Strain identifier
BacDive ID: 5127
Type strain:
Species: Salmonella enterica subsp. arizonae
Strain history: CIP <- 1982, L. Le Minor, Inst. Pasteur, Paris, France: strain 409, Salmonella choleraesuis subsp. arizonae <- P.R. Edwards, CDC: strain DC5, Salmonella arizonae
NCBI tax ID(s): 59203 (subspecies)
General
@ref: 3566
BacDive-ID: 5127
DSM-Number: 9386
keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped
description: Salmonella enterica subsp. arizonae DSM 9386 is a facultative anaerobe, mesophilic, Gram-negative bacterium of the family Enterobacteriaceae.
NCBI tax id
- NCBI tax id: 59203
- Matching level: subspecies
strain history
@ref | history |
---|---|
3566 | <- ATCC <- NCTC (Arizona arizonae) |
67770 | R. Sakazaki <-- CIP 82.30 <-- L. Le Minor 409 <-- P. R. Edwards DC5. |
119048 | CIP <- 1982, L. Le Minor, Inst. Pasteur, Paris, France: strain 409, Salmonella choleraesuis subsp. arizonae <- P.R. Edwards, CDC: strain DC5, Salmonella arizonae |
doi: 10.13145/bacdive5127.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Salmonella
- species: Salmonella enterica subsp. arizonae
- full scientific name: Salmonella enterica subsp. arizonae (Borman 1957) Le Minor and Popoff 1987
synonyms
@ref synonym 20215 Salmonella arizonae 20215 Salmonella choleraesuis subsp. arizonae 20215 Paracolobactrum arizonae
@ref: 3566
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Enterobacteriaceae
genus: Salmonella
species: Salmonella enterica subsp. arizonae
full scientific name: Salmonella enterica subsp. arizonae (Borman 1957) Le Minor and Popoff 1987
type strain: yes
Morphology
cell morphology
- @ref: 119048
- gram stain: negative
- cell shape: rod-shaped
- motility: yes
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
3566 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
3566 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://mediadive.dsmz.de/medium/92 | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water |
37325 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
119048 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
3566 | positive | growth | 37 | mesophilic |
37325 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 37 | mesophilic |
119048 | positive | growth | 30-41 | |
119048 | no | growth | 5 | psychrophilic |
119048 | no | growth | 10 | psychrophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 119048
- oxygen tolerance: facultative anaerobe
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68368 | 30849 | L-arabinose | + | fermentation |
68368 | 27613 | amygdalin | - | fermentation |
68368 | 17992 | sucrose | - | fermentation |
68368 | 62345 | L-rhamnose | + | fermentation |
68368 | 30911 | sorbitol | + | fermentation |
68368 | 17268 | myo-inositol | - | fermentation |
68368 | 16899 | D-mannitol | + | fermentation |
68368 | 17634 | D-glucose | + | fermentation |
68368 | 27897 | tryptophan | - | energy source |
68368 | 16199 | urea | - | hydrolysis |
68368 | 16947 | citrate | + | assimilation |
68368 | 18257 | ornithine | + | degradation |
68368 | 25094 | lysine | + | degradation |
68368 | 29016 | arginine | + | hydrolysis |
119048 | 29864 | mannitol | + | fermentation |
119048 | 16947 | citrate | + | carbon source |
119048 | 17632 | nitrate | + | reduction |
119048 | 16301 | nitrite | - | reduction |
119048 | 15792 | malonate | + | assimilation |
119048 | 132112 | sodium thiosulfate | + | builds gas from |
119048 | 17234 | glucose | + | degradation |
antibiotic resistance
- @ref: 119048
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: yes
- is resistant: no
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | yes |
119048 | 35581 | indole | no |
metabolite tests
@ref | Chebi-ID | metabolite | indole test | voges-proskauer-test | methylred-test |
---|---|---|---|---|---|
68368 | 35581 | indole | - | ||
119048 | 15688 | acetoin | - | ||
119048 | 17234 | glucose | + |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | + | 3.2.1.23 |
68382 | alpha-galactosidase | + | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | + | |
68382 | esterase (C 4) | - | |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68368 | cytochrome oxidase | - | 1.9.3.1 |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | - | 3.5.1.5 |
68368 | ornithine decarboxylase | + | 4.1.1.17 |
68368 | lysine decarboxylase | + | 4.1.1.18 |
68368 | arginine dihydrolase | + | 3.5.3.6 |
68368 | beta-galactosidase | + | 3.2.1.23 |
119048 | oxidase | - | |
119048 | beta-galactosidase | + | 3.2.1.23 |
119048 | alcohol dehydrogenase | - | 1.1.1.1 |
119048 | gelatinase | - | |
119048 | catalase | + | 1.11.1.6 |
119048 | lysine decarboxylase | + | 4.1.1.18 |
119048 | ornithine decarboxylase | + | 4.1.1.17 |
119048 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
119048 | tryptophan deaminase | - | |
119048 | urease | - | 3.5.1.5 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
119048 | - | + | - | + | - | + | - | - | - | - | + | + | + | + | - | - | - | - | - | - |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
3566 | + | + | + | + | + | + | - | - | - | - | + | + | + | - | + | + | - | - | - | + | - |
3566 | + | + | + | + | + | + | - | - | - | + | - | + | + | - | + | + | - | + | - | + | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
119048 | + | + | + | + | + | - | + | - | - | + | + | - | - | + | + | - | - | + | - | + | + | + | - | + | + | - | - | - | - | - | - | + | - | + | - | - | + | - | - | - | - | - | - | + | + | - | - | - | - | + | + | - | - | + | + | - | - | - | - | + | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | + | + | - | + | + | - | - | + | - | - | + | + | + | + | + | + | + | + | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 3566
- geographic location: Arizona
- country: USA
- origin.country: USA
- continent: North America
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
3566 | 2 | Risk group (German classification) |
119048 | 2 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Salmonella enterica subsp. arizonae strain ATCC 13314 16S ribosomal RNA gene, partial sequence | AF008580 | 1491 | ena | 59203 |
20218 | Salmonella enterica subsp. arizonae strain DSM 9386 16S ribosomal RNA gene, partial sequence | EU014683 | 1438 | ena | 59203 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Salmonella enterica subsp. arizonae strain NCTC8297 | 59203.8 | wgs | patric | 59203 |
67770 | Salmonella enterica subsp. arizonae NCTC8297 | GCA_900456225 | contig | ncbi | 59203 |
67770 | Salmonella enterica subsp. arizonae CCUG 6322T | GCA_008692845 | contig | ncbi | 59203 |
66792 | Salmonella enterica subsp. arizonae CCUG6322 | GCA_016029385 | contig | ncbi | 59203 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
gram-positive | no | 98.532 | no |
anaerobic | no | 95.104 | no |
halophile | no | 90.225 | no |
spore-forming | no | 93.501 | no |
glucose-util | yes | 92.87 | no |
thermophile | no | 98.786 | yes |
flagellated | no | 53.848 | no |
aerobic | yes | 78.65 | no |
motile | yes | 90.458 | no |
glucose-ferment | yes | 93.136 | yes |
External links
@ref: 3566
culture collection no.: DSM 9386, ATCC 13314, CIP 8230, NCTC 8297, CCUG 6322, JCM 1654, BCRC 10742, CIP 82.30, KCTC 12398, LMG 10757
straininfo link
- @ref: 74619
- straininfo: 11113
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 29515231 | Streptosporangium minutum sp. nov., isolated from garden soil exposed to microwave radiation. | Le Roes-Hill M, Durrell K, Prins A, Meyers PR | J Antibiot (Tokyo) | 10.1038/s41429-018-0036-0 | 2018 | Actinomycetales/classification/genetics/*isolation & purification, Anti-Bacterial Agents/isolation & purification/pharmacology, DNA, Fungal/analysis, Databases, Genetic, Genotype, Microbial Sensitivity Tests, Microwaves, Sequence Analysis, DNA, Soil, *Soil Microbiology | Enzymology |
Phylogeny | 32375936 | Klebsiella indica sp. nov., isolated from the surface of a tomato. | Gujarati S, Chaudhari D, Hagir A, Khairnar M, Shouche Y, Rahi P | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004168 | 2020 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fruit/*microbiology, India, Klebsiella/*classification/isolation & purification, Lycopersicon esculentum/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Transcriptome |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
3566 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9386) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-9386 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
37325 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/11299 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68368 | Automatically annotated from API 20E | |||||
68382 | Automatically annotated from API zym | |||||
74619 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID11113.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
119048 | Curators of the CIP | Collection of Institut Pasteur (CIP 82.30) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2082.30 |