Archive BacDiveID:10.13145/bacdive5118.20250331.9.3

Strain identifier

BacDive ID: 5118

Type strain:

Species: Salmonella enterica

Strain Designation: K-1891

Strain history: CIP <- 1982, ATCC <- CDC: strain K-1891, Salmonella enteritidis

NCBI tax ID(s): 28901 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 6956

BacDive-ID: 5118

DSM-Number: 17420

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Salmonella enterica K-1891 is a facultative anaerobe, mesophilic, Gram-negative bacterium of the family Enterobacteriaceae.

NCBI tax id

NCBI tax id: 28901
Matching level: species

strain history

@ref	history
6956	<- R. Hammann; <- ATCC; ATCC 13076 <- CDC, Atlanta; CDC K-1891
119051	CIP <- 1982, ATCC <- CDC: strain K-1891, Salmonella enteritidis

doi: 10.13145/bacdive5118.20250331.9.3

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Gammaproteobacteria
order: Enterobacterales
family: Enterobacteriaceae
genus: Salmonella
species: Salmonella enterica
full scientific name: Salmonella enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987

synonyms

@ref	synonym
20215	Salmonella typhi
20215	Salmonella paratyphi
20215	Bacillus typhi
20215	Bacillus enteritidis
20215	Bacillus choleraesuis
20215	Salmonella choleraesuis
20215	Bacillus typhimurium
20215	Salmonella typhimurium
20215	Salmonella enteritidis

@ref: 6956

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Salmonella

species: Salmonella enterica subsp. enterica

full scientific name: Salmonella enterica subsp. enterica (ex Kauffmann and Edwards 1952) Le Minor and Popoff 1987

strain designation: K-1891

type strain: no

Morphology

cell morphology

@ref	gram stain	cell shape	motility	flagellum arrangement	confidence
119051	negative	rod-shaped	yes	peritrichous
125438	negative				100
125439	negative				97.2

Culture and growth conditions

culture medium

@ref	name	growth	link	composition
6956	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	yes	https://mediadive.dsmz.de/medium/693	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
6956	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	yes	https://mediadive.dsmz.de/medium/535	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
41852	MEDIUM 72- for trypto casein soja agar	yes		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
119051	CIP Medium 72	yes	https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@ref	growth	type	temperature
6956	positive	growth	37
41852	positive	growth	30
119051	positive	growth	30-41
119051	no	growth	5
119051	no	growth	10

Physiology and metabolism

oxygen tolerance

@ref: 119051
oxygen tolerance: facultative anaerobe

spore formation

@ref: 125439
spore formation: no
confidence: 93.5

metabolite utilization

@ref	Chebi-ID	metabolite	utilization activity	kind of utilization tested
119051	29864	mannitol	+	fermentation
119051	16947	citrate	+	carbon source
119051	17234	glucose	+	fermentation
119051	17716	lactose	-	fermentation
119051	17632	nitrate	+	reduction
119051	16301	nitrite	-	reduction
119051	132112	sodium thiosulfate	+	builds gas from
119051	17234	glucose	+	degradation
68368	30849	L-arabinose	+	fermentation
68368	27613	amygdalin	-	fermentation
68368	28053	melibiose	+	fermentation
68368	17992	sucrose	-	fermentation
68368	62345	L-rhamnose	+	fermentation
68368	30911	sorbitol	+	fermentation
68368	17268	myo-inositol	-	fermentation
68368	16899	D-mannitol	+	fermentation
68368	17634	D-glucose	+	fermentation
68368	5291	gelatin	-	hydrolysis
68368	27897	tryptophan	-	energy source
68368	16199	urea	-	hydrolysis
68368	16947	citrate	+	assimilation
68368	18257	ornithine	+	degradation
68368	25094	lysine	+	degradation
68368	29016	arginine	+	hydrolysis

antibiotic resistance

@ref: 119051
metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
is antibiotic: yes
is sensitive: yes
is resistant: no

metabolite production

@ref	Chebi-ID	metabolite	production
119051	35581	indole	no
68368	35581	indole	no
68368	16136	hydrogen sulfide	yes

metabolite tests

@ref	Chebi-ID	metabolite	voges-proskauer-test	methylred-test	indole test
119051	15688	acetoin	-
119051	17234	glucose		+
68368	35581	indole			-

enzymes

@ref	value	activity	ec
68382	alpha-fucosidase	-	3.2.1.51
68382	alpha-mannosidase	-	3.2.1.24
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52
68382	alpha-glucosidase	+	3.2.1.20
68382	beta-glucuronidase	-	3.2.1.31
68382	alpha-galactosidase	+	3.2.1.22
68382	beta-galactosidase	-	3.2.1.23
68382	naphthol-AS-BI-phosphohydrolase	+
68382	acid phosphatase	+	3.1.3.2
68382	alpha-chymotrypsin	-	3.4.21.1
68382	cystine arylamidase	+	3.4.11.3
68382	lipase (C 14)	-
68382	esterase lipase (C 8)	+
68382	alkaline phosphatase	+	3.1.3.1
68382	esterase (C 4)	+
119051	oxidase	-
119051	beta-galactosidase	-	3.2.1.23
119051	alcohol dehydrogenase	-	1.1.1.1
119051	gelatinase	-
119051	catalase	+	1.11.1.6
119051	lysine decarboxylase	+	4.1.1.18
119051	ornithine decarboxylase	+	4.1.1.17
119051	phenylalanine ammonia-lyase	-	4.3.1.24
119051	tryptophan deaminase	-
119051	urease	-	3.5.1.5
68368	gelatinase	-
68368	urease	-	3.5.1.5
68382	beta-glucosidase	-	3.2.1.21
68382	trypsin	-	3.4.21.4
68382	valine arylamidase	+
68382	leucine arylamidase	+	3.4.11.1
68368	cytochrome oxidase	-	1.9.3.1
68368	tryptophan deaminase	-	4.1.99.1
68368	ornithine decarboxylase	+	4.1.1.17
68368	lysine decarboxylase	+	4.1.1.18
68368	arginine dihydrolase	+	3.5.3.6
68368	beta-galactosidase	-	3.2.1.23

API zym

@ref	Control	Alkaline phosphatase	Esterase	Esterase Lipase	Lipase	Leucine arylamidase	Valine arylamidase	Cystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119051	-	+	+	+	-	+	+	+	-	-	+	+	+	-	-	+	-	-	-	-

API 20E

@ref	ONPG	ADH Arg	LDC Lys	ODC	CIT	H2S	URE	TDA Trp	IND	VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX
6956	-	+	+	+	+	+	-	-	-	-	-	+	+	-	+	+	-	+	-	+	-
6956	-	+	+	+	+	+	-	-	-	+	-	+	+	-	+	+	-	+	-	+	-
6956	-	+	+	+	+	+	-	-	-	+	-	+	+	-	+	+	-	+	-	+	-
6956	-	+	+	+	+	+	-	-	-	+	-	+	+	-	+	+	-	+	-	+	-

API biotype100

@ref	GLU	FRU	GAL	TRE	MNE	SBE	MEL	SAC	RAF	MTE	MAL	LAC	LTE	MbGa	MaGa	CEL	GEN	MbGu	ESC	RIB	ARA	XYL	PLE	RHA	FUC	MLZ	DARL	LARL	XLT	DUL	TAG	GLY	INO	MAN	MTL	TUR	SOR	ADO	HBG	LYX	ERY	MDG	3MDG	SAT	MUC	LTAT	DTAT	MTAT	DMLT	LMLT	CATE	TATE	TTE	CIT	GRT	GAT	2KG	5KG	TRY	NAG	GNT	PAC	PAT	pOBE	QAT	GTE	mOBE	BAT	PPAT	CMT	TGE	BET	PCE	ABT	HIN	LAT	CAP	CYT	HIS	SUC	FUM	GRE	GYT	AVT	ETN	TTN	GLN	ITA	3OBU	APT	GTT	PRO	DALA	LALA	SER	MNT	PROP	TYR	2KT
119051	+	+	+	+	+	-	+	-	-	+	+	-	-	-	+	-	-	+	-	+	+	+	-	+	+	-	-	-	-	+	-	+	-	+	-	-	+	-	-	-	-	-	-	+	+	+	+	+	+	+	+	-	+	+	+	-	-	+	-	+	+	-	-	-	-	+	+	-	-	-	-	-	-	-	-	+	-	-	-	+	+	-	+	-	-	-	+	+	-	+	+	+	+	+	+	-	+	-	-

Isolation, sampling and environmental information

isolation

@ref: 6956
country: USA
origin.country: USA
continent: North America

taxonmaps

@ref: 69479
File name: preview.99_9.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_7;97_7;98_8;99_9&stattab=map
Last taxonomy: Salmonella enterica
16S sequence: EU014687
Sequence Identity:
Total samples: 28103
soil counts: 1084
aquatic counts: 2005
animal counts: 23018
plant counts: 1996

Safety information

risk assessment

@ref	biosafety level	biosafety level comment
6956	2	Risk group (German classification)
119051	2	Risk group (French classification)

Sequence information

16S sequences

@ref	description	accession	length	database	NCBI tax ID
20218	Salmonella enterica subsp. enterica serovar Enteritidis strain ATCC 13076 16S ribosomal RNA gene, partial sequence	EU014687	1432	nuccore	149539
20218	16S rRNA {variable regions V3 to V6} [Salmonella enteritidis, ATCC 13076, Genomic, 659 nt]	S77744	659	nuccore	149539
124043	Salmonella enterica subsp. enterica serovar Enteritidis strain ATCC 13076 16S ribosomal RNA gene, partial sequence.	OQ915465	1443	nuccore	149539

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Salmonella enterica subsp. enterica serovar Enteritidis ATCC 13076	GCA_001643395	contig	ncbi	149539
66792	Salmonella enterica strain FDAARGOS_1066	28901.13773	complete	patric	28901
66792	Salmonella enterica subsp. enterica serovar Enteritidis strain ATCC 13076	149539.440	wgs	patric	149539
66792	Salmonella enteritidis ATCC 13076	2744054643	draft	img	149539

Genome-based predictions

predictions

@ref	model	trait	description	prediction	confidence	training_data
125438	gram-positive	gram-positive	Positive reaction to Gram-staining	no	100	no
125438	anaerobic	anaerobic	Ability to grow under anoxygenic conditions (including facultative anaerobes)	no	94.34	no
125438	spore-forming	spore-forming	Ability to form endo- or exospores	no	88.146	no
125438	aerobic	aerobic	Ability to grow under oxygenic conditions (including facultative aerobes)	no	75.931	yes
125438	thermophile	thermophilic	Ability to grow at temperatures above or equal to 45°C	no	98	no
125438	motile2+	flagellated	Ability to perform flagellated movement	yes	75.39	no
125439	BacteriaNet	spore_formation	Ability to form endo- or exospores	no	93.5
125439	BacteriaNet	motility	Ability to perform movement	yes	71.7
125439	BacteriaNet	gram_stain	Reaction to gram-staining	negative	97.2
125439	BacteriaNet	oxygen_tolerance	Oxygenic conditions needed for growth	aerobe	83.4

External links

@ref: 6956

culture collection no.: DSM 17420, ATCC 13076, DSM 9898, WDCM 00030, CDC K-1891, CIP 82.97, CCM 7189, NCTC 12694, LMG 10395, CECT 4300

straininfo link

@ref: 74611
straininfo: 4944

literature

topic	Pubmed-ID	title	authors	journal	DOI	year	mesh	topic2
Pathogenicity	9037706	D values of Salmonella enteritidis isolates and quality attributes of shell eggs and liquid whole eggs treated with irradiation.	Serrano LE, Murano EA, Shenoy K, Olson DG	Poult Sci	10.1093/ps/76.1.202	1997	Animals, Calorimetry/methods/veterinary, Dose-Response Relationship, Radiation, Egg Shell/microbiology/radiation effects, Egg Yolk/microbiology/radiation effects, Eggs/microbiology/radiation effects, Food Irradiation, Humans, Incidence, Poultry, Poultry Diseases/epidemiology/prevention & control/radiotherapy, Protein Denaturation, Salmonella Food Poisoning/prevention & control, Salmonella Infections, Animal/epidemiology/prevention & control/radiotherapy, Salmonella enteritidis/isolation & purification/radiation effects, Temperature	Enzymology
Biotechnology	14503713	Antimicrobial performance of alkaline ionic fluid (GC-100X) and its ability to remove Escherichia coli O157:H7 from the surface of tomatoes.	Kwon NH, Kim SH, Kim JY, Lim JY, Kim JM, Jung WK, Park KT, Bae WK, Noh KM, Choi JW, Hur J, Park YH	J Food Prot	10.4315/0362-028x-66.9.1604	2003	Chlorine/pharmacology, Colony Count, Microbial, Disinfectants/pharmacology, Escherichia coli O157/drug effects/growth & development, Food Microbiology, Hydrogen-Ion Concentration, Lycopersicon esculentum/*microbiology, Temperature, Time Factors, Treatment Outcome, Xylitol/pharmacology	Pathogenicity
Biotechnology	16082468	Inactivation of Staphylococcus aureus and Salmonella enteritidis in tryptic soy broth and caviar samples by high pressure processing.	Fioretto F, Cruz C, Largeteau A, Sarli TA, Demazeau G, El Moueffak A	Braz J Med Biol Res	10.1590/s0100-879x2005000800015	2005	Animals, Colony Count, Microbial, Fish Products/microbiology, Food Microbiology, Hydrostatic Pressure, Salmonella enteritidis/growth & development, Soybeans/microbiology, Staphylococcus aureus/*growth & development
Biotechnology	16335227	[Evaluation of the antimicrobial action of honey against Staphylococcus aureus, Staphylococcus epidermidis, Pseudomonas aeruginosa, Escherichia coli, Salmonella enteritidis, Listeria monocytogenes and Aspergillus niger. Evaluation of its microbiological charge].	Estrada H, Gamboa Mdel M, Arias ML, Chaves C	Arch Latinoam Nutr		2005	Anti-Bacterial Agents/pharmacology, Colony Count, Microbial, Food Microbiology, Gram-Negative Bacteria/drug effects, Gram-Positive Bacteria/drug effects, Honey/*microbiology, Microbial Sensitivity Tests	Pathogenicity
Biotechnology	17186655	Influence of commercial sanitizers on lipopolysaccharide production by Salmonella Enteritidis ATCC 13076.	Venter P, Abraham M, Lues JF, Ivanov I	J Food Prot	10.4315/0362-028x-69.12.2889	2006	Consumer Product Safety, Disinfectants/pharmacology, Food Contamination/analysis/prevention & control, Food Microbiology, Gas Chromatography-Mass Spectrometry, Humans, Lipopolysaccharides/biosynthesis/toxicity/ultrastructure, Molecular Weight, Salmonella enteritidis/drug effects/metabolism/pathogenicity, Sanitation	Pathogenicity
Biotechnology	18939742	Membrane damage and viability loss of Escherichia coli K-12 and Salmonella enteritidis in liquid egg by thermal death time disk treatment.	Ukuku DO, Jin T, Zhang H	J Food Prot	10.4315/0362-028x-71.10.1988	2008	Animals, Cell Membrane/pathology, Colony Count, Microbial, Consumer Product Safety, Dose-Response Relationship, Drug, Eggs/microbiology, Escherichia coli K12/growth & development, Food Contamination/prevention & control, Food Handling/methods, Food Microbiology, Food Preservation/methods, Hot Temperature, Humans, Salmonella enteritidis/*growth & development, Sodium Chloride/pharmacology, Time Factors	Stress
Enzymology	19256417	[Microbiological contamination and antimicrobial activity of cristalised cane sugar on some medically important microorganisms in Costa Rica].	Pujol V, Diaz J, Rodriguez E, Arias ML	Rev Biol Trop		2008	Anti-Bacterial Agents/pharmacology, Clostridium botulinum/isolation & purification, Costa Rica, Dietary Sucrose/pharmacology, Enterobacteriaceae/isolation & purification, Food Microbiology, Gram-Negative Bacteria/drug effects, Gram-Positive Bacteria/drug effects, Microbial Sensitivity Tests, Saccharum/chemistry/*microbiology	Phylogeny
Pathogenicity	19278342	Growth inhibition of pathogenic bacteria and some yeasts by selected essential oils and survival of L. monocytogenes and C. albicans in apple-carrot juice.	Irkin R, Korukluoglu M	Foodborne Pathog Dis	10.1089/fpd.2008.0195	2009	Anti-Infective Agents/pharmacology, Bacteria/drug effects/growth & development, Beverages/microbiology, Candida albicans/drug effects/growth & development, Citrus sinensis/chemistry, Cuminum/chemistry, Daucus carota/microbiology, Food Preservatives, Fruit/microbiology, Listeria monocytogenes/drug effects/growth & development, Malus/microbiology, Mentha/chemistry, Oils, Volatile/pharmacology, Origanum/chemistry, Syzygium/chemistry, Tea Tree Oil/chemistry, Thymus Plant/chemistry
Metabolism	19664551	Characterization of Lactobacillus spp. isolated from the feces of breast-feeding piglets.	Cho IJ, Lee NK, Hahm YT	J Biosci Bioeng	10.1016/j.jbiosc.2009.03.015	2009	Animals, Animals, Newborn, Anti-Infective Agents/pharmacology, Bacillus cereus/metabolism, Body Fluids/chemistry, DNA, Ribosomal/chemistry, Feces, Gastric Acid/chemistry, Hydrogen-Ion Concentration, Lactobacillus/metabolism, Listeria monocytogenes/metabolism, Microbial Sensitivity Tests, Probiotics/isolation & purification, RNA, Ribosomal, 16S/chemistry, Salmonella enterica/metabolism, Staphylococcus aureus/metabolism, Swine	Phylogeny
Phylogeny	20932084	Differentiation of Salmonella enteritidis isolates by fluorescent amplified fragment length polymorphism.	Kober MV, Abreu MB, Bogo MR, Ferreira CA, Oliveira SD	Foodborne Pathog Dis	10.1089/fpd.2010.0539	2010	Amplified Fragment Length Polymorphism Analysis/methods, Bacterial Typing Techniques/methods, Brazil, Electrophoresis, Gel, Pulsed-Field, Phylogeny, Polymorphism, Restriction Fragment Length/genetics, Salmonella enteritidis/*classification/genetics/isolation & purification	Enzymology
Pathogenicity	21624484	In vitro assay of the antimicrobial activity of kephir against bacterial and fungal strains.	Chifiriuc MC, Cioaca AB, Lazar V	Anaerobe	10.1016/j.anaerobe.2011.04.020	2011	Anti-Infective Agents/metabolism/pharmacology, Bacteria/drug effects/growth & development, Candida albicans/drug effects/growth & development, Dairy Products, Humans, Microbial Sensitivity Tests	Metabolism
Pathogenicity	22856578	Modulation of cell surface hydrophobicity and attachment of bacteria to abiotic surfaces and shrimp by Malaysian herb extracts.	Hui YW, Dykes GA	J Food Prot	10.4315/0362-028X.JFP-12-062	2012	Animals, Bacterial Adhesion/drug effects, Escherichia coli/physiology, Food Microbiology, Glass, Humans, Hydrophobic and Hydrophilic Interactions/drug effects, Penaeidae/microbiology, Plant Extracts/pharmacology, Pseudomonas aeruginosa/physiology, Salmonella enteritidis/physiology, Shellfish/*microbiology, Stainless Steel, Staphylococcus aureus/physiology, Surface Properties	Biotechnology
Cultivation	23001665	Inactivation of Salmonella enterica by UV-C light alone and in combination with mild temperatures.	Gayan E, Serrano MJ, Raso J, Alvarez I, Condon S	Appl Environ Microbiol	10.1128/AEM.02010-12	2012	Culture Media/chemistry, Hydrogen-Ion Concentration, Microbial Viability/radiation effects, Salmonella enteritidis/physiology/radiation effects, Salmonella typhimurium/physiology/radiation effects, Temperature, Ultraviolet Rays
Pathogenicity	23100346	Evaluation of a simple blood culture amplification and antigen detection method for diagnosis of Salmonella enterica serovar typhi bacteremia.	Castonguay-Vanier J, Davong V, Bouthasavong L, Sengdetka D, Simmalavong M, Seupsavith A, Dance DA, Baker S, Le Thi Phuong T, Vongsouvath M, Newton PN	J Clin Microbiol	10.1128/JCM.02360-12	2012	Adolescent, Adult, Aged, Aged, 80 and over, Antigens, Bacterial/analysis, Blood/microbiology, Child, Child, Preschool, Female, Humans, Infant, Infant, Newborn, Korea, Laos, Male, Middle Aged, Predictive Value of Tests, Prospective Studies, Salmonella typhi/isolation & purification, Sensitivity and Specificity, Typhoid Fever/diagnosis, Young Adult	Enzymology
Phylogeny	24272828	Isolation and identification of a new intracellular antimicrobial peptide produced by Paenibacillus alvei AN5.	Alkotaini B, Anuar N, Kadhum AA, Sani AA	World J Microbiol Biotechnol	10.1007/s11274-013-1558-z	2013	Antimicrobial Cationic Peptides/chemistry/isolation & purification/pharmacology, Chromatography, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Electrophoresis, Polyacrylamide Gel, Environmental Microbiology, Gram-Negative Bacteria/drug effects, Gram-Positive Bacteria/drug effects, Hydrogen-Ion Concentration, Malaysia, Microbial Sensitivity Tests, Molecular Sequence Data, Molecular Weight, Paenibacillus/classification/genetics/isolation & purification/metabolism, Protein Stability, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spectrum Analysis, Temperature	Enzymology
Pathogenicity	24988412	Biosynthesis of silver nanoparticles using lingonberry and cranberry juices and their antimicrobial activity.	Puiso J, Jonkuviene D, Macioniene I, Salomskiene J, Jasutiene I, Kondrotas R	Colloids Surf B Biointerfaces	10.1016/j.colsurfb.2014.05.001	2014	Anti-Infective Agents/pharmacology, Bacteria/drug effects, Beverages, Fungi/drug effects, Metal Nanoparticles/chemistry/ultrastructure, Microbial Sensitivity Tests, Particle Size, Silver/pharmacology, Solutions, Spectrometry, X-Ray Emission, Spectrophotometry, Ultraviolet, Vaccinium macrocarpon/chemistry, Vaccinium vitis-idaea/chemistry
Pathogenicity	25407657	Potential use of caprylic acid in broiler chickens: effect on Salmonella enteritidis.	Skrivanova E, Hovorkova P, Cermak L, Marounek M	Foodborne Pathog Dis	10.1089/fpd.2014.1833	2014	Animal Feed, Animals, Caprylates/therapeutic use, Cecum/microbiology, Chickens, Colony Count, Microbial, Crop, Avian/microbiology, Diet/veterinary, Male, Meat/microbiology, Salmonella Infections, Animal/prevention & control, Salmonella enteritidis/drug effects
Phylogeny	26305252	Bio-Control of Salmonella Enteritidis in Foods Using Bacteriophages.	Bao H, Zhang P, Zhang H, Zhou Y, Zhang L, Wang R	Viruses	10.3390/v7082847	2015	Animals, Bacterial Load, Bacteriolysis, Brassica rapa/microbiology, Chickens, Food Microbiology, Food Safety/methods, Host Specificity, Meat/microbiology, Microscopy, Electron, Transmission, Milk/microbiology, Myoviridae/classification/growth & development/isolation & purification/ultrastructure, Salmonella Phages/classification/growth & development/isolation & purification/ultrastructure, Salmonella enteritidis/physiology/*virology, Sewage/virology, Temperature, Time Factors, Virion/ultrastructure	Biotechnology
	26567310	Pectin and Xyloglucan Influence the Attachment of Salmonella enterica and Listeria monocytogenes to Bacterial Cellulose-Derived Plant Cell Wall Models.	Tan MS, Rahman S, Dykes GA	Appl Environ Microbiol	10.1128/AEM.02609-15	2015	Bacterial Adhesion, Cell Wall/chemistry/microbiology, Glucans/analysis, Listeria monocytogenes/physiology, Models, Biological, Pectins/analysis, Plant Cells/chemistry/microbiology, Salmonella enterica/physiology, Xylans/analysis
	26597594	Characterization and antimicrobial application of biosynthesized gold and silver nanoparticles by using Microbacterium resistens.	Wang C, Singh P, Kim YJ, Mathiyalagan R, Myagmarjav D, Wang D, Jin CG, Yang DC	Artif Cells Nanomed Biotechnol	10.3109/21691401.2015.1089253	2015	Actinobacteria/chemistry, Anti-Infective Agents/chemical synthesis/chemistry/pharmacology, Gold/chemistry, Metal Nanoparticles/chemistry, Silver/*chemistry
	27029316	Influence of Sterilized Human Fecal Extract on the Sensitivity of Salmonella enterica ATCC 13076 and Listeria monocytogenes ATCC 15313 to Enrofloxacin.	Ahn Y, Stuckey R, Sung K, Rafii F, Cerniglia CE	Antibiotics (Basel)	10.3390/antibiotics2040485	2013
	28286570	Strain-specific probiotic properties of lactic acid bacteria and their interference with human intestinal pathogens invasion.	Campana R, van Hemert S, Baffone W	Gut Pathog	10.1186/s13099-017-0162-4	2017
Pathogenicity	28287494	Synthetic Peptides Derived from Bovine Lactoferricin Exhibit Antimicrobial Activity against E. coli ATCC 11775, S. maltophilia ATCC 13636 and S. enteritidis ATCC 13076.	Huertas Mendez NJ, Vargas Casanova Y, Gomez Chimbi AK, Hernandez E, Leal Castro AL, Melo Diaz JM, Rivera Monroy ZJ, Garcia Castaneda JE	Molecules	10.3390/molecules22030452	2017	Amino Acid Sequence, Animals, Anti-Bacterial Agents/chemical synthesis/pharmacology, Cattle, Circular Dichroism, Escherichia coli/drug effects, Lactoferrin/chemistry, Microbial Sensitivity Tests, Molecular Structure, Peptides/chemical synthesis/pharmacology, Salmonella enteritidis/*drug effects
Pathogenicity	28561638	Mitigation of Salmonella on Pet Food Kibbles by Using Liquid and Powdered 3-Hydroxy-3-Methylbutyric Acid.	Huss AR, Fuller JC Jr, Centrella W, Marshall DL, Deliephan A, Jones CK	J Food Prot	10.4315/0362-028X.JFP-16-506	2017	Animals, Colony Count, Microbial, Dogs, Food Contamination/prevention & control, Food Handling/methods, Food Microbiology, Hemiterpenes, Humans, Pentanoic Acids, Salmonella enteritidis/drug effects/growth & development, Valerates/*pharmacology	Biotechnology
	29259829	Antibacterial Activity of Free Fatty Acids from Hydrolyzed Virgin Coconut Oil Using Lipase from Candida rugosa.	Nguyen VTA, Le TD, Phan HN, Tran LB	J Lipids	10.1155/2017/7170162	2017
Phylogeny	29887839	Isolation, Characterization, and Application of Bacteriophage LPSE1 Against Salmonella enterica in Ready to Eat (RTE) Foods.	Huang C, Virk SM, Shi J, Zhou Y, Willias SP, Morsy MK, Abdelnabby HE, Liu J, Wang X, Li J	Front Microbiol	10.3389/fmicb.2018.01046	2018
Pathogenicity	29945177	The antimicrobial spectrum of lysozyme broadened by reductive modification.	Liu J, Wang N, Liu Y, Jin Y, Ma M	Poult Sci	10.3382/ps/pey245	2018	Animals, Anti-Bacterial Agents/chemistry/pharmacology, Chickens, Disulfides/chemistry, Egg White/chemistry, Gram-Negative Bacteria/drug effects, Gram-Positive Bacteria/drug effects, Muramidase/chemistry/pharmacology, Oxidation-Reduction, Sulfites/chemistry
	30263701	Probiotic characterization of Bacillus subtilis P223 isolated from kimchi.	Jeon HL, Lee NK, Yang SJ, Kim WS, Paik HD	Food Sci Biotechnol	10.1007/s10068-017-0148-5	2017
Pathogenicity	30629172	Effect of sublethal concentrations of ceftriaxone on antibiotic susceptibility of multiple antibiotic-resistant Salmonella strains.	Zhou X, Zhang Z, Suo Y, Cui Y, Zhang F, Shi C, Shi X	FEMS Microbiol Lett	10.1093/femsle/fny283	2019	Anti-Bacterial Agents/pharmacology, Bacterial Proteins/genetics/metabolism, Ceftriaxone/pharmacology, Drug Resistance, Multiple, Bacterial, Humans, Microbial Sensitivity Tests, Salmonella Infections/microbiology, Salmonella typhimurium/*drug effects/genetics/metabolism	Metabolism
Pathogenicity	30978578	In vitro and in situ inhibition of some food-borne pathogens by essential oils from date palm (Phoenix dactylifera L.) spathe.	Al-Zoreky NS, Al-Taher AY	Int J Food Microbiol	10.1016/j.ijfoodmicro.2019.03.018	2019	Animals, Anti-Bacterial Agents/pharmacology, Bacteria/drug effects, Chickens, Escherichia coli/drug effects, Food Microbiology/methods, Gas Chromatography-Mass Spectrometry, Inhibitory Concentration 50, Listeria monocytogenes/drug effects, Meat/microbiology, Oils, Volatile/pharmacology, Phoeniceae/chemistry, Salmonella enteritidis/drug effects, Staphylococcus aureus/drug effects	Biotechnology
	31158999	A Flow-Injection System for Studying Heat Inactivation of Listeria monocytogenes and Salmonella enteritidis in Liquid Whole Egg.	Muriana PM, Hou H, Singh RK	J Food Prot	10.4315/0362-028X-59.2.121	1996
Phylogeny	31444521	Isolation and identification of new antibacterial compounds from Bacillus pumilus.	Chu J, Wang Y, Zhao B, Zhang XM, Liu K, Mao L, Kalamiyets E	Appl Microbiol Biotechnol	10.1007/s00253-019-10083-y	2019	Anti-Bacterial Agents/chemistry/isolation & purification, Bacillus pumilus/growth & development/metabolism, Chromatography, High Pressure Liquid, Culture Media/chemistry, Gram-Negative Bacteria/drug effects, Gram-Positive Bacteria/*drug effects, Magnetic Resonance Spectroscopy, Microbial Sensitivity Tests	Pathogenicity
Pathogenicity	31604155	Antagonistic trait of Lactobacillus reuteri S5 against Salmonella enteritidis and assessment of its potential probiotic characteristics.	Shi S, Qi Z, Sheng T, Tu J, Shao Y, Qi K	Microb Pathog	10.1016/j.micpath.2019.103773	2019	Animals, Antibiosis, Bacterial Proteins/genetics/metabolism, Biofilms/drug effects, Chickens, Lactobacillus reuteri/physiology, Poultry Diseases/drug therapy/microbiology, Probiotics/administration & dosage, Salmonella Infections, Animal/drug therapy/microbiology, Salmonella enteritidis/*drug effects/genetics/physiology	Metabolism
	31640162	The Optimization of Plasma-Activated Water Treatments to Inactivate Salmonella Enteritidis (ATCC 13076) on Shell Eggs.	Lin CM, Chu YC, Hsiao CP, Wu JS, Hsieh CW, Hou CY	Foods	10.3390/foods8100520	2019
	31881347	Proteomic analysis and antibacterial resistance mechanisms of Salmonella Enteritidis submitted to the inhibitory effect of Origanum vulgare essential oil, thymol and carvacrol.	Barbosa LN, Alves FCB, Andrade BFMT, Albano M, Rall VLM, Fernandes AAH, Buzalaf MAR, Leite AL, de Pontes LG, Dos Santos LD, Fernandes Junior A	J Proteomics	10.1016/j.jprot.2019.103625	2019	Anti-Bacterial Agents/pharmacology, Cymenes, Microbial Sensitivity Tests, Oils, Volatile/pharmacology, Origanum, Proteomics, Salmonella enteritidis, Thymol/pharmacology
Phylogeny	32169489	Characterization and whole-genome sequencing of broad-host-range Salmonella-specific bacteriophages for bio-control.	Li P, Zhang X, Xie X, Tu Z, Gu J, Zhang A	Microb Pathog	10.1016/j.micpath.2020.104119	2020	DNA, Viral/genetics, Microscopy, Electron, Transmission, Phylogeny, Salmonella Phages/*genetics/isolation & purification/pathogenicity/ultrastructure, Salmonella enteritidis/virology, Virulence, Whole Genome Sequencing	Genetics
Phylogeny	32405962	Probiotic Potential and Wide-spectrum Antimicrobial Activity of Lactic Acid Bacteria Isolated from Infant Feces.	Wang X, Wang W, Lv H, Zhang H, Liu Y, Zhang M, Wang Y, Tan Z	Probiotics Antimicrob Proteins	10.1007/s12602-020-09658-3	2021	Anti-Bacterial Agents/classification/isolation & purification/pharmacology, Bacillus subtilis/growth & development, Feces/microbiology, Humans, Infant, Lactobacillales/classification/isolation & purification, Micrococcus luteus/growth & development, Probiotics/classification/isolation & purification/pharmacology	Enzymology
Pathogenicity	32429030	An Endolysin LysSE24 by Bacteriophage LPSE1 Confers Specific Bactericidal Activity against Multidrug-Resistant Salmonella Strains.	Ding Y, Zhang Y, Huang C, Wang J, Wang X	Microorganisms	10.3390/microorganisms8050737	2020
	32512951	Antimicrobial Activity of Six International Artisanal Kefirs Against Bacillus cereus, Listeria monocytogenes, Salmonella enterica serovar Enteritidis, and Staphylococcus aureus.	Sindi A, Badsha MB, Nielsen B, Unlu G	Microorganisms	10.3390/microorganisms8060849	2020
	33077075	Antimicrobial and Antioxidant Activities of Two Medicinal Plants Cuphea aequipetala var. hispida (Cav.) Koehne and Eryngium comosum Delaroche F Against Bacteria Related to Equine Infections.	Alvarado TD, Mariezcurrena Berasain MD, Salem AZM, Pinzon Martinez DL	J Equine Vet Sci	10.1016/j.jevs.2020.103269	2020	Animals, Anti-Bacterial Agents/pharmacology, Anti-Infective Agents/pharmacology, Antioxidants/pharmacology, Bacteria, Cuphea, Eryngium, Escherichia coli, Horses, Microbial Sensitivity Tests/veterinary, Plant Extracts/pharmacology, Plants, Medicinal
	33086594	The Antibacterial Efficacy and Mechanism of Plasma-Activated Water Against Salmonella Enteritidis (ATCC 13076) on Shell Eggs.	Lin CM, Hsiao CP, Lin HS, Liou JS, Hsieh CW, Wu JS, Hou CY	Foods	10.3390/foods9101491	2020
	33304162	Probiotic characteristics of Lactobacillus strains isolated from cheese and their antibacterial properties against gastrointestinal tract pathogens.	Zhang X, Ali Esmail G, Fahad Alzeer A, Valan Arasu M, Vijayaraghavan P, Choon Choi K, Abdullah Al-Dhabi N	Saudi J Biol Sci	10.1016/j.sjbs.2020.10.022	2020
Phylogeny	33574871	Biofilm Production Potential of Salmonella Serovars Isolated from Chickens in North West Province, South Africa.	Akinola SA, Tshimpamba ME, Mwanza M, Ateba CN	Pol J Microbiol	10.33073/pjm-2020-046	2020	Animals, Bacterial Adhesion, Biofilms/growth & development, Chickens/microbiology, Culture Media, Food Microbiology, Salmonella/classification/isolation & purification/physiology, Salmonella enterica/classification/isolation & purification/physiology, Serogroup, South Africa, Temperature	Biotechnology
	33747702	Annulohypoxylon sp. strain MUS1, an endophytic fungus isolated from Taxus wallichiana Zucc., produces taxol and other bioactive metabolites.	Gauchan DP, Velez H, Acharya A, Ostman JR, Lunden K, Elfstrand M, Garcia-Gil MR	3 Biotech	10.1007/s13205-021-02693-z	2021
Pathogenicity	34437917	S-layer protein 2 of vaginal Lactobacillus crispatus 2029 enhances growth, differentiation, VEGF production and barrier functions in intestinal epithelial cell line Caco-2.	Abramov VM, Kosarev IV, Priputnevich TV, Machulin AV, Abashina TN, Chikileva IO, Donetskova AD, Takada K, Melnikov VG, Vasilenko RN, Khlebnikov VS, Samoilenko VA, Nikonov IN, Sukhikh GT, Uversky VN, Karlyshev AV	Int J Biol Macromol	10.1016/j.ijbiomac.2021.08.150	2021	Alkaline Phosphatase/genetics/metabolism, Bacterial Adhesion/drug effects, Caco-2 Cells, Cell Differentiation/drug effects, Cell Membrane Permeability/drug effects, Cell Proliferation/drug effects, Electric Impedance, Enterocytes/drug effects/metabolism, Female, Gene Expression Regulation, Enzymologic/drug effects, Humans, Lactase/genetics/metabolism, Lactobacillus crispatus/chemistry, Membrane Glycoproteins/pharmacology, RNA, Messenger/genetics/metabolism, Sucrase/genetics/metabolism, Vagina/microbiology, Vascular Endothelial Growth Factor A/biosynthesis	Metabolism
Pathogenicity	34641314	Bruguiera gymnorhiza (L.) Lam. at the Forefront of Pharma to Confront Zika Virus and Microbial Infections-An In Vitro and In Silico Perspective.	Bibi Sadeer N, Haddad JG, Oday Ezzat M, Despres P, Abdallah HH, Zengin G, Uysal A, El Kalamouni C, Gallo M, Montesano D, Mahomoodally MF	Molecules	10.3390/molecules26195768	2021	Anti-Bacterial Agents/chemistry/pharmacology, Antifungal Agents/chemistry/pharmacology, Antiviral Agents/chemistry/pharmacology, Brazil, Candida albicans/drug effects/growth & development, Computer Simulation, Drug Synergism, Escherichia coli/drug effects/growth & development, Klebsiella pneumoniae/drug effects/growth & development, Mauritius, Microbial Sensitivity Tests, Microbial Viability/drug effects, Plant Extracts/chemistry/pharmacology, Proteus mirabilis/drug effects/growth & development, Pseudomonas aeruginosa/drug effects/growth & development, Rhizophoraceae/chemistry, Staphylococcus aureus/drug effects/growth & development, Zika Virus/drug effects/growth & development
	34680772	Effect of Essential Oils on the Inhibition of Biofilm and Quorum Sensing in Salmonella enteritidis 13076 and Salmonella typhimurium 14028.	Guillin Y, Caceres M, Torres R, Stashenko E, Ortiz C	Antibiotics (Basel)	10.3390/antibiotics10101191	2021
	35088042	Effects of a dry acidulant addition to prevent Salmonella contamination in poultry feed.	Jeffrey AM, Aldrich GC, Huss AR, Knueven C, Jones CK, Zumbaugh CA	Transl Anim Sci	10.1093/tas/txab232	2022
	35145500	RW-BP100-4D, a Promising Antimicrobial Candidate With Broad-Spectrum Bactericidal Activity.	Tong X, Li J, Wei R, Gong L, Ji X, He T, Wang R	Front Microbiol	10.3389/fmicb.2021.815980	2022
Biotechnology	35525087	Sodium benzoate and sodium bisulfate as preservatives in apple juice and alternative sanitizers for washing cherry tomatoes.	Chen H, Brashears MM, Zhong Q	Int J Food Microbiol	10.1016/j.ijfoodmicro.2022.109697	2022	Colony Count, Microbial, Escherichia coli O157, Food Microbiology, Listeria monocytogenes, Lycopersicon esculentum/microbiology, Malus/microbiology, Sodium Benzoate/pharmacology, Sulfates
	35573802	Antagonistic activity and mechanism of Lactobacillus rhamnosus SQ511 against Salmonella enteritidis.	Shi S, Gong L, Yu H, He G, Zhang J, Han Y, Liu Y, Hu J, Dong J, Liu J, Zhao K, Zhou D	3 Biotech	10.1007/s13205-022-03176-5	2022

Reference

@id	authors	catalogue	doi/url	title	journal	pubmed
6956	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17420)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-17420
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.		10.1016/j.syapm.2013.11.002	StrainInfo introduces electronic passports for microorganisms.	Syst Appl Microbiol. 37: 42-50 2014	24321274
41852	Curators of the CIP		https://brclims.pasteur.fr/brcWeb/souche/detail/1/11373
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68368				Automatically annotated from API 20E
68382				Automatically annotated from API zym
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.		https://microbeatlas.org/	MicrobeAtlas 1.0 beta
74611	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID4944.1	StrainInfo: A central database for resolving microbial strain identifiers
119051	Curators of the CIP	Collection of Institut Pasteur (CIP 82.97)	https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2082.97
124043	Isabel Schober, Julia Koblitz			Data extracted from sequence databases, automatically matched based on designation and taxonomy
125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann		10.1101/2024.08.12.607695	Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy		https://github.com/GenomeNet/deepG	deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1