Strain identifier
BacDive ID: 5125
Type strain:
Species: Salmonella bongori
Strain Designation: 1224.72
Culture col. no.: DSM 13772, ATCC 43975, CIP 82.33, CCUG 30042
General
@ref: 5159
BacDive-ID: 5125
DSM-Number: 13772
keywords: aerobe, Bacteria, 16S sequence, genome sequence, mesophilic
description: Salmonella bongori 1224.72 is an aerobe, mesophilic bacterium that was isolated from human.
strain history
doi: 10.13145/bacdive5125.20201210.5
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/proteobacteria
- domain: Bacteria
- phylum: Proteobacteria
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Salmonella
- species: Salmonella bongori
- full scientific name: Salmonella bongori (Le Minor et al. 1985) Reeves et al. 1989
synonyms
@ref synonym 20215 Salmonella enterica subsp. bongori 20215 Salmonella choleraesuis subsp. bongori
@ref: 5159
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Enterobacteriaceae
genus: Salmonella
species: Salmonella bongori
full scientific name: Salmonella bongori (Le Minor et al. 1985) Reeves et al. 1989
strain designation: 1224.72
type strain: yes
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
5159 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium693.pdf | |
5159 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium92.pdf | |
39822 | MEDIUM 3 - Columbia agar | yes | Columbia agar (39.000 g);distilled water (1000.000 ml) |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
5159 | positive | growth | 30 | mesophilic |
39822 | positive | growth | 30 | mesophilic |
49872 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 49872
- oxygen tolerance: aerobe
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 49872 C12:0 3.7 12 49872 C13:0 0.4 13 49872 C14:0 10 14 49872 C15:0 1.8 15 49872 C16:0 24 16 49872 C17:0 0.5 17 49872 C14:0 2OH 0.9 15.205 49872 C14:0 3OH/C16:1 ISO I 8.9 15.485 49872 C16:1 ω7c 18.8 15.819 49872 C17:0 CYCLO 11.2 16.888 49872 C18:1 ω7c /12t/9t 18.3 17.824 49872 C19:0 CYCLO ω8c 0.8 18.9 49872 unknown 14.503 0.7 14.503 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
5159 | + | + | + | + | + | + | - | - | - | - | - | + | + | - | + | + | - | + | - | + | - |
Isolation, sampling and environmental information
isolation
- @ref: 5159
- sample type: human
- country: USA
- origin.country: USA
- continent: North America
isolation source categories
- Cat1: #Host
- Cat2: #Human
Safety information
risk assessment
- @ref: 5159
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Salmonella bongori strain BR 1859 16S ribosomal RNA gene, partial sequence | AF029227 | 1498 | ena | 54736 |
20218 | Salmonella bongori strain DSM 13772 16S ribosomal RNA gene, partial sequence | EU014682 | 1443 | ena | 54736 |
20218 | Salmonella bongori strain DSM 13772 16S ribosomal RNA gene, partial sequence | HQ012016 | 936 | ena | 54736 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Salmonella bongori NCTC12419 | GCA_900635485 | complete | ncbi | 54736 |
66792 | Salmonella bongori 85-0051 | GCA_006113225 | complete | ncbi | 54736 |
66792 | Salmonella bongori 92-0238 | GCA_006051015 | complete | ncbi | 54736 |
66792 | Salmonella bongori CATO-2016 | GCA_002119365 | contig | ncbi | 54736 |
66792 | Salmonella bongori MGYG-HGUT-02496 | GCA_902387725 | contig | ncbi | 54736 |
66792 | Salmonella bongori BCW_1555 | GCA_002035475 | contig | ncbi | 54736 |
66792 | Salmonella bongori BCW_1556 | GCA_002035285 | contig | ncbi | 54736 |
66792 | Salmonella bongori UBA7988 | GCA_003522735 | scaffold | ncbi | 54736 |
66792 | Salmonella bongori UBA7989 | GCA_003521525 | scaffold | ncbi | 54736 |
66792 | Salmonella bongori UBA11429 | GCA_003448395 | scaffold | ncbi | 54736 |
66792 | Salmonella bongori UBA12264 | GCA_003497195 | scaffold | ncbi | 54736 |
66792 | Salmonella bongori UBA7987 | GCA_003521435 | scaffold | ncbi | 54736 |
66792 | Salmonella bongori UBA11430 | GCA_003452365 | scaffold | ncbi | 54736 |
66792 | Salmonella bongori strain BCW_1555 | 54736.6 | wgs | patric | 54736 |
66792 | Salmonella bongori strain BCW_1556 | 54736.5 | wgs | patric | 54736 |
66792 | Salmonella bongori strain CATO-2016 | 54736.7 | wgs | patric | 54736 |
66792 | Salmonella bongori strain MGYG-HGUT-02496 | 54736.18 | wgs | patric | 54736 |
66792 | Salmonella bongori strain NCTC12419 | 54736.17 | complete | patric | 54736 |
66792 | Salmonella bongori strain UBA11429 | 54736.10 | wgs | patric | 54736 |
66792 | Salmonella bongori strain UBA11430 | 54736.11 | wgs | patric | 54736 |
66792 | Salmonella bongori strain UBA12264 | 54736.12 | wgs | patric | 54736 |
66792 | Salmonella bongori strain UBA7987 | 54736.13 | wgs | patric | 54736 |
66792 | Salmonella bongori strain UBA7988 | 54736.15 | wgs | patric | 54736 |
66792 | Salmonella bongori strain UBA7989 | 54736.14 | wgs | patric | 54736 |
External links
@ref: 5159
culture collection no.: DSM 13772, ATCC 43975, CIP 82.33, CCUG 30042
straininfo link
@ref | passport |
---|---|
20218 | http://www.straininfo.net/strains/163836 |
20218 | http://www.straininfo.net/strains/113394 |
20218 | http://www.straininfo.net/strains/229659 |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
5159 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13772) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-13772 | |||
20215 | D.Gleim, M.Kracht, N.Weiss et. al. | http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html | Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
39822 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/11303 | ||||
49872 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 30042) | https://www.ccug.se/strain?id=30042 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) |