene, partial sequenceEF6880061494ena399969

GC content

@refGC-contentmethod
512350.7
6777050.7high performance liquid chromatography (HPLC)
6777050.3high performance liquid chromatography (HPLC)

External links

@ref: 5123

culture collection no.: DSM 13700, ATCC 31626, CCUG 30159, CIP 105598, JCM 8885, LMG 22050, SHS 2006, BCRC 14443, CCM 4320, FERM P-5452, KCTC 12452, KCTC 2747, NCPPB 3820

straininfo link

@refpassport
20218http://www.straininfo.net/strains/108394
20218http://www.straininfo.net/strains/108392
20218http://www.straininfo.net/strains/140926
20218http://www.straininfo.net/strains/153671
20218http://www.straininfo.net/strains/108395
20218http://www.straininfo.net/strains/184391
20218http://www.straininfo.net/strains/370434

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny1581180Pantoea punctata sp. nov., Pantoea citrea sp. nov., and Pantoea terrea sp. nov. isolated from fruit and soil samples.Kageyama B, Nakae M, Yagi S, Sonoyama TInt J Syst Bacteriol10.1099/00207713-42-2-2031992Base Composition, Erwinia/classification/*isolation & purification/ultrastructure, Fruit/*microbiology, Gluconates/*metabolism, Microscopy, Electron, Nucleic Acid Hybridization, Phenotype, *Soil MicrobiologyPhenotype
Phylogeny19654354Transfer of Pantoea citrea, Pantoea punctata and Pantoea terrea to the genus Tatumella emend. as Tatumella citrea comb. nov., Tatumella punctata comb. nov. and Tatumella terrea comb. nov. and description of Tatumella morbirosei sp. nov.Brady CL, Venter SN, Cleenwerck I, Vandemeulebroecke K, De Vos P, Coutinho TAInt J Syst Evol Microbiol10.1099/ijs.0.012070-02009Bacterial Typing Techniques, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Enterobacteriaceae/*classification/genetics/isolation & purification, Fruit/microbiology, Molecular Sequence Data, Pantoea/*classification/genetics/isolation & purification, Phylogeny, RNA, Ribosomal, 16S/genetics, Soil MicrobiologyEnzymology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5123Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13700)https://www.dsmz.de/collection/catalogue/details/culture/DSM-13700
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
35847Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/17635
49943Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 30159)https://www.ccug.se/strain?id=30159
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/