Strain identifier
BacDive ID: 5160
Type strain: 
Species: Serratia rubidaea
Strain history: <- IMET (Serratia marcescens) <- Knoth, Serumwerk Oelzschau (Bacterium prodigiosum)
NCBI tax ID(s): 61652 (species)
version 8.1 (current version)
General
@ref: 12501
BacDive-ID: 5160
DSM-Number: 46275
keywords: genome sequence, Bacteria, mesophilic, motile, animal pathogen
description: Serratia rubidaea DSM 46275 is a mesophilic, motile animal pathogen of the family Yersiniaceae.
NCBI tax id
- NCBI tax id: 61652
- Matching level: species
strain history
- @ref: 12501
- history: <- IMET (Serratia marcescens) <- Knoth, Serumwerk Oelzschau (Bacterium prodigiosum)
doi: 10.13145/bacdive5160.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Yersiniaceae
- genus: Serratia
- species: Serratia rubidaea
- full scientific name: Serratia rubidaea (Stapp 1940) Ewing et al. 1973 (Approved Lists 1980)
synonyms
@ref synonym 20215 Bacterium rubidaeum 20215 Serratia marinorubra
@ref: 12501
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Yersiniaceae
genus: Serratia
species: Serratia rubidaea
full scientific name: Serratia rubidaea (Stapp 1940) Ewing et al. 1973
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 98.165 | |
| 69480 | 99.925 | negative |
Culture and growth conditions
culture medium
- @ref: 12501
- name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
- growth: yes
- link: https://mediadive.dsmz.de/medium/220
- composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
culture temp
- @ref: 12501
- growth: positive
- type: growth
- temperature: 25
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.464 |
Safety information
risk assessment
- @ref: 12501
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Serratia rubidaea strain FDAARGOS_880
- accession: 61652.35
- assembly level: complete
- database: patric
- NCBI tax ID: 61652
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| gram-positive | no | 98.196 | no |
| anaerobic | no | 98.038 | no |
| halophile | no | 87.291 | no |
| spore-forming | no | 95.409 | no |
| glucose-util | yes | 94.917 | no |
| thermophile | no | 99.256 | yes |
| flagellated | yes | 51.435 | no |
| aerobic | yes | 85.944 | no |
| motile | yes | 91.646 | no |
| glucose-ferment | yes | 91.88 | no |
External links
@ref: 12501
culture collection no.: DSM 46275, IMET 10855, SG 583
straininfo link
- @ref: 74652
- straininfo: 50792
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 12501 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46275) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-46275 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 74652 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID50792.1 | StrainInfo: A central database for resolving microbial strain identifiers |