Strain identifier

BacDive ID: 5163

Type strain: Yes

Species: Serratia grimesii

Strain Designation: 503

Strain history: CIP <- 1989, NCTC <- 1983, P.A.D. Grimont, Inst. Pasteur, Paris, France: strain 503 <- ATCC <- R.E. Buchanan, Enterobacter liquefaciens <- M. Grimes, Aerobacter lipolyticus

NCBI tax ID(s): 1218094 (strain), 82995 (species)

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General

@ref: 9105

BacDive-ID: 5163

DSM-Number: 30063

keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative, rod-shaped

description: Serratia grimesii 503 is a mesophilic, Gram-negative, rod-shaped bacterium of the family Yersiniaceae.

NCBI tax id

NCBI tax idMatching level
1218094strain
82995species

strain history

@refhistory
9105<- ATCC <- R.E. Buchanan (Enterobacter liquefaciens) <- M. Grimes (Aerobacter lipolyticus). Grimont 503
67770DSM 30063 <-- ATCC 14460 <-- R. E. Buchanan (Enterobacter liquefaciens) <-- M. Grimes (Aerobacter lipolyticus) Grimont 503.
119741CIP <- 1989, NCTC <- 1983, P.A.D. Grimont, Inst. Pasteur, Paris, France: strain 503 <- ATCC <- R.E. Buchanan, Enterobacter liquefaciens <- M. Grimes, Aerobacter lipolyticus

doi: 10.13145/bacdive5163.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Yersiniaceae
  • genus: Serratia
  • species: Serratia grimesii
  • full scientific name: Serratia grimesii Grimont et al. 1983

@ref: 9105

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Yersiniaceae

genus: Serratia

species: Serratia grimesii

full scientific name: Serratia grimesii Grimont et al. 1983

strain designation: 503

type strain: yes

Morphology

cell morphology

  • @ref: 119741
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
9105NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
41712MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
119741CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
9105positivegrowth30mesophilic
41712positivegrowth30mesophilic
67770positivegrowth30mesophilic

Physiology and metabolism

compound production

  • @ref: 9105
  • compound: L carnitine

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose+fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol+fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine-hydrolysis
6837418257ornithine+degradation
6837429016arginine-hydrolysis
6837425094lysine+degradation
6837416199urea-hydrolysis
6837418403L-arabitol-builds acid from
6837418024D-galacturonic acid-builds acid from
68374Potassium 5-ketogluconate+builds acid from
6837416899D-mannitol+builds acid from
6837417306maltose+builds acid from
6837415963ribitol-builds acid from
6837418394palatinose-builds acid from
6837415792malonate-assimilation
6837427897tryptophan-energy source
6837417634D-glucose+builds acid from
6837417992sucrose+builds acid from
6837430849L-arabinose+builds acid from
6837418333D-arabitol-builds acid from
6837427082trehalose+builds acid from
6837462345L-rhamnose-builds acid from
6837417268myo-inositol+builds acid from
6837417057cellobiose-builds acid from
6837430911sorbitol+builds acid from

metabolite production

@refChebi-IDmetaboliteproduction
6837435581indoleno
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-test
6837435581indole-
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68374L-aspartate arylamidase+3.4.11.21
68374alpha-maltosidase-
68374alpha-galactosidase+3.2.1.22
68374alpha-glucosidase+3.2.1.20
68374beta-galactosidase+3.2.1.23
68374N-acetyl-beta-glucosaminidase+3.2.1.52
68374beta-glucuronidase-3.2.1.31
68374beta-glucosidase+3.2.1.21
68374lipase+
68374urease-3.5.1.5
68374lysine decarboxylase+4.1.1.18
68374arginine dihydrolase-3.5.3.6
68374ornithine decarboxylase+4.1.1.17
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
46333+-++-------++++-++++-

API ID32E

@refODCADH ArgLDC LysURELARLGAT5KGLIPRPbeta GLUMANMALADOPLEbeta GURMNTINDbeta NAGbeta GALGLUSACLARADARLalpha GLUalpha GALTRERHAINOCELSORalphaMALAspA
46333+-+---++-+++-----+++++-+++-+-+-+

Isolation, sampling and environmental information

isolation

@refcountryorigin.countrycontinentsample type
41712FranceFRAEurope
67770Dairy product
119741FranceFRAEuropeFood, Cheese, Cheddar

taxonmaps

  • @ref: 69479
  • File name: preview.99_1313.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_106;97_324;98_1038;99_1313&stattab=map
  • Last taxonomy: Serratia
  • 16S sequence: AJ233430
  • Sequence Identity:
  • Total samples: 32155
  • soil counts: 4695
  • aquatic counts: 7179
  • animal counts: 15622
  • plant counts: 4659

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
91052Risk group (German classification)
1197411Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Serratia grimesii 16S rRNA gene (strain DSM 30063)AJ2334301495ena82995
20218Serratia grimesii LMG 7883 16S ribosomal RNA gene, partial sequenceAF2868681461ena82995
20218Serratia grimesii gene for 16S rRNA, partial sequence, strain: NBRC 13537AB6804281468ena82995

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Serratia grimesii NBRC 135371218094.3wgspatric1218094
66792Serratia grimesii strain NCTC1154382995.8wgspatric82995
66792Serratia grimesii NBRC 135372681812975draftimg1218094
67770Serratia grimesii NBRC 13537GCA_001590905contigncbi1218094
67770Serratia grimesii NCTC11543GCA_900456935contigncbi82995

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes91.033no
gram-positiveno97.926no
anaerobicno97.753no
aerobicyes89.609no
halophileno91.285no
spore-formingno95.857no
thermophileno99.464yes
glucose-utilyes94.426no
flagellatedno56.59no
glucose-fermentyes89.555yes

External links

@ref: 9105

culture collection no.: DSM 30063, ATCC 14460, IFO 13537, JCM 31911, NBRC 13537, NCTC 10422, CCUG 15721, CIP 103361, NCDC 446-68, BCRC 10767, CCM 4735, JCM 5910, KCTC 2923, LMG 7883, NCIMB 9321, NCTC 11543, NRRL B-4271, VTT E-011966, CDC 446-68

straininfo link

  • @ref: 74655
  • straininfo: 92427

literature

  • topic: Phylogeny
  • Pubmed-ID: 25563917
  • title: Hafnia psychrotolerans sp. nov., isolated from lake water.
  • authors: Gu Z, Liu Y, Shen L, Liu X, Xiao N, Jiao N, Liu H, Zhou Y, Zhang S
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.000049
  • year: 2015
  • mesh: Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Hafnia/*genetics/growth & development/isolation & purification, Lakes/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
9105Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 30063)https://www.dsmz.de/collection/catalogue/details/culture/DSM-30063
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
41712Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15150
46333Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 15721)https://www.ccug.se/strain?id=15721
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68374Automatically annotated from API ID32E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
74655Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID92427.1StrainInfo: A central database for resolving microbial strain identifiers
119741Curators of the CIPCollection of Institut Pasteur (CIP 103361)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103361