Strain identifier

BacDive ID: 5125

Type strain: Yes

Species: Salmonella bongori

Strain Designation: 1224.72

Culture col. no.: DSM 13772, ATCC 43975, CIP 82.33, CCUG 30042

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General

@ref: 5159

BacDive-ID: 5125

DSM-Number: 13772

keywords: aerobe, Bacteria, 16S sequence, genome sequence, mesophilic

description: Salmonella bongori 1224.72 is an aerobe, mesophilic bacterium that was isolated from human.

strain history

doi: 10.13145/bacdive5125.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Salmonella
  • species: Salmonella bongori
  • full scientific name: Salmonella bongori (Le Minor et al. 1985) Reeves et al. 1989

  • synonyms

    @refsynonym
    20215Salmonella enterica subsp. bongori
    20215Salmonella choleraesuis subsp. bongori

@ref: 5159

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Salmonella

species: Salmonella bongori

full scientific name: Salmonella bongori (Le Minor et al. 1985) Reeves et al. 1989

strain designation: 1224.72

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
5159COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium693.pdf
5159TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium92.pdf
39822MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)

culture temp

@refgrowthtypetemperaturerange
5159positivegrowth30mesophilic
39822positivegrowth30mesophilic
49872positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 49872
  • oxygen tolerance: aerobe

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    49872C12:03.712
    49872C13:00.413
    49872C14:01014
    49872C15:01.815
    49872C16:02416
    49872C17:00.517
    49872C14:0 2OH0.915.205
    49872C14:0 3OH/C16:1 ISO I8.915.485
    49872C16:1 ω7c18.815.819
    49872C17:0 CYCLO11.216.888
    49872C18:1 ω7c /12t/9t18.317.824
    49872C19:0 CYCLO ω8c0.818.9
    49872unknown 14.5030.714.503
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
5159++++++-----++-++-+-+-

Isolation, sampling and environmental information

isolation

  • @ref: 5159
  • sample type: human
  • country: USA
  • origin.country: USA
  • continent: North America

isolation source categories

  • Cat1: #Host
  • Cat2: #Human

Safety information

risk assessment

  • @ref: 5159
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Salmonella bongori strain BR 1859 16S ribosomal RNA gene, partial sequenceAF0292271498ena54736
20218Salmonella bongori strain DSM 13772 16S ribosomal RNA gene, partial sequenceEU0146821443ena54736
20218Salmonella bongori strain DSM 13772 16S ribosomal RNA gene, partial sequenceHQ012016936ena54736

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Salmonella bongori NCTC12419GCA_900635485completencbi54736
66792Salmonella bongori 85-0051GCA_006113225completencbi54736
66792Salmonella bongori 92-0238GCA_006051015completencbi54736
66792Salmonella bongori CATO-2016GCA_002119365contigncbi54736
66792Salmonella bongori MGYG-HGUT-02496GCA_902387725contigncbi54736
66792Salmonella bongori BCW_1555GCA_002035475contigncbi54736
66792Salmonella bongori BCW_1556GCA_002035285contigncbi54736
66792Salmonella bongori UBA7988GCA_003522735scaffoldncbi54736
66792Salmonella bongori UBA7989GCA_003521525scaffoldncbi54736
66792Salmonella bongori UBA11429GCA_003448395scaffoldncbi54736
66792Salmonella bongori UBA12264GCA_003497195scaffoldncbi54736
66792Salmonella bongori UBA7987GCA_003521435scaffoldncbi54736
66792Salmonella bongori UBA11430GCA_003452365scaffoldncbi54736
66792Salmonella bongori strain BCW_155554736.6wgspatric54736
66792Salmonella bongori strain BCW_155654736.5wgspatric54736
66792Salmonella bongori strain CATO-201654736.7wgspatric54736
66792Salmonella bongori strain MGYG-HGUT-0249654736.18wgspatric54736
66792Salmonella bongori strain NCTC1241954736.17completepatric54736
66792Salmonella bongori strain UBA1142954736.10wgspatric54736
66792Salmonella bongori strain UBA1143054736.11wgspatric54736
66792Salmonella bongori strain UBA1226454736.12wgspatric54736
66792Salmonella bongori strain UBA798754736.13wgspatric54736
66792Salmonella bongori strain UBA798854736.15wgspatric54736
66792Salmonella bongori strain UBA798954736.14wgspatric54736

External links

@ref: 5159

culture collection no.: DSM 13772, ATCC 43975, CIP 82.33, CCUG 30042

straininfo link

@refpassport
20218http://www.straininfo.net/strains/163836
20218http://www.straininfo.net/strains/113394
20218http://www.straininfo.net/strains/229659

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
5159Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13772)https://www.dsmz.de/collection/catalogue/details/culture/DSM-13772
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39822Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/11303
49872Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 30042)https://www.ccug.se/strain?id=30042
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)