Strain identifier

BacDive ID: 5119

Type strain: No

Species: Salmonella enterica

Strain history: <- K. E. Sanderson, Salmonella Genetic Stock Centre, Univ. of Calgary, Canada; SGSC 1412

NCBI tax ID(s): 28901 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 9.1 (current version):
version 9:
version 8.1:
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 9.1 (current version)

General

@ref: 7575

BacDive-ID: 5119

DSM-Number: 18522

keywords: genome sequence, Bacteria, Gram-negative

description: Salmonella enterica DSM 18522 is a Gram-negative bacterium of the family Enterobacteriaceae.

NCBI tax id

  • NCBI tax id: 28901
  • Matching level: species

strain history

  • @ref: 7575
  • history: <- K. E. Sanderson, Salmonella Genetic Stock Centre, Univ. of Calgary, Canada; SGSC 1412

doi: 10.13145/bacdive5119.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Salmonella
  • species: Salmonella enterica
  • full scientific name: Salmonella enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987

  • synonyms

    @refsynonym
    20215Bacillus typhi
    20215Bacillus typhimurium
    20215Bacillus enteritidis
    20215Bacillus choleraesuis
    20215Salmonella typhi
    20215Salmonella choleraesuis
    20215Salmonella paratyphi
    20215Salmonella typhimurium
    20215Salmonella enteritidis

@ref: 7575

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Salmonella

species: Salmonella enterica

full scientific name: Salmonella enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 100

Culture and growth conditions

culture medium

  • @ref: 7575
  • name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/545
  • composition: Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water

culture temp

  • @ref: 7575
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

spore formation

  • @ref: 69481
  • spore formation: no
  • confidence: 100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836830849L-arabinose+fermentation
6836827613amygdalin-fermentation
6836828053melibiose+fermentation
6836817992sucrose-fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol+fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
683685291gelatin-hydrolysis
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate+assimilation
6836818257ornithine+degradation
6836825094lysine+degradation
6836829016arginine+hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideyes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole-

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase-3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
7575-+++++-----+++++-+-+-

Safety information

risk assessment

  • @ref: 7575
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Salmonella enterica strain FDAARGOS_76828901.9760completepatric28901
66792Salmonella enterica strain FDAARGOS_92828901.13768completepatric28901
66792Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 strain LT2; SGSC 1412; ATCC 70072099287.209plasmidpatric99287

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesno100no
69480gram-positivegram-positivePositive reaction to Gram-stainingno100no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no94.507no
69480spore-formingspore-formingAbility to form endo- or exosporesno89.032no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno98no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no75.255no
69480flagellatedmotile2+Ability to perform flagellated movementyes76.528no

External links

@ref: 7575

culture collection no.: DSM 18522, ATCC 700720, SGSC 1412

phages

@refnamestrain numberlink
124042Salmonella phage P22 (Salmonella virus P22)DSM 18522https://phagedive.dsmz.de/strain/720
124042Salmonella phage Felix O1DSM 18522https://phagedive.dsmz.de/strain/721
124042Salmonella phage vB_SenS-PT-JD21DSM 18522https://phagedive.dsmz.de/strain/829

literature

topicPubmed-IDtitleauthorsjournalDOIyearmesh
Pathogenicity28463082Quantification of Transfer of Salmonella from Citrus Fruits to Peel, Edible Portion, and Gloved Hands during Hand Peeling.Jung J, Friedrich LM, Danyluk MD, Schaffner DWJ Food Prot10.4315/0362-028X.JFP-16-4232017*Citrus, *Citrus sinensis, Fruit/*microbiology, Humans, Salmonella typhimurium
31135183Evaluation of Methods for Inoculating Dry Powder Foods with Salmonella enterica, Enterococcus faecium, or Cronobacter sakazakii.Wiertzema JR, Borchardt C, Beckstrom AK, Dev K, Chen P, Chen C, Vickers Z, Feirtag J, Lee L, Ruan R, Baumler DJJ Food Prot10.4315/0362-028X.JFP-18-2842019

Reference

@idauthorscataloguedoi/urltitle
7575Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18522)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18522
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68368Automatically annotated from API 20E
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
124042Dr. Johannes Wittmann, Dr. Clara Rolland, Dr. Lorenz Reimer, Joaquim Sardàhttps://phagedive.dsmz.de/PhageDive