Strain identifier

BacDive ID: 5176

Type strain: Yes

Species: Tatumella ptyseos

Strain Designation: H36

Strain history: CIP <- 1981, P.A.D. Grimont, Inst. Pasteur, Paris, France <- D.G. Hollis: strain H36

NCBI tax ID(s): 1005995 (strain), 82987 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 1900

BacDive-ID: 5176

DSM-Number: 5000

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative

description: Tatumella ptyseos H36 is a mesophilic, Gram-negative bacterium that was isolated from sputum.

NCBI tax id

NCBI tax idMatching level
1005995strain
82987species

strain history

@refhistory
1900<- ATCC <- D.G. Hollis and F.W. Hickman; H36
122041CIP <- 1981, P.A.D. Grimont, Inst. Pasteur, Paris, France <- D.G. Hollis: strain H36

doi: 10.13145/bacdive5176.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Erwiniaceae
  • genus: Tatumella
  • species: Tatumella ptyseos
  • full scientific name: Tatumella ptyseos Hollis et al. 1982

@ref: 1900

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Erwiniaceae

genus: Tatumella

species: Tatumella ptyseos

full scientific name: Tatumella ptyseos Hollis et al. 1982

strain designation: H36

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.946

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1900BHI MEDIUM (DSMZ Medium 215)yeshttps://mediadive.dsmz.de/medium/215Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
37745MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
122041CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
1900positivegrowth30mesophilic
37745positivegrowth30mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.885

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic location
1900sputum
46041Human sputumUSAUSANorth America
122041SputumUnited States of AmericaUSANorth AmericaBaltimore, Maryland

isolation source categories

  • Cat1: #Host Body Product
  • Cat2: #Fluids
  • Cat3: #Sputum

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
19002Risk group (German classification)
1220411Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Tatumella ptyseos 16S rRNA gene (strain DSM 5000)AJ2334371480ena1005995
1900Tatumella ptyseos strain LMG7888 16S ribosomal RNA gene, complete sequenceEU3447701494ena1005995

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Tatumella ptyseos ATCC 33301GCA_000439895contigncbi1005995
66792Tatumella ptyseos NCTC11468GCA_900478715completencbi82987
66792Tatumella ptyseos ATCC 33301GCA_000735525contigncbi1005995
66792Tatumella ptyseos ATCC 333011005995.3wgspatric1005995
66792Tatumella ptyseos ATCC 333011005995.4wgspatric1005995
66792Tatumella ptyseos strain NCTC1146882987.5completepatric82987
66792Tatumella ptyseos ATCC 333012671180926draftimg1005995
66792Tatumella ptyseos ATCC 333012588253799draftimg1005995

GC content

  • @ref: 1900
  • GC-content: 53.0-54.0

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno80.565no
gram-positiveno98.11no
anaerobicno99.234no
aerobicno65.838no
halophileno75.202no
spore-formingno96.397no
thermophileno99.153no
glucose-utilyes88.068no
motileyes82.501no
glucose-fermentyes86.731no

External links

@ref: 1900

culture collection no.: DSM 5000, ATCC 33301, LMG 7888, CCUG 14188, CECT 869, NCTC 11468, CIP 81.97

straininfo link

  • @ref: 74668
  • straininfo: 5022

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny7263854Tatumella ptyseos gen. nov., sp. nov., a member of the family Enterobacteriaceae found in clinical specimens.Hollis DG, Hickman FW, Fanning GR, Farmer JJ 3rd, Weaver RE, Brenner DJJ Clin Microbiol10.1128/jcm.14.1.79-88.19811981DNA, Bacterial/analysis, Drug Resistance, Microbial, Enterobacteriaceae/analysis/*classification/physiology, Enterobacteriaceae Infections/*microbiology, Humans, Nucleic Acid Hybridization, Sputum/microbiology, Terminology as TopicPathogenicity
Phylogeny25807976Tatumella saanichensis sp. nov., isolated from a cystic fibrosis patient.Tracz DM, Gilmour MW, Mabon P, Beniac DR, Hoang L, Kibsey P, Van Domselaar G, Tabor H, Westmacott GR, Corbett CR, Bernard KAInt J Syst Evol Microbiol10.1099/ijs.0.0002072015Adolescent, Bacterial Typing Techniques, Base Composition, British Columbia, Cystic Fibrosis/*microbiology, DNA, Bacterial/genetics, Enterobacteriaceae/*classification/genetics/isolation & purification, Fatty Acids/chemistry, Humans, Male, Molecular Sequence Data, Multilocus Sequence Typing, Nucleic Acid Hybridization/genetics, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Sputum/microbiologyPathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1900Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5000)https://www.dsmz.de/collection/catalogue/details/culture/DSM-5000
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
37745Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/11264
46041Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 14188)https://www.ccug.se/strain?id=14188
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
74668Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID5022.1StrainInfo: A central database for resolving microbial strain identifiers
122041Curators of the CIPCollection of Institut Pasteur (CIP 81.97)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2081.97