Strain identifier

BacDive ID: 5125

Type strain: Yes

Species: Salmonella bongori

Strain Designation: 1224.72

Strain history: CIP <- 1982, L. Le Minor, Inst. Pasteur, Paris, France: strain 1224.72, Salmonella choleraesuis subsp. bongori

NCBI tax ID(s): 54736 (species)

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General

@ref: 5159

BacDive-ID: 5125

DSM-Number: 13772

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Salmonella bongori 1224.72 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from human.

NCBI tax id

  • NCBI tax id: 54736
  • Matching level: species

strain history

@refhistory
5159<- CIP <- L. LeMinor, Institut Pasteur, Paris, France; 1224.72
398221982, L. Le Minor, Inst. Pasteur, Paris, France: strain 1224.72, Salmonella choleraesuissubsp. bongori
119041CIP <- 1982, L. Le Minor, Inst. Pasteur, Paris, France: strain 1224.72, Salmonella choleraesuis subsp. bongori

doi: 10.13145/bacdive5125.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Salmonella
  • species: Salmonella bongori
  • full scientific name: Salmonella bongori (Le Minor et al. 1985) Reeves et al. 1989

  • synonyms

    @refsynonym
    20215Salmonella choleraesuis subsp. bongori
    20215Salmonella enterica subsp. bongori

@ref: 5159

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Salmonella

species: Salmonella bongori

full scientific name: Salmonella bongori (Le Minor et al. 1985) Reeves et al. 1989

strain designation: 1224.72

type strain: yes

Morphology

cell morphology

  • @ref: 119041
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5159COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
5159TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
39822MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
119041CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
119041CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
5159positivegrowth30mesophilic
39822positivegrowth30mesophilic
49872positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 49872
  • oxygen tolerance: aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin-fermentation
6836828053melibiose+fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideyes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase+3.2.1.23

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    49872C12:03.712
    49872C13:00.413
    49872C14:01014
    49872C15:01.815
    49872C16:02416
    49872C17:00.517
    49872C14:0 2OH0.915.205
    49872C14:0 3OH/C16:1 ISO I8.915.485
    49872C16:1 ω7c18.815.819
    49872C17:0 CYCLO11.216.888
    49872C18:1 ω7c /12t/9t18.317.824
    49872C19:0 CYCLO ω8c0.818.9
    49872unknown 14.5030.714.503
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
5159++++++-----++-++-+-+-

Isolation, sampling and environmental information

isolation

  • @ref: 5159
  • sample type: human
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

  • Cat1: #Host
  • Cat2: #Human

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
51592Risk group (German classification)
1190412Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Salmonella bongori strain BR 1859 16S ribosomal RNA gene, partial sequenceAF0292271498ena54736
20218Salmonella bongori strain DSM 13772 16S ribosomal RNA gene, partial sequenceEU0146821443ena54736
20218Salmonella bongori strain DSM 13772 16S ribosomal RNA gene, partial sequenceHQ012016936ena54736

External links

@ref: 5159

culture collection no.: DSM 13772, ATCC 43975, CIP 82.33, CCUG 30042, NCTC 12419

straininfo link

  • @ref: 74617
  • straininfo: 42158

literature

  • topic: Phylogeny
  • Pubmed-ID: 18592734
  • title: Primers specific for the fimbrial major subunit gene stdA can be used to detect Salmonella enterica serovars.
  • authors: Chuang YC, Yang CH, Lin JH, Wang KC, Cheng CP, Yeh KS
  • journal: J Food Prot
  • DOI: 10.4315/0362-028x-71.6.1108
  • year: 2008
  • mesh: Animals, Colony Count, Microbial/methods, DNA Primers, DNA, Bacterial/*analysis, Fimbriae, Bacterial/*genetics, Food Contamination/analysis/prevention & control, *Food Microbiology, Gene Amplification, Humans, Phylogeny, Polymerase Chain Reaction/*methods/standards, Reproducibility of Results, Salmonella enterica/classification/genetics/*isolation & purification, Salmonella typhimurium/classification/genetics/isolation & purification, Sensitivity and Specificity, Species Specificity, Swine/microbiology
  • topic2: Biotechnology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5159Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13772)https://www.dsmz.de/collection/catalogue/details/culture/DSM-13772
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39822Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/11303
49872Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 30042)https://www.ccug.se/strain?id=30042
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
68368Automatically annotated from API 20E
74617Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID42158.1StrainInfo: A central database for resolving microbial strain identifiers
119041Curators of the CIPCollection of Institut Pasteur (CIP 82.33)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2082.33