Strain identifier

BacDive ID: 5157

Type strain: Yes

Species: Serratia proteamaculans

Strain Designation: 3630

Strain history: CIP <- 1988, P.A.D. Grimont, Inst. Pasteur, Paris, France: strain 3630

NCBI tax ID(s): 28151 (species)

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General

@ref: 1724

BacDive-ID: 5157

DSM-Number: 4543

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped, animal pathogen

description: Serratia proteamaculans 3630 is an aerobe, mesophilic, Gram-negative animal pathogen of the family Yersiniaceae.

NCBI tax id

  • NCBI tax id: 28151
  • Matching level: species

strain history

@refhistory
1724<- ATCC <- NCPPB (Xanthomonas proteamaculans) <- NCTC <- S. Paine
411311988, P.A.D. Grimont, Inst. Pasteur, Paris, France: strain 3630
121967CIP <- 1988, P.A.D. Grimont, Inst. Pasteur, Paris, France: strain 3630

doi: 10.13145/bacdive5157.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Yersiniaceae
  • genus: Serratia
  • species: Serratia proteamaculans
  • full scientific name: Serratia proteamaculans (Paine and Stansfield 1919) Grimont et al. 1978 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Pseudomonas proteamaculans

@ref: 1724

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Yersiniaceae

genus: Serratia

species: Serratia proteamaculans subsp. proteamaculans

full scientific name: Serratia proteamaculans subsp. proteamaculans (Paine and Stansfield 1919) Grimont et al. 1983

strain designation: 3630

type strain: yes

Morphology

cell morphology

  • @ref: 121967
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1724COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
1724TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
41131MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
121967CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
121967CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
1724positivegrowth30mesophilic
41131positivegrowth30mesophilic
46122positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
46122aerobe
121967facultative anaerobe

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate+builds acid from
68371Potassium 2-ketogluconate+builds acid from
68371gluconate+builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose+builds acid from32528
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371raffinose+builds acid from16634
68371melezitose+builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose+builds acid from17992
68371melibiose+builds acid from28053
68371maltose+builds acid from17306
68371salicin+builds acid from17814
68371esculin+builds acid from4853
68371arbutin+builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside+builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol+builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol+builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol+builds acid from17754
68368L-arabinose+fermentation30849
68368amygdalin+fermentation27613
68368sucrose+fermentation17992
68368L-rhamnose-fermentation62345
68368myo-inositol+fermentation17268
68368D-mannitol+fermentation16899
68368D-glucose+fermentation17634
68368tryptophan-energy source27897
68368urea-hydrolysis16199
68368citrate+assimilation16947
68368ornithine+degradation18257
68368arginine-hydrolysis29016
121967nitrate+reduction17632
121967nitrite-reduction16301
68374ornithine+degradation18257
68374arginine-hydrolysis29016
68374lysine-degradation25094
68374urea-hydrolysis16199
68374L-arabitol-builds acid from18403
68374D-galacturonic acid-builds acid from18024
68374Potassium 5-ketogluconate+builds acid from
68374D-mannitol+builds acid from16899
68374maltose-builds acid from17306
68374ribitol-builds acid from15963
68374palatinose-builds acid from18394
68374malonate-assimilation15792
68374tryptophan-energy source27897
68374D-glucose+builds acid from17634
68374sucrose+builds acid from17992
68374L-arabinose+builds acid from30849
68374D-arabitol-builds acid from18333
68374trehalose+builds acid from27082
68374L-rhamnose-builds acid from62345
68374myo-inositol+builds acid from17268
68374cellobiose-builds acid from17057
68374sorbitol-builds acid from30911

metabolite production

@refChebi-IDmetaboliteproduction
6837435581indoleno
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno
12196735581indoleno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-test
6837435581indole-
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382cystine arylamidase-3.4.11.3
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382alkaline phosphatase+3.1.3.1
68374L-aspartate arylamidase-3.4.11.21
68374alpha-maltosidase-
68374alpha-galactosidase+3.2.1.22
68374alpha-glucosidase-3.2.1.20
68374beta-galactosidase+3.2.1.23
68374N-acetyl-beta-glucosaminidase-3.2.1.52
68374beta-glucuronidase-3.2.1.31
68374beta-glucosidase+3.2.1.21
68374lipase-
68374urease-3.5.1.5
68374lysine decarboxylase-4.1.1.18
68374arginine dihydrolase-3.5.3.6
68374ornithine decarboxylase+4.1.1.17
68368cytochrome oxidase-1.9.3.1
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase+3.2.1.23
121967oxidase-
121967catalase+1.11.1.6
121967urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
46122-+---+----++-+-+-+--
121967-++--++-+-++-+-+++--

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
1724+-+/-++----++++++-++++-
46122+-+++----+-+++--+-++-

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
121967+--+++---++++---+++-++-++++/-++/-+++-+++/---+/-+------+++

API ID32E

@refODCADH ArgLDC LysURELARLGAT5KGLIPRPbeta GLUMANMALADOPLEbeta GURMNTINDbeta NAGbeta GALGLUSACLARADARLalpha GLUalpha GALTRERHAINOCELSORalphaMALAspA
46122+-----+-+++-------++++--++-+----

Isolation, sampling and environmental information

taxonmaps

  • @ref: 69479
  • File name: preview.99_1313.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_106;97_324;98_1038;99_1313&stattab=map
  • Last taxonomy: Serratia
  • 16S sequence: AJ233434
  • Sequence Identity:
  • Total samples: 32155
  • soil counts: 4695
  • aquatic counts: 7179
  • animal counts: 15622
  • plant counts: 4659

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
1724yes2Risk group (German classification)
1219671Risk group (French classification)

Sequence information

16S sequences

  • @ref: 1724
  • description: Serratia proteamaculans 16S rRNA gene (strain DSM 4543)
  • accession: AJ233434
  • length: 1502
  • database: ena
  • NCBI tax ID: 28151

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Serratia proteamaculans CCUG 14510GCA_008830365contigncbi28151
66792Serratia proteamaculans strain CCUG 1451028151.36wgspatric28151

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes91.067no
gram-positiveno98.065no
anaerobicno98.176yes
halophileno92.116no
spore-formingno95.838no
glucose-utilyes95.29no
flagellatedno54.691no
aerobicyes89.781yes
thermophileno99.54yes
glucose-fermentyes93.183yes

External links

@ref: 1724

culture collection no.: DSM 4543, ATCC 19323, NCPPB 245, NCTC 394, CCUG 14510, CIP 103236, ICPB XP176

straininfo link

  • @ref: 74649
  • straininfo: 92711

Reference

@idauthorscataloguedoi/urltitle
1724Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4543)https://www.dsmz.de/collection/catalogue/details/culture/DSM-4543
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
41131Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15011
46122Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 14510)https://www.ccug.se/strain?id=14510
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68368Automatically annotated from API 20E
68371Automatically annotated from API 50CH acid
68374Automatically annotated from API ID32E
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
74649Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID92711.1StrainInfo: A central database for resolving microbial strain identifiers
121967Curators of the CIPCollection of Institut Pasteur (CIP 103236)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103236