Strain identifier

BacDive ID: 5174

Type strain: Yes

Species: Shigella boydii

Strain Designation: P288

Culture col. no.: DSM 7532, ATCC 8700, CCUG 49022, CIP 82.50, NCTC 12985

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 3205

BacDive-ID: 5174

DSM-Number: 7532

keywords: mesophilic, aerobe, Bacteria, 16S sequence, genome sequence

description: Shigella boydii P288 is an aerobe, mesophilic bacterium of the family Enterobacteriaceae.

strain history: <- ATCC <- NCTC <- AMC (Shigella paradysenteriae) <- J. Boyd; P288

doi: 10.13145/bacdive5174.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Shigella
  • species: Shigella boydii
  • full scientific name: Shigella boydii Ewing 1949 (Approved Lists 1980)

@ref: 3205

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Shigella

species: Shigella boydii

full scientific name: Shigella boydii Ewing 1949

strain designation: P288

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3205CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium220.pdf
40739MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
3205positivegrowth37mesophilic
40739positivegrowth30mesophilic
58445positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 58445
  • oxygen tolerance: aerobe

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
3205---------+-++------+-

Isolation, sampling and environmental information

isolation

  • @ref: 3205
  • country: India
  • origin.country: IND
  • continent: Asia

Safety information

risk assessment

  • @ref: 3205
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Shigella boydii partial 16S rRNA gene, strain P288
  • accession: HF558388
  • length: 1515
  • database: ena
  • NCBI tax ID: 621

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Shigella boydii ATCC 8700GCA_002946735completencbi621
66792Shigella boydii ATCC 35964GCA_002950035completencbi621
66792Shigella boydii ATCC 49812GCA_002950135completencbi621
66792Shigella boydii 59-2708GCA_002949495completencbi621
66792Shigella boydii 59-248GCA_002949475completencbi621
66792Shigella boydii 83-578GCA_002949535completencbi621
66792Shigella boydii NCTC 9850GCA_002949175completencbi621
66792Shigella boydii ATCC BAA-1247GCA_002950275completencbi621
66792Shigella boydii ATCC 9210GCA_001027225completencbi621
66792Shigella boydii KCCM 41690GCA_007106565completencbi621
66792Shigella boydii 54-1621GCA_002949455completencbi621
66792Shigella boydii NCTC 9734GCA_002950355chromosomencbi621
66792Shigella boydii ATCC 12027GCA_002949955chromosomencbi621
66792Shigella boydii 80GCA_009738285chromosomencbi621
66792Shigella boydii DMB SH130GCA_003572535contigncbi621
66792Shigella boydii ATCC 35966GCA_002968175scaffoldncbi621
66792Shigella boydii ATCC 35965GCA_002968245scaffoldncbi621
66792Shigella boydii NCTC 9770GCA_002968145scaffoldncbi621
66792Shigella boydii NCTC8576GCA_900457245contigncbi621
66792Shigella boydii ECH+23GCA_002248245contigncbi621
66792Shigella boydii ECH+06GCA_002248875contigncbi621
66792Shigella boydii 1177_SBOYGCA_001060475scaffoldncbi621
66792Shigella boydii ECPSTH05GCA_002249045contigncbi621
66792Shigella boydii ECSW+11GCA_002247825contigncbi621
66792Shigella boydii GCID_CRE_0038GCA_003977345contigncbi621
66792Shigella boydii 37_SBOYGCA_001064675scaffoldncbi621
66792Shigella boydii ESBL-A16-4-1GCA_002205865contigncbi621
66792Shigella boydii 216GCA_004025385contigncbi621
66792Shigella boydii ESBL-W3-2GCA_002290485contigncbi621
66792Shigella boydii ESBL-A07-8-2GCA_002290405contigncbi621
66792Shigella boydii ECH+10GCA_002247435contigncbi621
66792Shigella boydii BCW_4868GCA_001933075scaffoldncbi621
66792Shigella boydii ECFood+03GCA_002317935contigncbi621
66792Shigella boydii 1146_SBOYGCA_001062045scaffoldncbi621
66792Shigella boydii 272_SBOYGCA_001076355scaffoldncbi621
66792Shigella boydii ESBL-T013GCA_002290435contigncbi621
66792Shigella boydii 260_SBOYGCA_001063095contigncbi621
66792Shigella boydii 1252_SBOYGCA_001060695scaffoldncbi621
66792Shigella boydii 1141_SBOYGCA_001061115scaffoldncbi621
66792Shigella boydii 600690GCA_001906135contigncbi621
66792Shigella boydii DMB SH20032GCA_003572455contigncbi621
66792Shigella boydii 100706GCA_001906365contigncbi621
66792Shigella boydii 600384GCA_001905915contigncbi621
66792Shigella boydii 1221_SBOYGCA_001061295contigncbi621
66792Shigella boydii 600746GCA_001905965contigncbi621
66792Shigella boydii DMB SH134GCA_003572355contigncbi621
66792Shigella boydii 600080GCA_001905975contigncbi621
66792Shigella boydii 603233GCA_001906345contigncbi621
66792Shigella boydii 602339_IIGCA_001906225contigncbi621
66792Shigella boydii BCW_4869GCA_001933015scaffoldncbi621
66792Shigella boydii 603150GCA_001906065contigncbi621
66792Shigella boydii 602682GCA_001906055contigncbi621
66792Shigella boydii DMB SH136GCA_003572305contigncbi621
66792Shigella boydii 102265GCA_001906435contigncbi621
66792Shigella boydii FC666GCA_002241885contigncbi621
66792Shigella boydii 602068GCA_001906025contigncbi621
66792Shigella boydii 100705GCA_001906385contigncbi621
66792Shigella boydii 102252GCA_001906425contigncbi621
66792Shigella boydii IBESS2GCA_902501695contigncbi621
66792Shigella boydii FC1642GCA_002735545contigncbi621
66792Shigella boydii 102309GCA_001906445contigncbi621
66792Shigella boydii 601294GCA_001906205contigncbi621
66792Shigella boydii DMB SH112GCA_003572575contigncbi621
66792Shigella boydii 600375GCA_001906145contigncbi621
66792Shigella boydii DMB SH121GCA_003572565contigncbi621
66792Shigella boydii 601143GCA_001906185contigncbi621
66792Shigella boydii 600710GCA_001905945contigncbi621
66792Shigella boydii 601276GCA_001905995contigncbi621
66792Shigella boydii DMB SH20247GCA_003572825contigncbi621
66792Shigella boydii 1220_SBOYGCA_001061275scaffoldncbi621
66792Shigella boydii 603210GCA_001906355contigncbi621
66792Shigella boydii 600657GCA_001906115contigncbi621
66792Shigella boydii 602385GCA_001906045contigncbi621
66792Shigella boydii 602404GCA_001906275contigncbi621
66792Shigella boydii 602573GCA_001906265contigncbi621
66792Shigella boydii DMB SH20248GCA_003573285contigncbi621
66792Shigella boydii DMB SH137GCA_003572525contigncbi621
66792Shigella boydii FC1676GCA_002735485contigncbi621
66792Shigella boydii G1227GCA_003336935scaffoldncbi621
66792Shigella boydii FC1717GCA_002735445contigncbi621
66792Shigella boydii DMB SH20008GCA_003572485contigncbi621
66792Shigella boydii FC1655GCA_002735535contigncbi621
66792Shigella boydii IBESS425GCA_902503745contigncbi621
66792Shigella boydii DMB SH131GCA_003572405contigncbi621
66792Shigella boydii DMB SH132GCA_003572335contigncbi621
66792Shigella boydii DMB SH129GCA_003572385contigncbi621
66792Shigella boydii DMB SH20139GCA_003572235contigncbi621
66792Shigella boydii DMB SH20140GCA_003572225contigncbi621
66792Shigella boydii DMB SH20138GCA_003573425contigncbi621
66792Shigella boydii 602144GCA_001906195contigncbi621
66792Shigella boydii DMB SH135GCA_003572325contigncbi621
66792Shigella boydii 600266GCA_001906105contigncbi621
66792Shigella boydii 602988GCA_001906285contigncbi621
66792Shigella boydii 603122GCA_001906295contigncbi621
66792Shigella boydii BS984GCA_002967205scaffoldncbi621
66792Shigella boydii NCTC 9733GCA_002950375completencbi621
66792Shigella boydii NCTC 9353GCA_002950315completencbi621
66792Shigella boydii DMB SH135GCA_002949895chromosomencbi621
66792Shigella boydii 192GCA_009738345chromosomencbi621
66792Shigella boydii 183GCA_009738325chromosomencbi621
66792Shigella boydii NCTC12985GCA_900457095contigncbi621
66792Shigella boydii 65-6310GCA_002968185scaffoldncbi621
66792Shigella boydii BS986GCA_002967135scaffoldncbi621
66792Shigella boydii strain 100705621.133wgspatric621
66792Shigella boydii strain 100706621.132wgspatric621
66792Shigella boydii strain 102252621.134wgspatric621
66792Shigella boydii strain 102265621.135wgspatric621
66792Shigella boydii strain 102309621.136wgspatric621
66792Shigella boydii strain 1141_SBOY621.89wgspatric621
66792Shigella boydii strain 1146_SBOY621.92wgspatric621
66792Shigella boydii strain 1169_SBOY621.86wgspatric621
66792Shigella boydii strain 1177_SBOY621.87wgspatric621
66792Shigella boydii strain 1220_SBOY621.90wgspatric621
66792Shigella boydii strain 1221_SBOY621.91wgspatric621
66792Shigella boydii strain 1235_SBOY621.93wgspatric621
66792Shigella boydii strain 1252_SBOY621.88wgspatric621
66792Shigella boydii strain 183621.316completepatric621
66792Shigella boydii strain 192621.315completepatric621
66792Shigella boydii strain 216621.279wgspatric621
66792Shigella boydii strain 260_SBOY621.94wgspatric621
66792Shigella boydii strain 272_SBOY621.105wgspatric621
66792Shigella boydii strain 298_SBOY621.104wgspatric621
66792Shigella boydii strain 37_SBOY621.98wgspatric621
66792Shigella boydii strain 384973621.272wgspatric621
66792Shigella boydii strain 425_SBOY621.99wgspatric621
66792Shigella boydii strain 426_SBOY621.95wgspatric621
66792Shigella boydii strain 435526621.273wgspatric621
66792Shigella boydii strain 482_SBOY621.100wgspatric621
66792Shigella boydii strain 524_SBOY621.103wgspatric621
66792Shigella boydii strain 534_SBOY621.96wgspatric621
66792Shigella boydii strain 54-1621621.215completepatric621
66792Shigella boydii strain 572039621.275wgspatric621
66792Shigella boydii strain 59-248621.216completepatric621
66792Shigella boydii strain 59-2708621.217completepatric621
66792Shigella boydii strain 598073621.274wgspatric621
66792Shigella boydii strain 600080621.112wgspatric621
66792Shigella boydii strain 600266621.118wgspatric621
66792Shigella boydii strain 600375621.121wgspatric621
66792Shigella boydii strain 600384621.109wgspatric621
66792Shigella boydii strain 600657621.119wgspatric621
66792Shigella boydii strain 600690621.120wgspatric621
66792Shigella boydii strain 600710621.110wgspatric621
66792Shigella boydii strain 600746621.111wgspatric621
66792Shigella boydii strain 601143621.122wgspatric621
66792Shigella boydii strain 601276621.113wgspatric621
66792Shigella boydii strain 601294621.124wgspatric621
66792Shigella boydii strain 602068621.114wgspatric621
66792Shigella boydii strain 602144621.123wgspatric621
66792Shigella boydii strain 602339_II621.125wgspatric621
66792Shigella boydii strain 602385621.115wgspatric621
66792Shigella boydii strain 602404621.127wgspatric621
66792Shigella boydii strain 602573621.126wgspatric621
66792Shigella boydii strain 602682621.116wgspatric621
66792Shigella boydii strain 602988621.128wgspatric621
66792Shigella boydii strain 603122621.129wgspatric621
66792Shigella boydii strain 603150621.117wgspatric621
66792Shigella boydii strain 603210621.131wgspatric621
66792Shigella boydii strain 603233621.130wgspatric621
66792Shigella boydii strain 60_SBOY621.97wgspatric621
66792Shigella boydii strain 617895621.277wgspatric621
66792Shigella boydii strain 625705621.276wgspatric621
66792Shigella boydii strain 65-6310621.232wgspatric621
66792Shigella boydii strain 775_SBOY621.101wgspatric621
66792Shigella boydii strain 80621.314completepatric621
66792Shigella boydii strain 812_SBOY621.102wgspatric621
66792Shigella boydii strain 83-578621.218completepatric621
66792Shigella boydii strain ATCC 12027621.220completepatric621
66792Shigella boydii strain ATCC 35964621.221completepatric621
66792Shigella boydii strain ATCC 35965621.233wgspatric621
66792Shigella boydii strain ATCC 35966621.231wgspatric621
66792Shigella boydii strain ATCC 49812621.222completepatric621
66792Shigella boydii strain ATCC 8700621.213completepatric621
66792Shigella boydii strain ATCC 9210621.85completepatric621
66792Shigella boydii strain ATCC BAA-1247621.223completepatric621
66792Shigella boydii strain BCW_4868621.139wgspatric621
66792Shigella boydii strain BCW_4869621.140wgspatric621
66792Shigella boydii strain BS984621.228wgspatric621
66792Shigella boydii strain BS986621.227wgspatric621
66792Shigella boydii strain C13621.178plasmidpatric621
66792Shigella boydii strain DMB SH112621.255wgspatric621
66792Shigella boydii strain DMB SH121621.254wgspatric621
66792Shigella boydii strain DMB SH129621.248wgspatric621
66792Shigella boydii strain DMB SH130621.253wgspatric621
66792Shigella boydii strain DMB SH131621.249wgspatric621
66792Shigella boydii strain DMB SH132621.246wgspatric621
66792Shigella boydii strain DMB SH134621.247wgspatric621
66792Shigella boydii strain DMB SH135621.219completepatric621
66792Shigella boydii strain DMB SH136621.245wgspatric621
66792Shigella boydii strain DMB SH137621.252wgspatric621
66792Shigella boydii strain DMB SH20008621.251wgspatric621
66792Shigella boydii strain DMB SH20032621.250wgspatric621
66792Shigella boydii strain DMB SH20138621.258wgspatric621
66792Shigella boydii strain DMB SH20139621.244wgspatric621
66792Shigella boydii strain DMB SH20140621.243wgspatric621
66792Shigella boydii strain DMB SH20247621.256wgspatric621
66792Shigella boydii strain DMB SH20248621.260wgspatric621
66792Shigella boydii strain ECCTRSRTH11621.157wgspatric621
66792Shigella boydii strain ECFood+03621.161wgspatric621
66792Shigella boydii strain ECH+05621.153wgspatric621
66792Shigella boydii strain ECH+06621.155wgspatric621
66792Shigella boydii strain ECH+10621.149wgspatric621
66792Shigella boydii strain ECH+23621.154wgspatric621
66792Shigella boydii strain ECPSTH05621.156wgspatric621
66792Shigella boydii strain ECSW+04621.150wgspatric621
66792Shigella boydii strain ECSW+09621.151wgspatric621
66792Shigella boydii strain ECSW+11621.152wgspatric621
66792Shigella boydii strain ESBL-A07-8-2621.167wgspatric621
66792Shigella boydii strain ESBL-A16-4-1621.166wgspatric621
66792Shigella boydii strain ESBL-T013621.168wgspatric621
66792Shigella boydii strain ESBL-W3-2621.169wgspatric621
66792Shigella boydii strain FC1642621.176wgspatric621
66792Shigella boydii strain FC1655621.175wgspatric621
66792Shigella boydii strain FC1676621.174wgspatric621
66792Shigella boydii strain FC1717621.177wgspatric621
66792Shigella boydii strain FC666621.148wgspatric621
66792Shigella boydii strain G1227621.241wgspatric621
66792Shigella boydii strain GCID_CRE_0038621.278wgspatric621
66792Shigella boydii strain IBESS2621.307wgspatric621
66792Shigella boydii strain IBESS425621.308wgspatric621
66792Shigella boydii strain KCCM 41690621.305completepatric621
66792Shigella boydii strain NCTC 9353621.224completepatric621
66792Shigella boydii strain NCTC 9733621.226completepatric621
66792Shigella boydii strain NCTC 9734621.225completepatric621
66792Shigella boydii strain NCTC 9770621.230wgspatric621
66792Shigella boydii strain NCTC 9850621.214completepatric621
66792Shigella boydii strain NCTC12985621.296wgspatric621
66792Shigella boydii strain NCTC8576621.297wgspatric621

External links

@ref: 3205

culture collection no.: DSM 7532, ATCC 8700, CCUG 49022, CIP 82.50, NCTC 12985

straininfo link

@refpassport
20218http://www.straininfo.net/strains/160905
20218http://www.straininfo.net/strains/94813

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3205Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 7532)https://www.dsmz.de/collection/catalogue/details/culture/DSM-7532
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40739Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/11322
58445Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 49022)https://www.ccug.se/strain?id=49022
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)