Strain identifier

BacDive ID: 5016

Type strain: Yes

Species: Pantoea conspicua

Strain Designation: BD 805

Strain history: <- T. Coutinho, Forestry and Agricultural Biotechnology Inst., Univ. Pretoria, South Africa; BD 805

NCBI tax ID(s): 472705 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 17578

BacDive-ID: 5016

DSM-Number: 24241

keywords: human pathogen, mesophilic, Bacteria, 16S sequence, genome sequence

description: Pantoea conspicua BD 805 is a mesophilic human pathogen that was isolated from human blood.

NCBI tax id

  • NCBI tax id: 472705
  • Matching level: species

strain history: <- T. Coutinho, Forestry and Agricultural Biotechnology Inst., Univ. Pretoria, South Africa; BD 805

doi: 10.13145/bacdive5016.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Erwiniaceae
  • genus: Pantoea
  • species: Pantoea conspicua
  • full scientific name: Pantoea conspicua Brady et al. 2010

@ref: 17578

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Erwiniaceae

genus: Pantoea

species: Pantoea conspicua

full scientific name: Pantoea conspicua Brady et al. 2010

strain designation: BD 805

type strain: yes

Morphology

multimedia

  • @ref: 17578
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_24241.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 17578
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://bacmedia.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 17578
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 17578
  • sample type: human blood
  • geographic location: Paris
  • country: France
  • origin.country: FRA
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body Product#Fluids#Blood

Safety information

risk assessment

  • @ref: 17578
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 17578
  • description: Pantoea conspicua strain LMG 24534 16S ribosomal RNA gene, partial sequence
  • accession: EU216737
  • length: 1344
  • database: ena
  • NCBI tax ID: 472705

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pantoea conspicua LMG 24534GCA_002095315contigncbi472705
66792Pantoea conspicua strain LMG 24534472705.4wgspatric472705
66792Pantoea conspicua LMG 245342791355156draftimg472705

External links

@ref: 17578

culture collection no.: DSM 24241, CDC 3527-71, LMG 24534

straininfo link

@refpassport
20218http://www.straininfo.net/strains/856585
20218http://www.straininfo.net/strains/836344

literature

  • topic: Phylogeny
  • Pubmed-ID: 19946052
  • title: Emended description of the genus Pantoea, description of four species from human clinical samples, Pantoea septica sp. nov., Pantoea eucrina sp. nov., Pantoea brenneri sp. nov. and Pantoea conspicua sp. nov., and transfer of Pectobacterium cypripedii (Hori 1911) Brenner et al. 1973 emend. Hauben et al. 1998 to the genus as Pantoea cypripedii comb. nov.
  • authors: Brady CL, Cleenwerck I, Venter SN, Engelbeen K, De Vos P, Coutinho TA
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.017301-0
  • year: 2009
  • mesh: Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Enterobacteriaceae Infections/*microbiology, Humans, Molecular Sequence Data, Multilocus Sequence Typing, Nucleic Acid Hybridization, Pantoea/*classification/*isolation & purification, Pectobacterium/*classification/*isolation & purification, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Pathogenicity

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
17578Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24241)https://www.dsmz.de/collection/catalogue/details/culture/DSM-24241
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)