Strain identifier

BacDive ID: 5010

Type strain: Yes

Species: Pantoea eucalypti

Strain Designation: BD 769, R-25678

Strain history: <- T. A. Coutinho, Forestry and Agricultural Biotechnology Inst., Univ. Pretoria, South Africa; R-25678

NCBI tax ID(s): 470933 (species)

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General

@ref: 16694

BacDive-ID: 5010

DSM-Number: 23077

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped, plant pathogen

description: Pantoea eucalypti BD 769 is a facultative anaerobe, mesophilic, Gram-negative plant pathogen that was isolated from Eucalyptus sp..

NCBI tax id

  • NCBI tax id: 470933
  • Matching level: species

strain history

  • @ref: 16694
  • history: <- T. A. Coutinho, Forestry and Agricultural Biotechnology Inst., Univ. Pretoria, South Africa; R-25678

doi: 10.13145/bacdive5010.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Erwiniaceae
  • genus: Pantoea
  • species: Pantoea eucalypti
  • full scientific name: Pantoea eucalypti Brady et al. 2009

@ref: 16694

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Erwiniaceae

genus: Pantoea

species: Pantoea eucalypti

full scientific name: Pantoea eucalypti Brady et al. 2009

strain designation: BD 769, R-25678

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
29239negative1.5-3.0 µm0.9 µmrod-shapedyes
69480yes97.46
69480negative99.984

multimedia

  • @ref: 16694
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_23077.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 16694
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 16694
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 29239
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
29239no
69481no100
69480no99.972

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2923916449alanine+carbon source
2923922599arabinose+carbon source
2923935391aspartate+carbon source
2923917057cellobiose+carbon source
2923916947citrate+carbon source
2923928757fructose+carbon source
2923928260galactose+carbon source
2923917234glucose+carbon source
2923929987glutamate+carbon source
2923917754glycerol+carbon source
2923917716lactose+carbon source
2923917306maltose+carbon source
2923929864mannitol+carbon source
2923937684mannose+carbon source
2923926271proline+carbon source
2923926546rhamnose+carbon source
2923933942ribose+carbon source
2923917822serine+carbon source
2923930031succinate+carbon source
2923917992sucrose+carbon source
2923927082trehalose+carbon source
2923953423tween 40+carbon source
2923953426tween 80+carbon source
2923918222xylose+carbon source

Isolation, sampling and environmental information

isolation

  • @ref: 16694
  • sample type: Eucalyptus sp.
  • host species: Eucalyptus
  • country: Uruguay
  • origin.country: URY
  • continent: Middle and South America

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Shrub (Scrub)
#Host#Plants#Tree

Safety information

risk assessment

  • @ref: 16694
  • pathogenicity plant: yes
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16694
  • description: Pantoea eucalypti strain LMG 24197 16S ribosomal RNA gene, partial sequence
  • accession: EF688009
  • length: 1348
  • database: ena
  • NCBI tax ID: 470933

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Pantoea eucalypti LMG 24197GCA_009646115completencbi470933
66792Pantoea eucalypti LMG 24197GCA_006494355contigncbi470933
66792Pantoea eucalypti strain LMG 24197470933.10wgspatric470933
66792Pantoea eucalypti strain LMG 24197470933.11completepatric470933

GC content

@refGC-contentmethod
1669454.5high performance liquid chromatography (HPLC)
2923954.5

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes93.818yes
flagellatedno66.745no
gram-positiveno97.918yes
anaerobicno98.923no
aerobicno71.571yes
halophileno84.936no
spore-formingno94.604yes
glucose-utilyes95.317yes
glucose-fermentyes88.937no
thermophileno99.214yes

External links

@ref: 16694

culture collection no.: DSM 23077, BCC 076, LMG 24197

straininfo link

  • @ref: 74505
  • straininfo: 281216

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19620357Pantoea vagans sp. nov., Pantoea eucalypti sp. nov., Pantoea deleyi sp. nov. and Pantoea anthophila sp. nov.Brady CL, Venter SN, Cleenwerck I, Engelbeen K, Vancanneyt M, Swings J, Coutinho TAInt J Syst Evol Microbiol10.1099/ijs.0.009241-02009Amplified Fragment Length Polymorphism Analysis, Argentina, Bacterial Typing Techniques, Cluster Analysis, DNA Fingerprinting, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Eucalyptus/*microbiology, Genotype, Molecular Sequence Data, Nucleic Acid Hybridization, Pantoea/*classification/genetics/*isolation & purification, Phylogeny, Plant Diseases/*microbiology, Plant Leaves/microbiology, Plant Shoots/microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, South Africa, Uganda, Uruguay, Zea mays/*microbiologyGenetics
34202644Relationship of the Pine Growth Promoting Pantoea eucalypti FBS135 with Type Strains P. eucalypti LMG 24197(T) and P. vagans 24199(T).Wei C, Song Z, Lu Y, Zhao Y, Fan BLife (Basel)10.3390/life110706082021

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
16694Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23077)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23077
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
29239Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2565928776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
74505Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID281216.1StrainInfo: A central database for resolving microbial strain identifiers