Strain identifier
BacDive ID: 5016
Type strain: 
Species: Pantoea conspicua
Strain Designation: BD 805
Strain history: <- T. Coutinho, Forestry and Agricultural Biotechnology Inst., Univ. Pretoria, South Africa; BD 805
NCBI tax ID(s): 472705 (species)
version 8.1 (current version)
General
@ref: 17578
BacDive-ID: 5016
DSM-Number: 24241
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, motile, human pathogen
description: Pantoea conspicua BD 805 is a mesophilic, motile human pathogen that was isolated from human blood.
NCBI tax id
- NCBI tax id: 472705
- Matching level: species
strain history
- @ref: 17578
- history: <- T. Coutinho, Forestry and Agricultural Biotechnology Inst., Univ. Pretoria, South Africa; BD 805
doi: 10.13145/bacdive5016.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Erwiniaceae
- genus: Pantoea
- species: Pantoea conspicua
- full scientific name: Pantoea conspicua Brady et al. 2010
@ref: 17578
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Erwiniaceae
genus: Pantoea
species: Pantoea conspicua
full scientific name: Pantoea conspicua Brady et al. 2010
strain designation: BD 805
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 98.196 | |
| 69480 | 99.976 | negative |
multimedia
- @ref: 17578
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_24241.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 17578
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 17578
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.954 |
Isolation, sampling and environmental information
isolation
- @ref: 17578
- sample type: human blood
- geographic location: Paris
- country: France
- origin.country: FRA
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body Product | #Fluids | #Blood |
taxonmaps
- @ref: 69479
- File name: preview.99_996.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_310;97_507;98_583;99_996&stattab=map
- Last taxonomy: Pantoea
- 16S sequence: EU216737
- Sequence Identity:
- Total samples: 7737
- soil counts: 442
- aquatic counts: 948
- animal counts: 4423
- plant counts: 1924
Safety information
risk assessment
- @ref: 17578
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 17578
- description: Pantoea conspicua strain LMG 24534 16S ribosomal RNA gene, partial sequence
- accession: EU216737
- length: 1344
- database: ena
- NCBI tax ID: 472705
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Pantoea conspicua LMG 24534 | GCA_002095315 | contig | ncbi | 472705 |
| 66792 | Pantoea conspicua strain LMG 24534 | 472705.4 | wgs | patric | 472705 |
| 66792 | Pantoea conspicua LMG 24534 | 2791355156 | draft | img | 472705 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| gram-positive | no | 98.233 | no |
| anaerobic | no | 98.664 | no |
| halophile | no | 84.992 | no |
| spore-forming | no | 94.96 | no |
| glucose-util | yes | 94.51 | no |
| aerobic | no | 62.69 | no |
| flagellated | no | 66.625 | no |
| thermophile | no | 98.866 | yes |
| motile | yes | 92.183 | no |
| glucose-ferment | yes | 89.822 | no |
External links
@ref: 17578
culture collection no.: DSM 24241, CDC 3527-71, LMG 24534
straininfo link
- @ref: 74511
- straininfo: 293429
literature
- topic: Phylogeny
- Pubmed-ID: 19946052
- title: Emended description of the genus Pantoea, description of four species from human clinical samples, Pantoea septica sp. nov., Pantoea eucrina sp. nov., Pantoea brenneri sp. nov. and Pantoea conspicua sp. nov., and transfer of Pectobacterium cypripedii (Hori 1911) Brenner et al. 1973 emend. Hauben et al. 1998 to the genus as Pantoea cypripedii comb. nov.
- authors: Brady CL, Cleenwerck I, Venter SN, Engelbeen K, De Vos P, Coutinho TA
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.017301-0
- year: 2009
- mesh: Bacterial Typing Techniques, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Enterobacteriaceae Infections/*microbiology, Humans, Molecular Sequence Data, Multilocus Sequence Typing, Nucleic Acid Hybridization, Pantoea/*classification/*isolation & purification, Pectobacterium/*classification/*isolation & purification, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
- topic2: Pathogenicity
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 17578 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24241) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24241 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 74511 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID293429.1 | StrainInfo: A central database for resolving microbial strain identifiers |