Strain identifier
BacDive ID: 5173
Type strain: 
Species: Shigella sonnei
Strain history: <- NCCP, National Culture Collection of Pathogens, Korea <- Jeju, Korea
NCBI tax ID(s): 624 (species)
version 8.1 (current version)
General
@ref: 18093
BacDive-ID: 5173
DSM-Number: 25715
keywords: Bacteria, mesophilic, human pathogen
description: Shigella sonnei DSM 25715 is a mesophilic human pathogen that was isolated from human stool.
NCBI tax id
- NCBI tax id: 624
- Matching level: species
strain history
- @ref: 18093
- history: <- NCCP, National Culture Collection of Pathogens, Korea <- Jeju, Korea
doi: 10.13145/bacdive5173.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Shigella
- species: Shigella sonnei
- full scientific name: Shigella sonnei (Levine 1920) Weldin 1927 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacterium sonnei
@ref: 18093
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Enterobacteriaceae
genus: Shigella
species: Shigella sonnei
full scientific name: Shigella sonnei (Levine 1920) Weldin 1927
type strain: no
Morphology
multimedia
- @ref: 18093
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_25715.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 18093
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 18093
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
compound production
| @ref | compound |
|---|---|
| 18093 | extended spectrum ß-lactamase ESBL |
| 18093 | ß glucuronidase |
observation
- @ref: 18093
- observation: not ESBL
Isolation, sampling and environmental information
isolation
- @ref: 18093
- sample type: human stool
- geographic location: Donam
- country: Republic of Korea
- origin.country: KOR
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
| #Host | #Human |
Safety information
risk assessment
- @ref: 18093
- pathogenicity human: yes
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
External links
@ref: 18093
culture collection no.: DSM 25715, NCCP 11768
straininfo link
- @ref: 74665
- straininfo: 407800
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 18093 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25715) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25715 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 74665 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID407800.1 | StrainInfo: A central database for resolving microbial strain identifiers |