Strain identifier

BacDive ID: 5161

Type strain: Yes

Species: Serratia liquefaciens

Strain Designation: 866, 1284-57

Strain history: CIP <- 1988, P.A.D. Grimont, Inst. Pasteur, Paris, France: strain 866 <- CDC: strain 1284-57 <- M. Grimes

NCBI tax ID(s): 1346614 (strain), 614 (species)

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General

@ref: 1700

BacDive-ID: 5161

DSM-Number: 4487

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, motile, animal pathogen

description: Serratia liquefaciens 866 is an aerobe, mesophilic, motile animal pathogen that was isolated from Milk.

NCBI tax id

NCBI tax idMatching level
614species
1346614strain

strain history

@refhistory
1700<- ATCC; ATCC 27592 <- W. H. Ewing, CDC, Atlanta; CDC 57 <- M. Grimes;
120626CIP <- 1988, P.A.D. Grimont, Inst. Pasteur, Paris, France: strain 866 <- CDC: strain 1284-57 <- M. Grimes

doi: 10.13145/bacdive5161.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Yersiniaceae
  • genus: Serratia
  • species: Serratia liquefaciens
  • full scientific name: Serratia liquefaciens (Grimes and Hennerty 1931) Bascomb et al. 1971 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Aerobacter liquefaciens

@ref: 1700

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Yersiniaceae

genus: Serratia

species: Serratia liquefaciens

full scientific name: Serratia liquefaciens (Grimes and Hennerty 1931) Bascomb et al. 1971

strain designation: 866, 1284-57

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes98.618
6948099.978negative
120626yesnegativerod-shaped

multimedia

  • @ref: 1700
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_4487.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1700NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
37345MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
1700TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
1700COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
120626CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
1700positivegrowth30mesophilic
37345positivegrowth30mesophilic
45184positivegrowth26-30mesophilic
120626positivegrowth5-41

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
45184aerobe
120626facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.43

compound production

  • @ref: 1700
  • compound: FSH binding inhibitor (FSH=follicle stimulating hormone)

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate+builds acid from
68371Potassium 2-ketogluconate+builds acid from
68371gluconate+builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371turanose+builds acid from32528
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose+builds acid from16634
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose+builds acid from28053
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol+builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol+builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol+builds acid from17754
68368L-arabinose+fermentation30849
68368amygdalin+fermentation27613
68368melibiose+fermentation28053
68368sucrose+fermentation17992
68368L-rhamnose-fermentation62345
68368sorbitol+fermentation30911
68368myo-inositol+fermentation17268
68368D-mannitol+fermentation16899
68368D-glucose+fermentation17634
68368gelatin+hydrolysis5291
68368tryptophan-energy source27897
68368urea-hydrolysis16199
68368citrate+assimilation16947
68368ornithine+degradation18257
68368lysine+degradation25094
68368arginine-hydrolysis29016
120626citrate+carbon source16947
120626nitrate+reduction17632
120626nitrite-reduction16301
120626malonate-assimilation15792
120626sodium thiosulfate-builds gas from132112
120626glucose+degradation17234

antibiotic resistance

  • @ref: 120626
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideno
12062635581indoleno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole testmethylred-test
6836815688acetoin-
6836835581indole-
12062615688acetoin+
12062617234glucose+

enzymes

@refvalueactivityec
68368gelatinase+
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23
120626oxidase-
120626beta-galactosidase+3.2.1.23
120626alcohol dehydrogenase-1.1.1.1
120626gelatinase+
120626catalase+1.11.1.6
120626lysine decarboxylase+4.1.1.18
120626ornithine decarboxylase+4.1.1.17
120626urease-3.5.1.5

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
1700+-+++-----+++++-++++-
1700+-+++-----+++++-+++++
1700+-+++-----+++++-++++-

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
120626+--+++---++++---+++--+-++++/-+++++-+/-+---+/-++/------+++

Isolation, sampling and environmental information

isolation

  • @ref: 45184
  • sample type: Milk
  • sampling date: 1957
  • country: Ireland
  • origin.country: IRL
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host Body Product#Fluids#Milk
#Engineered#Food production#Dairy product

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
1700yes2Risk group (German classification)
1206261Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Serratia liquefaciens strain ATCC 12926 16S ribosomal RNA gene, partial sequenceFJ971876797ena614
20218Serratia liquefaciens partial 16S rRNA gene, strain CIP 103238TAJ3067251428ena614
20218Serratia liquefaciens gene for 16S ribosomal RNA, partial sequenceAB0047521438ena614

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Serratia liquefaciens ATCC 27592GCA_000422085completencbi1346614
66792Serratia liquefaciens ATCC 275921346614.25plasmidpatric1346614
66792Serratia liquefaciens ATCC 275921346614.3completepatric1346614
66792Serratia liquefaciens ATCC 275922563366574completeimg1346614

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes91.244no
flagellatedno51.71no
gram-positiveno98.399no
anaerobicno98.068yes
aerobicyes91.991yes
halophileno89.439no
spore-formingno96.524no
thermophileno99.406yes
glucose-utilyes95.536no
glucose-fermentyes91.082yes

External links

@ref: 1700

culture collection no.: DSM 4487, ATCC 27592, CDC 57, CCUG 9285, ATCC 12926, LMG 7884, CIP 103238, JCM 1245, NCIMB 12815

straininfo link

  • @ref: 74653
  • straininfo: 264354

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Metabolism17708516Profiling of N-acyl-homoserine lactones by liquid chromatography coupled with electrospray ionization and a hybrid quadrupole linear ion-trap and Fourier-transform ion-cyclotron-resonance mass spectrometry (LC-ESI-LTQ-FTICR-MS).Cataldi TR, Bianco G, Abate SJ Mass Spectrom10.1002/jms.127520084-Butyrolactone/*analogs & derivatives/chemistry, Acetylation, Bacterial Proteins/chemistry, Chromatography, Liquid/*methods, Serratia liquefaciens/metabolism, Spectrometry, Mass, Electrospray Ionization/*methods, Spectroscopy, Fourier Transform Infrared/*methods, Tandem Mass Spectrometry/*methodsProteome
23289858Growth of Serratia liquefaciens under 7 mbar, 0 degrees C, and CO2-enriched anoxic atmospheres.Schuerger AC, Ulrich R, Berry BJ, Nicholson WLAstrobiology10.1089/ast.2011.08112013*Atmospheric Pressure, Bacillus subtilis/growth & development, Carbon Dioxide/*administration & dosage, Desiccation, Escherichia coli/growth & development, Extraterrestrial Environment, Mars, Oxygen/*administration & dosage, Serratia liquefaciens/*growth & development
Genetics23950115Complete Genome Sequence of Serratia liquefaciens Strain ATCC 27592.Nicholson WL, Leonard MT, Fajardo-Cavazos P, Panayotova N, Farmerie WG, Triplett EW, Schuerger ACGenome Announc10.1128/genomeA.00548-132013
Metabolism30297913Transcriptomic responses of Serratia liquefaciens cells grown under simulated Martian conditions of low temperature, low pressure, and CO2-enriched anoxic atmosphere.Fajardo-Cavazos P, Morrison MD, Miller KM, Schuerger AC, Nicholson WLSci Rep10.1038/s41598-018-33140-42018Atmosphere/chemistry, Atmospheric Pressure, Carbon Dioxide/analysis/*metabolism, Cold Temperature, Exobiology, *Extraterrestrial Environment/chemistry, Gene Expression Regulation, Bacterial, *Mars, Serratia liquefaciens/*genetics/growth & development/metabolism, Signal Transduction, *TranscriptomeTranscriptome
Phylogeny31089912Serratia microhaemolytica sp. nov., isolated from an artificial lake in Southern China.Wang J, Zheng ML, Jiao JY, Wang WJ, Li S, Xiao M, Chen C, Qu PH, Li WJAntonie Van Leeuwenhoek10.1007/s10482-019-01273-92019Anaerobiosis, Bacterial Typing Techniques, Base Composition, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Fresh Water/microbiology, Hydrogen-Ion Concentration, Lakes/*microbiology, Locomotion, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Serratia/*classification/genetics/*isolation & purification/physiology, Sodium Chloride/metabolism, TemperatureTranscriptome
Genetics33134743Salt tolerance enhancement Of wheat (Triticum Asativium L) genotypes by selected plant growth promoting bacteria.Fathalla A, Abd El-Mageed AAIMS Microbiol10.3934/microbiol.20200162020

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1700Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4487)https://www.dsmz.de/collection/catalogue/details/culture/DSM-4487
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
37345Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15014
45184Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 9285)https://www.ccug.se/strain?id=9285
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68368Automatically annotated from API 20E
68371Automatically annotated from API 50CH acid
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
74653Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID264354.1StrainInfo: A central database for resolving microbial strain identifiers
120626Curators of the CIPCollection of Institut Pasteur (CIP 103238)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103238