Strain identifier

BacDive ID: 5127

Type strain: Yes

Species: Salmonella enterica subsp. arizonae

Strain history: CIP <- 1982, L. Le Minor, Inst. Pasteur, Paris, France: strain 409, Salmonella choleraesuis subsp. arizonae <- P.R. Edwards, CDC: strain DC5, Salmonella arizonae

NCBI tax ID(s): 59203 (subspecies)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 3566

BacDive-ID: 5127

DSM-Number: 9386

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Salmonella enterica subsp. arizonae DSM 9386 is a facultative anaerobe, mesophilic, Gram-negative bacterium of the family Enterobacteriaceae.

NCBI tax id

  • NCBI tax id: 59203
  • Matching level: subspecies

strain history

@refhistory
3566<- ATCC <- NCTC (Arizona arizonae)
67770R. Sakazaki <-- CIP 82.30 <-- L. Le Minor 409 <-- P. R. Edwards DC5.
119048CIP <- 1982, L. Le Minor, Inst. Pasteur, Paris, France: strain 409, Salmonella choleraesuis subsp. arizonae <- P.R. Edwards, CDC: strain DC5, Salmonella arizonae

doi: 10.13145/bacdive5127.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Salmonella
  • species: Salmonella enterica subsp. arizonae
  • full scientific name: Salmonella enterica subsp. arizonae (Borman 1957) Le Minor and Popoff 1987
  • synonyms

    @refsynonym
    20215Salmonella arizonae
    20215Salmonella choleraesuis subsp. arizonae
    20215Paracolobactrum arizonae

@ref: 3566

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Salmonella

species: Salmonella enterica subsp. arizonae

full scientific name: Salmonella enterica subsp. arizonae (Borman 1957) Le Minor and Popoff 1987

type strain: yes

Morphology

cell morphology

  • @ref: 119048
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3566COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
3566TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
37325MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
119048CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
3566positivegrowth37mesophilic
37325positivegrowth30mesophilic
67770positivegrowth37mesophilic
119048positivegrowth30-41
119048nogrowth5psychrophilic
119048nogrowth10psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 119048
  • oxygen tolerance: facultative anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin-fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine+hydrolysis
11904829864mannitol+fermentation
11904816947citrate+carbon source
11904817632nitrate+reduction
11904816301nitrite-reduction
11904815792malonate+assimilation
119048132112sodium thiosulfate+builds gas from
11904817234glucose+degradation

antibiotic resistance

  • @ref: 119048
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

@refChebi-IDmetaboliteproduction
6836835581indoleno
6836816136hydrogen sulfideyes
11904835581indoleno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-testmethylred-test
6836835581indole-
11904815688acetoin-
11904817234glucose+

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase+3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)-
68382alkaline phosphatase+3.1.3.1
68368cytochrome oxidase-1.9.3.1
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23
119048oxidase-
119048beta-galactosidase+3.2.1.23
119048alcohol dehydrogenase-1.1.1.1
119048gelatinase-
119048catalase+1.11.1.6
119048lysine decarboxylase+4.1.1.18
119048ornithine decarboxylase+4.1.1.17
119048phenylalanine ammonia-lyase-4.3.1.24
119048tryptophan deaminase-
119048urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119048-+-+-+----++++------

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
3566++++++----+++-++---+-
3566++++++---+-++-++-+-+-

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
119048+++++-+--++--++--+-+++-++------+-+--+------++----++--++----++--------------+---++-++--+--++++++++-+

Isolation, sampling and environmental information

isolation

  • @ref: 3566
  • geographic location: Arizona
  • country: USA
  • origin.country: USA
  • continent: North America

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
35662Risk group (German classification)
1190482Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Salmonella enterica subsp. arizonae strain ATCC 13314 16S ribosomal RNA gene, partial sequenceAF0085801491ena59203
20218Salmonella enterica subsp. arizonae strain DSM 9386 16S ribosomal RNA gene, partial sequenceEU0146831438ena59203

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Salmonella enterica subsp. arizonae strain NCTC829759203.8wgspatric59203
67770Salmonella enterica subsp. arizonae NCTC8297GCA_900456225contigncbi59203
67770Salmonella enterica subsp. arizonae CCUG 6322TGCA_008692845contigncbi59203
66792Salmonella enterica subsp. arizonae CCUG6322GCA_016029385contigncbi59203

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveno98.532no
anaerobicno95.104no
halophileno90.225no
spore-formingno93.501no
glucose-utilyes92.87no
thermophileno98.786yes
flagellatedno53.848no
aerobicyes78.65no
motileyes90.458no
glucose-fermentyes93.136yes

External links

@ref: 3566

culture collection no.: DSM 9386, ATCC 13314, CIP 8230, NCTC 8297, CCUG 6322, JCM 1654, BCRC 10742, CIP 82.30, KCTC 12398, LMG 10757

straininfo link

  • @ref: 74619
  • straininfo: 11113

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny29515231Streptosporangium minutum sp. nov., isolated from garden soil exposed to microwave radiation.Le Roes-Hill M, Durrell K, Prins A, Meyers PRJ Antibiot (Tokyo)10.1038/s41429-018-0036-02018Actinomycetales/classification/genetics/*isolation & purification, Anti-Bacterial Agents/isolation & purification/pharmacology, DNA, Fungal/analysis, Databases, Genetic, Genotype, Microbial Sensitivity Tests, Microwaves, Sequence Analysis, DNA, Soil, *Soil MicrobiologyEnzymology
Phylogeny32375936Klebsiella indica sp. nov., isolated from the surface of a tomato.Gujarati S, Chaudhari D, Hagir A, Khairnar M, Shouche Y, Rahi PInt J Syst Evol Microbiol10.1099/ijsem.0.0041682020Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fruit/*microbiology, India, Klebsiella/*classification/isolation & purification, Lycopersicon esculentum/*microbiology, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3566Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9386)https://www.dsmz.de/collection/catalogue/details/culture/DSM-9386
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
37325Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/11299
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68382Automatically annotated from API zym
74619Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID11113.1StrainInfo: A central database for resolving microbial strain identifiers
119048Curators of the CIPCollection of Institut Pasteur (CIP 82.30)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2082.30