Strain identifier

BacDive ID: 5092

Type strain: Yes

Species: Providencia sneebia

Strain Designation: A

Strain history: DSM 19967 <-- B. Lazzaro strain A.

NCBI tax ID(s): 1141660 (strain), 516075 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 8412

BacDive-ID: 5092

DSM-Number: 19967

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped, animal pathogen

description: Providencia sneebia A is an aerobe, mesophilic, Gram-negative animal pathogen that was isolated from haemolymph of wild-caught Drosophila melanogaster fruit flies.

NCBI tax id

NCBI tax idMatching level
1141660strain
516075species

strain history

@refhistory
8412<- B. Lazzaro, Dept. Entomology, Cornell University
67770DSM 19967 <-- B. Lazzaro strain A.

doi: 10.13145/bacdive5092.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Morganellaceae
  • genus: Providencia
  • species: Providencia sneebia
  • full scientific name: Providencia sneebia Juneja and Lazzaro 2009

@ref: 8412

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Morganellaceae

genus: Providencia

species: Providencia sneebia

full scientific name: Providencia sneebia Juneja and Lazzaro 2009

strain designation: A

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
28876negativerod-shaped
69480yes92.765
69480negative99.951

pigmentation

  • @ref: 28876
  • production: no

Culture and growth conditions

culture medium

  • @ref: 8412
  • name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/535
  • composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
8412positivegrowth28mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 28876
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.965

observation

  • @ref: 28876
  • observation: aggregates in clumps

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2887618403L-arabitol+carbon source
2887628757fructose+carbon source
2887617234glucose+carbon source
2887617754glycerol+carbon source
2887629864mannitol+carbon source
2887637684mannose+carbon source
28876506227N-acetylglucosamine+carbon source
2887633942ribose+carbon source
2887617814salicin+carbon source
2887630911sorbitol+carbon source
2887627082trehalose+carbon source
2887616199urea+carbon source
2887618222xylose+carbon source
288764853esculin+hydrolysis

enzymes

  • @ref: 28876
  • value: urease
  • activity: +
  • ec: 3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
8412haemolymph of wild-caught Drosophila melanogaster fruit fliesDrosophila melanogasterPennsylvania, State College, apple orchardUSAUSANorth America
67770Drosophila melanogaster captured in an apple orchardDrosophila melanogaster

isolation source categories

Cat1Cat2Cat3
#Host#Arthropoda#Insecta
#Host Body Product#Fluids

Safety information

risk assessment

  • @ref: 8412
  • pathogenicity animal: yes
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Providencia sneebia ATCC:BAA-1589 16S ribosomal RNA gene, partial sequenceHM0380031465ena1141660
8412Providencia sneebia strain DSM 19967 16S ribosomal RNA gene, partial sequenceEU587095978ena1141660

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Providencia sneebia DSM 19967GCA_000314895chromosomencbi1141660
66792Providencia sneebia DSM 199671141660.6plasmidpatric1141660
66792Providencia sneebia DSM 199671141660.4plasmidpatric1141660
66792Providencia sneebia DSM 199671141660.5plasmidpatric1141660
66792Providencia sneebia DSM 199671141660.3wgspatric1141660
66792Providencia sneebia DSM 199672597489903draftimg1141660

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes79.663no
flagellatedno70.033no
gram-positiveno98.394yes
anaerobicno97.593no
aerobicyes83.062yes
halophileno89.561no
spore-formingno97.355no
thermophileno98.946yes
glucose-utilyes89.741no
glucose-fermentyes88.433no

External links

@ref: 8412

culture collection no.: DSM 19967, ATCC BAA 1589, JCM 16941

straininfo link

  • @ref: 74587
  • straininfo: 402295

literature

  • topic: Phylogeny
  • Pubmed-ID: 19406801
  • title: Providencia sneebia sp. nov. and Providencia burhodogranariea sp. nov., isolated from wild Drosophila melanogaster.
  • authors: Juneja P, Lazzaro BP
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.000117-0
  • year: 2009
  • mesh: Animals, Bacterial Proteins/genetics, Bacterial Typing Techniques, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Drosophila melanogaster/*microbiology, Genes, rRNA, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, Providencia/*classification/genetics/isolation & purification/physiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
8412Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19967)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19967
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
28876Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2877604125316
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
74587Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID402295.1StrainInfo: A central database for resolving microbial strain identifiers